Chloroplast Motifs - Imperfect ACA Repeats
| S.No | Sequence ID | Motif | Iterations | Start | End | Tract Length | Sequence Name |
| 1 | NC_001319 | ACA | 8 | 4557 | 4580 | 24 | Marchantia polymorpha chloroplast |
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| 2 | NC_014573 | ACA | 7 | 99637 | 99657 | 21 | Geranium palmatum plastid |
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| 3 | NC_014346 | ACA | 5 | 230996 | 231009 | 14 | Floydiella terrestris chloroplast |
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| 4 | NC_018541 | ACA | 5 | 93338 | 93352 | 15 | Elodea canadensis chloroplast |
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| 5 | NC_020438 | ACA | 5 | 88745 | 88759 | 15 | Gonium pectorale chloroplast |
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| 6 | NC_021109 | ACA | 5 | 25029 | 25042 | 14 | Pleodorina starrii plastid |
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| 7 | NC_021455 | ACA | 5 | 140785 | 140798 | 14 | Prinsepia utilis plastid |
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| 8 | NC_001675 | ACA | 5 | 108115 | 108129 | 15 | Cyanophora paradoxa cyanelle |
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| 9 | NC_008117 | ACA | 5 | 121883 | 121898 | 16 | Zygnema circumcarinatum chloroplast |
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| 10 | NC_008117 | ACA | 5 | 129075 | 129089 | 15 | Zygnema circumcarinatum chloroplast |
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| 11 | NC_009573 | ACA | 5 | 27148 | 27161 | 14 | Rhodomonas salina chloroplast |
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| 12 | NC_012978 | ACA | 5 | 109030 | 109044 | 15 | Parachlorella kessleri chloroplast |
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| 13 | NC_011087 | ACA | 4 | 242138 | 242149 | 12 | Paulinella chromatophora chromatophore |
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| 14 | NC_011087 | ACA | 4 | 423277 | 423288 | 12 | Paulinella chromatophora chromatophore |
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| 15 | NC_011087 | ACA | 4 | 575612 | 575623 | 12 | Paulinella chromatophora chromatophore |
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| 16 | NC_011087 | ACA | 4 | 731048 | 731058 | 11 | Paulinella chromatophora chromatophore |
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| 17 | NC_011087 | ACA | 4 | 978221 | 978233 | 13 | Paulinella chromatophora chromatophore |
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| 18 | NC_014267 | ACA | 4 | 6696 | 6706 | 11 | Kryptoperidinium foliaceum chloroplast |
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| 19 | NC_014287 | ACA | 4 | 105350 | 105361 | 12 | Durinskia baltica chloroplast |
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| 20 | NC_014345 | ACA | 4 | 45693 | 45704 | 12 | Alveolata sp. CCMP3155 chloroplast |
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| 21 | NC_014346 | ACA | 4 | 258644 | 258656 | 13 | Floydiella terrestris chloroplast |
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| 22 | NC_015083 | ACA | 4 | 73094 | 73104 | 11 | Erodium carvifolium chloroplast |
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| 23 | NC_015204 | ACA | 4 | 79827 | 79838 | 12 | Gossypium thurberi chloroplast |
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| 24 | NC_015359 | ACA | 4 | 27710 | 27722 | 13 | Chlorella variabilis plastid |
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| 25 | NC_015359 | ACA | 4 | 43728 | 43739 | 12 | Chlorella variabilis plastid |
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| 26 | NC_015359 | ACA | 4 | 90260 | 90270 | 11 | Chlorella variabilis plastid |
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| 27 | NC_015605 | ACA | 4 | 74397 | 74407 | 11 | Nelumbo lutea chloroplast |
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| 28 | NC_015605 | ACA | 4 | 122109 | 122120 | 12 | Nelumbo lutea chloroplast |
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| 29 | NC_015608 | ACA | 4 | 94302 | 94313 | 12 | Olea woodiana subsp. woodiana chloroplast |
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| 30 | NC_015610 | ACA | 4 | 74430 | 74440 | 11 | Nelumbo nucifera chloroplast |
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| 31 | NC_015610 | ACA | 4 | 122196 | 122207 | 12 | Nelumbo nucifera chloroplast |
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| 32 | NC_015621 | ACA | 4 | 6152 | 6163 | 12 | Ageratina adenophora chloroplast |
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| 33 | NC_015645 | ACA | 4 | 33758 | 33768 | 11 | Schizomeris leibleinii chloroplast |
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| 34 | NC_015645 | ACA | 4 | 132137 | 132148 | 12 | Schizomeris leibleinii chloroplast |
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| 35 | NC_015645 | ACA | 4 | 153176 | 153187 | 12 | Schizomeris leibleinii chloroplast |
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| 36 | NC_015645 | ACA | 4 | 177576 | 177587 | 12 | Schizomeris leibleinii chloroplast |
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| 37 | NC_015891 | ACA | 4 | 131917 | 131928 | 12 | Spirodela polyrhiza chloroplast |
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| 38 | NC_015892 | ACA | 4 | 118239 | 118250 | 12 | Magnolia kwangsiensis chloroplast |
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| 39 | NC_016692 | ACA | 4 | 79857 | 79868 | 12 | Gossypium herbaceum subsp. africanum chloroplast |
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| 40 | NC_016703 | ACA | 4 | 3215 | 3226 | 12 | Phaeocystis antarctica strain CCMP1374 plastid |
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| 41 | NC_016703 | ACA | 4 | 45080 | 45091 | 12 | Phaeocystis antarctica strain CCMP1374 plastid |
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| 42 | NC_016708 | ACA | 4 | 3344 | 3355 | 12 | Millettia pinnata chloroplast |
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| 43 | NC_016712 | ACA | 4 | 79788 | 79799 | 12 | Gossypium arboreum chloroplast |
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| 44 | NC_016731 | ACA | 4 | 43148 | 43159 | 12 | Synedra acus chloroplast |
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| 45 | NC_016732 | ACA | 4 | 74470 | 74482 | 13 | Dunaliella salina chloroplast |
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| 46 | NC_016732 | ACA | 4 | 91346 | 91356 | 11 | Dunaliella salina chloroplast |
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| 47 | NC_016732 | ACA | 4 | 102340 | 102350 | 11 | Dunaliella salina chloroplast |
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| 48 | NC_016732 | ACA | 4 | 134407 | 134417 | 11 | Dunaliella salina chloroplast |
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| 49 | NC_016732 | ACA | 4 | 176541 | 176552 | 12 | Dunaliella salina chloroplast |
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| 50 | NC_016732 | ACA | 4 | 213948 | 213959 | 12 | Dunaliella salina chloroplast |
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| 51 | NC_016753 | ACA | 4 | 9667 | 9677 | 11 | Colocasia esculenta chloroplast |
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| 52 | NC_017602 | ACA | 4 | 4269 | 4279 | 11 | Elaeis guineensis chloroplast |
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| 53 | NC_018051 | ACA | 4 | 118737 | 118748 | 12 | Vigna unguiculata chloroplast |
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| 54 | NC_018523 | ACA | 4 | 48932 | 48942 | 11 | Saccharina japonica chloroplast |
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| 55 | NC_018541 | ACA | 4 | 75895 | 75906 | 12 | Elodea canadensis chloroplast |
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| 56 | NC_018552 | ACA | 4 | 11861 | 11872 | 12 | Capsicum annuum chloroplast |
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| 57 | NC_018565 | ACA | 4 | 115243 | 115253 | 11 | Pachycladon enysii chloroplast |
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| 58 | NC_018569 | ACA | 4 | 40463 | 40474 | 12 | Trebouxiophyceae sp. MX-AZ01 chloroplast |
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| 59 | NC_019616 | ACA | 4 | 35296 | 35306 | 11 | Vaccinium macrocarpon plastid |
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| 60 | NC_019616 | ACA | 4 | 97084 | 97095 | 12 | Vaccinium macrocarpon plastid |
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| 61 | NC_020317 | ACA | 4 | 118518 | 118529 | 12 | Magnolia officinalis subsp. biloba voucher SC001 chloroplast |
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| 62 | NC_020318 | ACA | 4 | 118105 | 118116 | 12 | Magnolia grandiflora voucher NJ016 chloroplast |
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| 63 | NC_020364 | ACA | 4 | 4291 | 4301 | 11 | Pseudophoenix vinifera plastid |
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| 64 | NC_020371 | ACA | 4 | 86396 | 86408 | 13 | Pavlova lutheri chloroplast |
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| 65 | NC_020438 | ACA | 4 | 138706 | 138716 | 11 | Gonium pectorale chloroplast |
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| 66 | NC_020438 | ACA | 4 | 169268 | 169279 | 12 | Gonium pectorale chloroplast |
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| 67 | NC_020795 | ACA | 4 | 174269 | 174280 | 12 | Chondrus crispus plastid complete genome |
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| 68 | NC_021075 | ACA | 4 | 13723 | 13734 | 12 | Calliarthron tuberculosum chloroplast |
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| 69 | NC_021075 | ACA | 4 | 35664 | 35675 | 12 | Calliarthron tuberculosum chloroplast |
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| 70 | NC_021075 | ACA | 4 | 46916 | 46926 | 11 | Calliarthron tuberculosum chloroplast |
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| 71 | NC_021101 | ACA | 4 | 29708 | 29719 | 12 | Francoa sonchifolia plastid |
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| 72 | NC_021102 | ACA | 4 | 114859 | 114869 | 11 | Pachycladon cheesemanii chloroplast |
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| 73 | NC_021109 | ACA | 4 | 148989 | 149000 | 12 | Pleodorina starrii plastid |
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| 74 | NC_021109 | ACA | 4 | 175504 | 175515 | 12 | Pleodorina starrii plastid |
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| 75 | NC_021109 | ACA | 4 | 201475 | 201486 | 12 | Pleodorina starrii plastid |
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| 76 | NC_021449 | ACA | 4 | 4860 | 4871 | 12 | Utricularia gibba chloroplast |
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| 77 | NC_021455 | ACA | 4 | 11120 | 11131 | 12 | Prinsepia utilis plastid |
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| 78 | NC_021618 | ACA | 4 | 51246 | 51256 | 11 | Grateloupia taiwanensis plastid |
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| 79 | NC_021618 | ACA | 4 | 81365 | 81376 | 12 | Grateloupia taiwanensis plastid |
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| 80 | NC_021637 | ACA | 4 | 46345 | 46356 | 12 | Phaeocystis globosa strain Pg-G(A) chloroplast |
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| 81 | NC_000926 | ACA | 4 | 44365 | 44376 | 12 | Guillardia theta chloroplast |
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| 82 | NC_000927 | ACA | 4 | 85945 | 85956 | 12 | Nephroselmis olivacea chloroplast |
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| 83 | NC_000927 | ACA | 4 | 176226 | 176236 | 11 | Nephroselmis olivacea chloroplast |
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| 84 | NC_000932 | ACA | 4 | 115078 | 115088 | 11 | Arabidopsis thaliana chloroplast |
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| 85 | NC_001603 | ACA | 4 | 86116 | 86126 | 11 | Euglena gracilis chloroplast |
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| 86 | NC_001675 | ACA | 4 | 134996 | 135007 | 12 | Cyanophora paradoxa cyanelle |
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| 87 | NC_001840 | ACA | 4 | 101838 | 101848 | 11 | Cyanidium caldarium chloroplast |
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| 88 | NC_001865 | ACA | 4 | 64373 | 64384 | 12 | Chlorella vulgaris chloroplast |
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| 89 | NC_001865 | ACA | 4 | 120655 | 120666 | 12 | Chlorella vulgaris chloroplast |
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| 90 | NC_002186 | ACA | 4 | 51369 | 51381 | 13 | Mesostigma viride chloroplast |
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| 91 | NC_002693 | ACA | 4 | 97098 | 97109 | 12 | Oenothera elata subsp. hookeri plastid plastome I |
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| 92 | NC_004799 | ACA | 4 | 76605 | 76616 | 12 | Cyanidioschyzon merolae strain 10D chloroplast |
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| 93 | NC_004799 | ACA | 4 | 100533 | 100543 | 11 | Cyanidioschyzon merolae strain 10D chloroplast |
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| 94 | NC_005086 | ACA | 4 | 120526 | 120540 | 15 | Amborella trichopoda chloroplast |
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| 95 | NC_005353 | ACA | 4 | 59690 | 59701 | 12 | Chlamydomonas reinhardtii chloroplast |
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| 96 | NC_005353 | ACA | 4 | 111951 | 111962 | 12 | Chlamydomonas reinhardtii chloroplast |
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| 97 | NC_005353 | ACA | 4 | 144039 | 144050 | 12 | Chlamydomonas reinhardtii chloroplast |
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| 98 | NC_006137 | ACA | 4 | 13686 | 13698 | 13 | Gracilaria tenuistipitata var. liui chloroplast |
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| 99 | NC_006137 | ACA | 4 | 41635 | 41646 | 12 | Gracilaria tenuistipitata var. liui chloroplast |
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| 100 | NC_007288 | ACA | 4 | 22860 | 22871 | 12 | Emiliania huxleyi chloroplast |
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| 101 | NC_007288 | ACA | 4 | 26345 | 26355 | 11 | Emiliania huxleyi chloroplast |
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| 102 | NC_007288 | ACA | 4 | 101560 | 101571 | 12 | Emiliania huxleyi chloroplast |
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| 103 | NC_007288 | ACA | 4 | 103184 | 103194 | 11 | Emiliania huxleyi chloroplast |
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| 104 | NC_007957 | ACA | 4 | 78890 | 78900 | 11 | Vitis vinifera chloroplast |
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| 105 | NC_008101 | ACA | 4 | 100794 | 100805 | 12 | Scenedesmus obliquus chloroplast |
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| 106 | NC_008114 | ACA | 4 | 154003 | 154014 | 12 | Pseudendoclonium akinetum chloroplast |
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| 107 | NC_008116 | ACA | 4 | 87640 | 87650 | 11 | Staurastrum punctulatum chloroplast |
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| 108 | NC_008116 | ACA | 4 | 138985 | 138996 | 12 | Staurastrum punctulatum chloroplast |
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| 109 | NC_008117 | ACA | 4 | 26404 | 26415 | 12 | Zygnema circumcarinatum chloroplast |
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| 110 | NC_008334 | ACA | 4 | 118753 | 118764 | 12 | Citrus sinensis chloroplast |
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| 111 | NC_008335 | ACA | 4 | 74925 | 74935 | 11 | Platanus occidentalis chloroplast |
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| 112 | NC_008372 | ACA | 4 | 125758 | 125769 | 12 | Stigeoclonium helveticum chloroplast |
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| 113 | NC_008372 | ACA | 4 | 211434 | 211445 | 12 | Stigeoclonium helveticum chloroplast |
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| 114 | NC_008588 | ACA | 4 | 101758 | 101769 | 12 | Phaeodactylum tricornutum chloroplast |
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| 115 | NC_008588 | ACA | 4 | 103451 | 103463 | 13 | Phaeodactylum tricornutum chloroplast |
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| 116 | NC_008796 | ACA | 4 | 11019 | 11030 | 12 | Ranunculus macranthus chloroplast |
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| 117 | NC_008796 | ACA | 4 | 55588 | 55599 | 12 | Ranunculus macranthus chloroplast |
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| 118 | NC_008796 | ACA | 4 | 110736 | 110747 | 12 | Ranunculus macranthus chloroplast |
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| 119 | NC_009268 | ACA | 4 | 114123 | 114133 | 11 | Arabis hirsuta chloroplast |
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| 120 | NC_009269 | ACA | 4 | 114906 | 114916 | 11 | Barbarea verna chloroplast |
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| 121 | NC_009270 | ACA | 4 | 114925 | 114935 | 11 | Capsella bursa-pastoris chloroplast |
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| 122 | NC_009271 | ACA | 4 | 115501 | 115511 | 11 | Crucihimalaya wallichii chloroplast |
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| 123 | NC_009272 | ACA | 4 | 113733 | 113743 | 11 | Draba nemorosa chloroplast |
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| 124 | NC_009273 | ACA | 4 | 115361 | 115371 | 11 | Lepidium virginicum chloroplast |
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| 125 | NC_009275 | ACA | 4 | 115476 | 115486 | 11 | Nasturtium officinale chloroplast |
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| 126 | NC_009681 | ACA | 4 | 5568 | 5579 | 12 | Leptosira terrestris chloroplast |
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| 127 | NC_009681 | ACA | 4 | 192694 | 192704 | 11 | Leptosira terrestris chloroplast |
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| 128 | NC_009765 | ACA | 4 | 37262 | 37273 | 12 | Cuscuta gronovii chloroplast |
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| 129 | NC_009949 | ACA | 4 | 35888 | 35899 | 12 | Cuscuta obtusiflora chloroplast |
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| 130 | NC_009949 | ACA | 4 | 36591 | 36602 | 12 | Cuscuta obtusiflora chloroplast |
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| 131 | NC_010323 | ACA | 4 | 222 | 234 | 13 | Carica papaya chloroplast |
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| 132 | NC_010358 | ACA | 4 | 96245 | 96256 | 12 | Oenothera argillicola chloroplast |
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| 133 | NC_010360 | ACA | 4 | 97379 | 97390 | 12 | Oenothera glazioviana chloroplast |
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| 134 | NC_010361 | ACA | 4 | 96604 | 96615 | 12 | Oenothera biennis chloroplast |
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| 135 | NC_010362 | ACA | 4 | 95385 | 95396 | 12 | Oenothera parviflora chloroplast |
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| 136 | NC_010772 | ACA | 4 | 52913 | 52925 | 13 | Heterosigma akashiwo chloroplast |
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| 137 | NC_011031 | ACA | 4 | 80964 | 80976 | 13 | Oedogonium cardiacum chloroplast |
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| 138 | NC_011828 | ACA | 4 | 7485 | 7496 | 12 | Trifolium subterraneum chloroplast |
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| 139 | NC_011942 | ACA | 4 | 33598 | 33610 | 13 | Gnetum parvifolium chloroplast |
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| 140 | NC_012097 | ACA | 4 | 26034 | 26045 | 12 | Pycnococcus provasolii chloroplast |
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| 141 | NC_012097 | ACA | 4 | 60125 | 60136 | 12 | Pycnococcus provasolii chloroplast |
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| 142 | NC_012101 | ACA | 4 | 24786 | 24797 | 12 | Monomastix sp. OKE-1 chloroplast |
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| 143 | NC_012224 | ACA | 4 | 115042 | 115053 | 12 | Jatropha curcas chloroplast |
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| 144 | NC_012568 | ACA | 4 | 25511 | 25522 | 12 | Micromonas pusilla CCMP1545 chloroplast |
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| 145 | NC_012575 | ACA | 4 | 31453 | 31464 | 12 | Micromonas sp. RCC299 chloroplast |
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| 146 | NC_012818 | ACA | 4 | 7051 | 7062 | 12 | Alsophila spinulosa chloroplast |
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| 147 | NC_012898 | ACA | 4 | 58531 | 58543 | 13 | Aureococcus anophagefferens chloroplast |
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| 148 | NC_012898 | ACA | 4 | 69320 | 69331 | 12 | Aureococcus anophagefferens chloroplast |
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| 149 | NC_012903 | ACA | 4 | 19640 | 19650 | 11 | Aureoumbra lagunensis chloroplast |
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| 150 | NC_013359 | ACA | 4 | 57119 | 57131 | 13 | Bryopsis hypnoides chloroplast |
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| 151 | NC_013498 | ACA | 4 | 101551 | 101562 | 12 | Ectocarpus siliculosus chloroplast |
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| 152 | NC_013823 | ACA | 4 | 85304 | 85314 | 11 | Typha latifolia chloroplast |
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