ChloroMitoSSRDB 2.0 - Database of Microsatellites from Chloroplast & Mitochondrial Genomes

All Imperfect Repeat Motifs of Chloroplast Genomes

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A	C	T	G	GT	AT	GA	AC	TG	AG	TC	GC	CA	CG
TA	TCT	GCT	CAC	GAA	TAG	GGC	CCA	ATC	AAT	TGA	GTT	TCG	CCG
CGC	TTC	GTA	GCA	AAG	TTA	TGC	CGT	TTG	ACA	GTG	AGT	CAA	AGA
AAC	GGA	ACG	GAT	CTC	AGC	AGG	GAC	TAT	ATA	CTT	GGT	CTG	CTA
GCC	GCG	TGG	CGA	CAG	ACT	CCT	TCA	TGT	CGG	CAT	GAG	GTC	ATG
TCC	CAGT	TAAG	GAAG	GTCC	TCCG	TTGG	ATGG	AAGT	ACTC	TACA	CTAC	AGTG	CCCA
TAGC	CGAT	AGCC	CTTC	AAGC	ACCC	GGTA	TGGA	TCGT	CGTA	TCGG	CGCT	TGCA	CCTT
TGTT	CCTG	GACC	CCCG	ACTG	CATA	TCGA	CTGA	CCCT	AGTC	CAGG	CTAG	TAAT	ATGC
CTGT	GACA	GCTC	TGCC	TTGA	ATCC	ATGA	ATTC	TGTA	TTCC	GGCA	AGGC	CCAA	TCAC
CATC	TAGG	AGCA	ATTG	AGAT	GGGA	TCCA	GCTA	CATG	GATC	TACC	GCCC	TTTA	CAAA
GCAC	GGAT	CGGG	CCGG	AATT	AATA	GATA	TTCT	CGCC	CCTC	TGTC	GACT	AACC	ACGG
TTAC	GTAA	CTTA	TTGT	GTGG	CGTT	ACGC	GGGC	TATT	TAGT	GAGT	GGAG	AACG	GTTA
GTCT	ACTT	CCGT	GAGC	CTGC	CGAC	GCAA	GTAC	AGGG	ACCT	GGCC	GCGA	GGCG	TTAA
GCAT	CAAC	AACA	CGTG	CACC	TCTG	CGGC	TTCA	TTAT	GATT	CCAG	GTGA	ACTA	GAAC
CCAT	TCGC	ACAT	GTTG	ATAC	GAGG	CCAC	GTGC	CGAA	GGGT	ACGA	TGGT	TAGA	ATTT
ATCA	AAGG	ATCT	CAGC	GCGG	GTCA	CTTG	TACT	AAGA	GCCA	TGCG	ACCG	CAAT	ATGT
TGAT	TAAC	CTGG	GTTC	CTCG	AGAC	AGCG	TCCT	TGAA	AAAG	CAAG	ACAG	AGTT	GAAT
TTTG	GGTT	TATC	GTAG	CAGA	ATTA	TAAA	CATT	GTAT	TCTT	GTTT	AACT	TCAT	CTCA
AGGA	TGGG	GGAC	CGGA	CCGA	GGTC	AAAT	CTTT	TTGC	GCTT	AGCT	CTAA	CTCC	TCAA
GATG	TCTA	TCCC	TGCT	CCTA	AGTA	TCAG	TTTC	AGGT	AGAA	GAAA	TTAG	TGGC	TGAC
GCTG	GCCG	AATG	ATAA	TATG	GCCT	TTCG	AGTTT	GAACC	AGAAA	ACGTA	TGAAG	AAATG	TATGG
TTGCC	CTAGA	GATTA	CTTTT	GTTTT	TTTGA	GGGGA	GATGT	CAATA	CGAAT	AGTGA	TATTG	AACGA	GATAG
GGATA	CAATT	AGTAA	AGATG	TTTTC	TTCAT	AGAAT	CTTAA	TGATA	TAAAC	ACGAG	ATGCT	CTGAT	GATTC
GGTAG	GCCAA	TTATG	CCCTA	TATCC	TACAA	TCAAG	CGATA	ATTTC	AAATA	GACTT	ATTGT	AGGGA	TGCAT
CTCAA	AAGTT	AGATT	TCTCA	TAATA	CTTCT	ATGAT	CATCT	TATCA	TGCTT	ATTAG	TAAGC	ATTGG	CTAAC
AAGGT	TTAGT	GAAGG	CGAAG	TAGGA	ATTGC	GAAAT	TACCC	TTCTC	GCCCT	GGAAA	CTTGT	GGATG	TCATC
CTTGC	GGTTT	AGGTT	TTTTA	GGGAG	CATAA	AAATC	ACCTA	CTCTA	TGGCC	GGATC	ATATC	TGTAC	TAGAT
AACTT	AGCAA	TCTTA	TCCTA	TCTTT	TCTAA	TAAAA	GAAAG	AACTC	CTTAT	TTGAT	TTTAG	TCAAC	TTGTG
CTAAA	TCAAA	ATACT	TCCCT	AAATT	AATAT	TTTGT	CCTGG	TAACA	AGTAG	TCCAT	TGTAA	TCCGT	AGATC
AGTGT	GCTGG	GTGTG	TTATT	TTTAC	AAAGT	GGTAT	TCGAT	TTCCC	TCCTG	ATAGA	ATTCG	TCTTG	TTCCA
TTTTG	AACAA	AAAAC	AGCGA	TAAGA	TTCTA	CACTT	CGAAA	GTTCA	ATCAT	AGGTA	TCCCC	AGTAC	TATAC
CTTCA	TTAAG	TGGAA	TTTCT	TTGCT	AAAGC	CGATT	GAATA	ACTTA	TGTGC	GTTTA	CATTC	GAATT	TTCAG
GTTAT	GTCCG	GATAC	GCAGT	CTATA	TCAGA	TTTAT	GGTTC	TCGGT	TCCTT	TCCAA	GCAAT	GTAGA	TACCT
TCTGA	TTAAC	GAATC	ACATA	GGTAA	TAGGC	ACCAT	TAATT	TATTC	ATATT	CATAC	TCATT	TATAA	TGCAA
GACCG	TTAGG	TATGT	CCTCT	ATCCC	TATAG	CAGAA	CACAA	TTTCA	ATTAA	TATTT	AATTC	CCTTT	GTATT
ATCTA	AGAAC	ACGGA	AATGC	CCTTC	ATTCC	TCCAC	ATTCT	TTGAA	CAAAA	TTCAC	TCTAT	ATACC	TTCAA
GTTAA	AAGGG	AATAA	GCAAA	TTCGG	TTGCA	CATTA	CTTCC	TTACG	AAGCA	TACAC	AACAT	TGGGC	ATCTG
ATTTT	TAATC	TCCGA	TTGGT	AGTGC	CATTT	TATGA	GATAT	TTTGG	TAAGT	ACTGA	TTTAA	CGCAA	CTACT
AATTG	AATGA	GATCG	AAGGA	TTAGA	AGATA	GAATG	AGCCG	GTTCT	TAAAG	AAAAG	CCAAA	CTCTT	GAGAT
CAAAT	AAGAA	TTTCC	TATTA	ATATA	AAGTA	TCATA	TTCTG	TAGGT	TGGTA	CTAAG	TTACC	AACAG	ATTAT
ATCCA	TAGAG	TCCTC	GAGGT	CTAAT	ATTTG	GGAGA	ATGGT	ACTCT	TCTGT	CAAAC	GCTCT	ATGAA	TAGAA
TCGAA	AGTTA	GATCA	GTAAT	GGATT	CAAGA	AAACA	AATAC	CACCC	AATTT	GTATG	AAAAT	CTTGA	ATAAA
CCTAT	GATTT	AAAGG	GCCCC	ACATC	AGCAT	GATCT	CATCG	CAATC	ATTCA	TACAG	TTGTT	TCACC	TTGAC
TGTCG	TACTA	ATGTA	CGTTT	AGCGT	TAATG	ATTTA	AAAGA	CCGAA	TGTTT	TAGTA	TACTT	CTTAG	AATCC
ATCTC	TACCA	CTTTA	TTAAT	ATGTT	GGAAT	ATCAA	CTCCC	AAACC	CTGCT	TTACT	GGCGT	CCTCC	AGCCC
TGTGG	GAAGA	CAGAT	CATAT	CGTAG	CCCTC	AGCAC	CCTTG	TTTGC	TGTAT	ACAGT	CATTG	GAGGA	TTATC
GAGAA	ATAGT	CGGAT	TAGCT	TATAT	CAATG	TAAAT	TTCTT	ATTGA	ATAAG	CTATT	ACCGG	GATAA	TTCGA
ACAAT	TCAAT	ACCGA	ATTAC	TTACA	GATGG	ACTAA	AGGAA	AGAGA	GTCTT	TATCT	GTCAA	GATCC	AATTA
ATCTT	AAACT	ACTAT	CTATC	ATAAT	TTTCG	TACAT	AAGAG	TTATA	TCCGG	GCCTT	GGGAA	GTATA	AATCT
GGGTT	CAACA	TAACT	CCGGA	GAAAA	TGAAA	AAGTG	TGATT	AAGAT	CTTTC	CCAAT	CCAAC	TTCCT	TGGAT
CCGTT	CATCA	TACGG	AACTA	CTGTT	AGAGT	CAAAAC	TTGCTA	TAGCTG	AAAACA	AAATAA	GATGGA	GGGAGG	TAAAGT
ATTAGT	ACTCTT	ATTTTA	ACTTCT	AAAGAT	GTATTA	AATTCA	AATTAA	AGGAAG	ACTAAA	TTAGAT	GCTTCA	AAGTTT	GCAAAA
CTCAAG	TGCAAT	GAGAAA	ACGGAA	GAAAAC	TTCTTT	ATCAAA	TATTAG	TTCATA	CTTCTA	CAGGAA	ATTACT	CATATA	AAGAAT
TCTGGT	GTTTAT	ATTACA	AACAGG	AAGGAA	CACATA	GTAATA	CAACTT	CTCTTC	ATAGTG	TTTCCG	CAATGG	GAACTA	CCGTCG
GTTCGG	ATTCTT	AATTAT	ACAGTA	GGATAA	ATATCT	GGATAT	AGTGGA	TAAGAT	TAAACT	AGTGAT	GCAATA	TTCTAA	TGTTTA
TAAGTA	AACTAT	AAAGTA	CTGTAT	CCTCTT	AACAAA	CCAAAT	TCTCTT	AAGAAA	TAACAT	TAAGAA	TCAACA	TAATTC	TTCAAT
AATTCT	ATGTAT	CCAACT	TATCAC	GAATGA	AGTCGA	CATACT	ATGGTA	TCATCC	TCTTGT	AGAACA	CCCGCT	ATTTGA	TTATTC
TAATAT	AAAATA	TTTCGT	AAGTCA	ATATCG	AAATAC	TAACTA	AGAAGC	TTGGAT	GATAAA	TAGTAC	GAGATA	CTTTTG	TATCTC
GATTAT	ACTAAG	ATTGAA	CTTTTT	TTTTTG	TAATGA	TAAAAG	TATTTA	TACTTA	TCTATT	CAAACA	TATCGT	TTCGAA	TTAATC
GAATTC	CTCTTG	AAACTT	CAAAGA	CAATAT	TAATCA	TAATCC	ATTTGT	TTCTGT	AAAAAT	TATTTG	ATATGG	AGAAAG	TTATAT
GGGGAA	GGTTAT	TGCTAA	CTAATG	ATCTTT	CTAAAG	ATCGAA	TCTGAA	GAAGTT	TACTGA	TACACG	TACTTC	TTCATC	GTTTCC
TCTCAT	TAAAGA	AGAATT	TGCTTT	TCATGT	GGGAAA	CTTTGA	TTAAGT	GGATGA	TAATTG	TATAAG	TGATTA	TACTAG	GATCAT
GTATAA	CAATTC	TCTTAA	TCCTAA	GTTGGC	AGATGT	AATGCA	GGATAC	TTTAAA	GAATTT	TGTTTT	AAGTAT	GATATA	TTTACA
TTACTA	AGAATG	TATACT	ATCTGA	TTAGTT	CCTATA	TCAAAT	GGTATA	AACATA	TTTTAC	ATGCTA	TTTAGT	GAAAAG	AATTCG
TCCATC	ATATTG	ATTAAT	AATATG	ATCTTA	AGTAAT	ATTAAA	CTAGTA	TTTTAG	TTTCAA	GACCTG	AAATTC	AGAATA	AGTAGA
GAAGTC	TTAAGA	TTTCTG	AGATTA	CCGCTG	TCTAAT	AATATT	TACGTT	CATTTT	TTTGTT	AAGATA	ATATGT	TTTTAA	CTAATA
TATGTA	ATAGAT	TCAATT	TTGTTT	TCACTA	AAAATC	TTGAAG	TTAAAG	TAGATA	ATACTT	TAGAAG	TTATGA	TTTCTT	AAAAGG
AGGTGT	AAATTG	CATTCA	ATTAAG	TATTTC	GGAACA	ATTATC	TTCTCC	GCATAA	TGTATA	TCCTAC	TAACAA	ATGTAC	GAAGTG
AATCCT	AATTGG	TCCAAT	TAATAG	ATAAAA	TGTAAT	CACAAA	TTAATA	ATATTT	ACCAAC	AAGAGG	CCTATT	GTTATT	TCTTAG
ATACCA	AGTTGG	TTGTTA	TCAGAA	TCAATA	TGGAGT	TCAAAA	TTTTGA	AGAAAT	TTTTCC	CTTATT	GTAAAA	TCTTAT	GGAGTG
TTCAGA	TACCAA	AAAGCA	TACACC	CTTCAA	GAAGGG	TAAGAG	ATCGAT	ATAGGA	TACAAA	TCCCCC	CTCAAA	TAAAAA	TTTTCT
CGAAAA	TTTGTA	TCTTCA	TATGAA	TAAATT	GTTTTT	ACATAC	AGATAA	ATTAGA	GTCCAG	CATAGT	AATAGA	CATTCT	GAAATG
ATTCTA	AAAGGA	GTTTGT	ATTGTA	TTACCT	GATTTG	CAAAAG	TAGAGC	TCTTTT	TAGATT	TATTCA	CATAGG	TAAATA	ATTTCT
ATAAGA	TAAATG	ACTTAA	ATGAAT	GTCTCT	AGCTAA	CTATAA	ACGTTA	GGCAAT	TTCCTA	CTACCT	ACTTTG	CAAATA	TGAAAT
GATGAG	GGAATA	ATAGAA	TAAAAT	AAAAGC	TTTCTA	CTCCTT	TTAGAA	TATAAT	AGTATT	TTTTGT	ACAAAT	TAAATC	TATGAT
CAATAA	CTTTCT	GAAAGA	CTTTTA	TAGTTT	TTAATG	CCTTCC	CTTTAT	AATAAC	GCTTGC	ACGGAG	TCAAAG	TTTTTC	ACTAAT
TCTTTA	ATTTAA	ATACAT	CTATAT	TTTTGC	CTTGAT	TCATTT	ATCGTC	TCCAAC	TCCCCA	GAATAG	TCTTCC	CCAACA	GTGATG
TCGAAA	TAGGAA	TGGCTA	CTAGAA	TACTTT	TTAACA	AATAAA	AAACAA	GAAATT	GTTCTT	ATAAGC	TAGAAA	ATCATA	AGTAAA
GTTCCA	AATACA	TACTCT	CAAATG	TCAGAG	TAAAAC	CTTGTT	AGATAT	CGTCAT	TATTCC	CTGCCG	TTGGAA	ATGTTA	AGGAAA
TCCATA	ATGAAG	ATAAAT	ATCTTC	CCAATG	TTTACT	TTATCA	AGTCAA	ACAAAG	CCCCTT	AATACT	ACTGAA	TATCAA	TTTGAC
TTGAAA	ATAACA	AAAATG	TTCAAA	TCCTTA	TTCTAT	AATTTC	AATATA	GATATT	TTTAAT	GTATTT	AATAAG	GATAAG	ATTTAC
CAAGAA	ATCCAT	AATGAT	TGACAA	GAGCAG	ATGTGA	TTTCCT	AATGTT	ACAAAA	TTTCTC	TATTGA	AATTTT	GAATCA	TATATT
AATTGA	TGATAT	GAAATA	TCATAA	AGAGAC	TGATCA	ATACTA	TATAGT	CTAGTT	TCTTTC	GGAAAG	CTACAT	TTGTAT	GGAAAC
TGATAG	TTTGCT	AAAAAG	GATCTT	GGAGGG	ATAAGG	GTAAGA	ATATTA	TATATC	TTTCAT	ATGGAT	TATAAA	TCATTC	TTATCT
TTTATG	CATATT	CATTTC	AGATTT	AAACTG	AACTTA	TTAACG	AGTTTC	GTGCAA	ACATAT	CAAAAA	TCCTTT	ACACCT	TTTTTA
ATCAAT	AAATGA	TGCTAT	TCCTTC	TATAGC	AATGCT	TCTTCG	TTCATT	AAAACG	CCAATT	ATATAC	GAAAAT	TTCCTT	CTTATC
TCCATT	AAAAGA	CCTTTT	GAAGGA	AGGGGA	TATCTA	TTAGTA	TTTATT	TCCCCT	TCATAT	TTTTAT	AATCCA	GGATTT	ATCTAA
ATATTC	TCCTCT	ATATAA	AGGATA	CGTATA	TAGGGA	TCGACT	ACGTAA	AGTCTA	CTGAAT	AAGTAC	GGTTCC	ATTTCA	CTGTTT
ATTTTG	AGCAAA	TAATTA	TCTATA	GGCTTT	AACCTC	ATTCAT	TAGAAT	ATACAG	ATTGAT	CATCCT	AAGCTA	GGAAAA	TTATAG
CTCTTT	ACAAGA	AGCAAC	TTTAAC	CTATTT	AAATGC	CTTCAT	ACTTGC	TATCAT	GAACCC	ATAGGT	CAATTA	GAATGG	TTTATA
TATAAC	TGAAAA	TATTAA	TGTTGA	AGTTAT	TCTCTA	TAACTT	TAGTAT	TTCCTC	CTAAAA	ATTAGC	CATAAA	TTACAA	TATTAC
TTCGTT	GTTGCG	TACCTA	CTTTTC	GTTAAA	AAAAAC	GAAAAA	AGAGAA	TCTATC	ATTTCG	TAAACA	CTTATA	TACATA	AATTTG
TATTCT	TTACTT	AATCTA	ATCCAA	ATAAAG	CGAAAT	GAAGAG	AGAACT	TGAATA	ACAACC	CGAAGA	CTATAC	AAGCAA	GCGACG
TGACTT	GACAAA	TATACA	CAAGCC	TGAATT	ATTATA	CAATAC	ATTCGA	TAGTAA	TAATCT	GCATTA	GAAGCG	CGTTAA	TTGAAT
CTCGTA	TATTGT	CGATTA	TGGCAA	ATTTTT	ATTTTC	TATATG	ATCTAT	AAAATT	ATATAG	TTAATT	AATTAG	GCCAAA	ATTCCC
CATTTA	GATTAG	TTCTAC	ACTTAG	CAATAG	AAACTA	AGATAG	TTAAAC	ACAGAA	TTCCAA	AGCCAC	TTTCGA	TCATCT	GAACTT
ATTCAA	TTAAAA	TTATAA	GTGAAA	ACAATA	GATTTA	CAAAAT	AGAGCA	CTAAGA	AGTTTT	TGCACC	AATCGA	ATTTGG	GAGGAA
AAATCT	CCGGAA	TTTCAC	CAAGAT	CCCTCC	GCAGCT	TTATTT	GTTATC	AAAGAA	GGTTCG	GATTTC	AATTTA	TTATTG	AATCAA
GTGACG	GCTTTA	TTATGT	ATTTAG	CTAACG	TCGAAT	CTTTAG	AAATCA	CAAATC	GGAGAA	CGGCAA	AATGAA	-	-

ChloroMitoSSRDB 2.0 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

All Imperfect Repeat Motifs of Chloroplast Genomes