ChloroMitoSSRDB 2.0 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

Back To Motif Summary

Chloroplast Motifs - Imperfect GTTT Repeats

S.NoSequence IDMotifIterationsStartEndTract LengthSequence Name
1NC_008454GTTT718001018003728 Pelargonium x hortorum chloroplast
2NC_016736GTTT47421743616Ricinus communis chloroplast
3NC_021109GTTT422007622009015Pleodorina starrii plastid
4NC_009962GTTT4522465226217 Ceratophyllum demersum chloroplast
5NC_010433GTTT4533025331716 Manihot esculenta chloroplast
6NC_011087GTTT393349993351012Paulinella chromatophora chromatophore
7NC_014267GTTT3506285063912Kryptoperidinium foliaceum chloroplast
8NC_014287GTTT3222742228411Durinskia baltica chloroplast
9NC_014287GTTT3288552886612Durinskia baltica chloroplast
10NC_014346GTTT322512922514113Floydiella terrestris chloroplast
11NC_014346GTTT336816736817711Floydiella terrestris chloroplast
12NC_014346GTTT343157343158311Floydiella terrestris chloroplast
13NC_014346GTTT344517644518611Floydiella terrestris chloroplast
14NC_014348GTTT3705247053411Pteridium aquilinum subsp. aquilinum chloroplast
15NC_014348GTTT3874328744312Pteridium aquilinum subsp. aquilinum chloroplast
16NC_014569GTTT36273628412Erodium texanum plastid
17NC_014569GTTT311685211686312Erodium texanum plastid
18NC_014570GTTT3721407215011Eucalyptus grandis chloroplast
19NC_014573GTTT39334934512Geranium palmatum plastid
20NC_014573GTTT3478724788312Geranium palmatum plastid
21NC_014573GTTT311970011971112Geranium palmatum plastid
22NC_014592GTTT3556815569111Cheilanthes lindheimeri chloroplast
23NC_014592GTTT3690166902611Cheilanthes lindheimeri chloroplast
24NC_014675GTTT3783227833312Isoetes flaccida chloroplast
25NC_014697GTTT312939512940612Prunus persica chloroplast
26NC_014699GTTT3313423135211Equisetum arvense chloroplast
27NC_014699GTTT3495684957811Equisetum arvense chloroplast
28NC_014699GTTT3500655007511Equisetum arvense chloroplast
29NC_014699GTTT3502935030311Equisetum arvense chloroplast
30NC_014699GTTT3504685047811Equisetum arvense chloroplast
31NC_014699GTTT3518615187212Equisetum arvense chloroplast
32NC_014699GTTT3519665197611Equisetum arvense chloroplast
33NC_015083GTTT35141515212Erodium carvifolium chloroplast
34NC_015083GTTT3749037491412Erodium carvifolium chloroplast
35NC_015084GTTT3546495466012Coccomyxa sp. C-169 plastid
36NC_015084GTTT3554745548411Coccomyxa sp. C-169 plastid
37NC_015113GTTT3101901020112Anthriscus cerefolium chloroplast
38NC_015139GTTT31807181812Brassica rapa subsp. pekinensis chloroplast
39NC_015139GTTT39727973812Brassica rapa subsp. pekinensis chloroplast
40NC_015204GTTT3339813399212Gossypium thurberi chloroplast
41NC_015204GTTT3539065391813Gossypium thurberi chloroplast
42NC_015359GTTT3493644937613Chlorella variabilis plastid
43NC_015359GTTT3989389894912Chlorella variabilis plastid
44NC_015359GTTT311349411350411Chlorella variabilis plastid
45NC_015402GTTT3566955670511Ptilidium pulcherrimum chloroplast
46NC_015403GTTT3574605747112Fistulifera sp. JPCC DA0580 chloroplast
47NC_015605GTTT3558375584913Nelumbo lutea chloroplast
48NC_015610GTTT3557155572713Nelumbo nucifera chloroplast
49NC_015645GTTT3340343404512Schizomeris leibleinii chloroplast
50NC_015645GTTT3346563466611Schizomeris leibleinii chloroplast
51NC_015645GTTT3832508326011Schizomeris leibleinii chloroplast
52NC_015645GTTT313706013707112Schizomeris leibleinii chloroplast
53NC_015645GTTT316226516227612Schizomeris leibleinii chloroplast
54NC_015645GTTT317293417294512Schizomeris leibleinii chloroplast
55NC_015892GTTT3112761128712Magnolia kwangsiensis chloroplast
56NC_015892GTTT3530815309313Magnolia kwangsiensis chloroplast
57NC_015894GTTT313964613965712Wolffiella lingulata chloroplast
58NC_016063GTTT3447534476311Cephalotaxus wilsoniana chloroplast DNA
59NC_016068GTTT37547755913Nicotiana undulata chloroplast
60NC_016068GTTT3241432415412Nicotiana undulata chloroplast
61NC_016068GTTT311281911283012Nicotiana undulata chloroplast
62NC_016468GTTT3106081061912Boea hygrometrica chloroplast
63NC_016668GTTT3338723388312Gossypium raimondii chloroplast
64NC_016670GTTT3340303404112Gossypium darwinii chloroplast
65NC_016670GTTT3540325404413Gossypium darwinii chloroplast
66NC_016690GTTT3339933400412Gossypium tomentosum chloroplast
67NC_016690GTTT3540555406713Gossypium tomentosum chloroplast
68NC_016692GTTT3339693398012Gossypium herbaceum subsp. africanum chloroplast
69NC_016692GTTT3539065391813Gossypium herbaceum subsp. africanum chloroplast
70NC_016703GTTT37800781011Phaeocystis antarctica strain CCMP1374 plastid
71NC_016703GTTT3824398245012Phaeocystis antarctica strain CCMP1374 plastid
72NC_016711GTTT3339913400212Gossypium mustelinum chloroplast
73NC_016711GTTT3539605397213Gossypium mustelinum chloroplast
74NC_016712GTTT3339433395412Gossypium arboreum chloroplast
75NC_016712GTTT3538665387813Gossypium arboreum chloroplast
76NC_016718GTTT3698766988611Rhynchoryza subulata plastid
77NC_016727GTTT311894611895712Silene vulgaris chloroplast
78NC_016729GTTT3468334684513Silene conica chloroplast
79NC_016732GTTT38105811612Dunaliella salina chloroplast
80NC_016732GTTT3266752668511Dunaliella salina chloroplast
81NC_016732GTTT3332553326511Dunaliella salina chloroplast
82NC_016732GTTT320170620171611Dunaliella salina chloroplast
83NC_016734GTTT31838184912Brassica napus chloroplast
84NC_016734GTTT39732974312Brassica napus chloroplast
85NC_017006GTTT3438694387911Mankyua chejuensis chloroplast
86NC_017609GTTT36780679112Phalaenopsis equestris chloroplast
87NC_017754GTTT3469094692113Eutreptiella gymnastica plastid
88NC_017894GTTT3338883389912Gossypium gossypioides chloroplast
89NC_018109GTTT3336423365312Gossypium incanum chloroplast
90NC_018109GTTT3532675327913Gossypium incanum chloroplast
91NC_018110GTTT3337523376312Gossypium somalense chloroplast
92NC_018110GTTT3507205073112Gossypium somalense chloroplast
93NC_018111GTTT3335613357212Gossypium capitis-viridis chloroplast
94NC_018112GTTT3337523376312Gossypium areysianum chloroplast
95NC_018112GTTT3507445075512Gossypium areysianum chloroplast
96NC_018113GTTT3337553376612Gossypium robinsonii chloroplast
97NC_018113GTTT3508655087612Gossypium robinsonii chloroplast
98NC_018117GTTT37509752113Datura stramonium chloroplast
99NC_018357GTTT3112971130812Magnolia denudata chloroplast
100NC_018357GTTT3531785319013Magnolia denudata chloroplast
101NC_018552GTTT37617762913Capsicum annuum chloroplast
102NC_018552GTTT3856488565811Capsicum annuum chloroplast
103NC_019616GTTT3122961230813Vaccinium macrocarpon plastid
104NC_019616GTTT310769910771012Vaccinium macrocarpon plastid
105NC_019649GTTT3265212653111Festuca ovina plastid
106NC_020018GTTT3589975900812Monomorphina aenigmatica strain UTEX1284 chloroplast
107NC_020019GTTT3531535316513Camellia sinensis chloroplast
108NC_020092GTTT39077908812Chrysanthemum x morifolium chloroplast
109NC_020316GTTT3113541136512Magnolia officinalis chloroplast
110NC_020316GTTT3532605327213Magnolia officinalis chloroplast
111NC_020317GTTT3113901140112Magnolia officinalis subsp. biloba voucher SC001 chloroplast
112NC_020317GTTT3532685328013Magnolia officinalis subsp. biloba voucher SC001 chloroplast
113NC_020318GTTT3112961130712Magnolia grandiflora voucher NJ016 chloroplast
114NC_020318GTTT3528505286213Magnolia grandiflora voucher NJ016 chloroplast
115NC_020320GTTT39079909012Chrysanthemum indicum voucher HeN001 chloroplast
116NC_020321GTTT310703310704412Taxus mairei voucher NN014 chloroplast
117NC_020361GTTT3923969240611Podocarpus totara chloroplast
118NC_020363GTTT3663706638011Zingiber spectabile plastid
119NC_020371GTTT3311673117812Pavlova lutheri chloroplast
120NC_020438GTTT3620746208411Gonium pectorale chloroplast
121NC_020438GTTT3707407075213Gonium pectorale chloroplast
122NC_020438GTTT310755310756513Gonium pectorale chloroplast
123NC_020460GTTT38045805612Euglena viridis culture-collection ATCC:PRA110 chloroplast
124NC_020460GTTT3310273103711Euglena viridis culture-collection ATCC:PRA110 chloroplast
125NC_020607GTTT39087909812Artemisia frigida chloroplast
126NC_020795GTTT3744327444211Chondrus crispus plastid complete genome
127NC_021101GTTT37956796611Francoa sonchifolia plastid
128NC_021101GTTT3519585197013Francoa sonchifolia plastid
129NC_021109GTTT311346911347911Pleodorina starrii plastid
130NC_021109GTTT313692113693111Pleodorina starrii plastid
131NC_021110GTTT3442644427411Cephalotaxus oliveri chloroplast
132NC_021121GTTT3724207243011Ardisia polysticta chloroplast
133NC_021425GTTT35419543012Tetracentron sinense chloroplast
134NC_021426GTTT35837584812Trochodendron aralioides chloroplast
135NC_021433GTTT36585659612Cymbidium mannii voucher KUN:YJB100602 chloroplast
136NC_021438GTTT3905689057811Gnetum montanum chloroplast
137NC_021438GTTT3911499115911Gnetum montanum chloroplast
138NC_021441GTTT3214002141112Taiwania flousiana chloroplast
139NC_021455GTTT3805458055612Prinsepia utilis plastid
140NC_021618GTTT3296002961011Grateloupia taiwanensis plastid
141NC_021618GTTT3728977290812Grateloupia taiwanensis plastid
142NC_021636GTTT3104391045113Glycine tomentella voucher CSIRO:G1403 chloroplast
143NC_021637GTTT37911792111Phaeocystis globosa strain Pg-G(A) chloroplast
144NC_021645GTTT3103081032013Glycine cyrtoloba voucher CSIRO:G1267 chloroplast
145NC_021646GTTT3102931030513Glycine stenophita voucher CSIRO:G1974 chloroplast
146NC_021647GTTT3104151042713Glycine canescens voucher CSIRO:G1232 chloroplast
147NC_021648GTTT3104181043013Glycine dolichocarpa voucher CSIRO:G1134 chloroplast
148NC_021649GTTT3104401045213Glycine falcata voucher CSIRO:G1718 chloroplast
149NC_021650GTTT3104201043213Glycine syndetika voucher CSIRO:G1300 chloroplast
150NC_022099GTTT3135301354112Medicago truncatula cultivar Jemalong 2HA plastid
151NC_022100GTTT3135481355912Medicago truncatula cultivar Borung plastid
152NC_022136GTTT3475954760612Lygodium japonicum chloroplast
153NC_000927GTTT317447517448612 Nephroselmis olivacea chloroplast
154NC_000927GTTT318342418343512 Nephroselmis olivacea chloroplast
155NC_000932GTTT3819748198411 Arabidopsis thaliana chloroplast
156NC_001319GTTT3271762718712 Marchantia polymorpha chloroplast
157NC_001319GTTT310547410548411 Marchantia polymorpha chloroplast
158NC_001568GTTT3432694327911 Epifagus virginiana chloroplast
159NC_001603GTTT3307373074711 Euglena gracilis chloroplast
160NC_001603GTTT3322973230812 Euglena gracilis chloroplast
161NC_001603GTTT3357823579211 Euglena gracilis chloroplast
162NC_001603GTTT3519765198712 Euglena gracilis chloroplast
163NC_001603GTTT310967810968912 Euglena gracilis chloroplast
164NC_001713GTTT3421054211612 Odontella sinensis chloroplast
165NC_001713GTTT3582645827512 Odontella sinensis chloroplast
166NC_001840GTTT3232932330412 Cyanidium caldarium chloroplast
167NC_001840GTTT313871213872312 Cyanidium caldarium chloroplast
168NC_001865GTTT3593225933312 Chlorella vulgaris chloroplast
169NC_001879GTTT3241302414112 Nicotiana tabacum plastid
170NC_001879GTTT311288311289311 Nicotiana tabacum plastid
171NC_002186GTTT3554475545711 Mesostigma viride chloroplast
172NC_002202GTTT3494614947313 Spinacia oleracea plastid
173NC_002652GTTT3690416905111 Euglena longa plastid
174NC_002693GTTT3804488045811 Oenothera elata subsp. hookeri plastid plastome I
175NC_002693GTTT313413213414312 Oenothera elata subsp. hookeri plastid plastome I
176NC_002693GTTT313415313416412 Oenothera elata subsp. hookeri plastid plastome I
177NC_002693GTTT313417413418512 Oenothera elata subsp. hookeri plastid plastome I
178NC_002693GTTT313419513420612 Oenothera elata subsp. hookeri plastid plastome I
179NC_003119GTTT3135301354112 Medicago truncatula chloroplast
180NC_004115GTTT3873118732212 Chaetosphaeridium globosum chloroplast
181NC_004561GTTT37470748213 Atropa belladonna chloroplast
182NC_004561GTTT37690770011 Atropa belladonna chloroplast
183NC_004561GTTT311362811363811 Atropa belladonna chloroplast
184NC_004993GTTT3106851069612 Calycanthus floridus var. glaucus chloroplast
185NC_004993GTTT3639876399711 Calycanthus floridus var. glaucus chloroplast
186NC_005087GTTT3212392124911 Physcomitrella patens subsp. patens chloroplast
187NC_006137GTTT314181014182112 Gracilaria tenuistipitata var. liui chloroplast
188NC_006861GTTT3602676027812 Huperzia lucidula chloroplast
189NC_007407GTTT3141091412012 Acorus calamus plastid
190NC_007499GTTT36769678012 Phalaenopsis aphrodite subsp. formosana chloroplast
191NC_007500GTTT3241282413912 Nicotiana sylvestris chloroplast
192NC_007500GTTT311288111289111 Nicotiana sylvestris chloroplast
193NC_007602GTTT37457746913 Nicotiana tomentosiformis chloroplast
194NC_007602GTTT3240522406312 Nicotiana tomentosiformis chloroplast
195NC_007602GTTT311266511267511 Nicotiana tomentosiformis chloroplast
196NC_007898GTTT37258727013 Solanum lycopersicum chloroplast
197NC_007898GTTT3237152372612 Solanum lycopersicum chloroplast
198NC_007942GTTT3104321044413 Glycine max chloroplast
199NC_007942GTTT312223612224611 Glycine max chloroplast
200NC_007943GTTT37302731413 Solanum bulbocastanum chloroplast
201NC_007943GTTT3237452375612 Solanum bulbocastanum chloroplast
202NC_007944GTTT3340583406912 Gossypium hirsutum chloroplast
203NC_007944GTTT3539445395613 Gossypium hirsutum chloroplast
204NC_007957GTTT3546295464113 Vitis vinifera chloroplast
205NC_007957GTTT3555855559511 Vitis vinifera chloroplast
206NC_008096GTTT37371738313 Solanum tuberosum chloroplast
207NC_008096GTTT3238572386812 Solanum tuberosum chloroplast
208NC_008099GTTT3465524656312 Oltmannsiellopsis viridis chloroplast
209NC_008099GTTT3487544876512 Oltmannsiellopsis viridis chloroplast
210NC_008101GTTT3127421275211 Scenedesmus obliquus chloroplast
211NC_008101GTTT3236592366911 Scenedesmus obliquus chloroplast
212NC_008101GTTT3609326094211 Scenedesmus obliquus chloroplast
213NC_008101GTTT3921649217411 Scenedesmus obliquus chloroplast
214NC_008101GTTT3956959570511 Scenedesmus obliquus chloroplast
215NC_008101GTTT312214512215511 Scenedesmus obliquus chloroplast
216NC_008101GTTT312443112444111 Scenedesmus obliquus chloroplast
217NC_008101GTTT313304913305911 Scenedesmus obliquus chloroplast
218NC_008101GTTT313846613847611 Scenedesmus obliquus chloroplast
219NC_008114GTTT3400414005212 Pseudendoclonium akinetum chloroplast
220NC_008114GTTT311097011098011 Pseudendoclonium akinetum chloroplast
221NC_008115GTTT3722317224111 Eucalyptus globulus subsp. globulus chloroplast
222NC_008116GTTT312159912160911 Staurastrum punctulatum chloroplast
223NC_008116GTTT314189714190812 Staurastrum punctulatum chloroplast
224NC_008117GTTT3799367994712 Zygnema circumcarinatum chloroplast
225NC_008117GTTT311730611731712 Zygnema circumcarinatum chloroplast
226NC_008117GTTT315572815573912 Zygnema circumcarinatum chloroplast
227NC_008235GTTT312766812767811 Populus alba chloroplast
228NC_008289GTTT3158261583712 Ostreococcus tauri chloroplast
229NC_008289GTTT3647686477811 Ostreococcus tauri chloroplast
230NC_008289GTTT3648616487111 Ostreococcus tauri chloroplast
231NC_008325GTTT3102421025312 Daucus carota chloroplast
232NC_008326GTTT3113621137312 Liriodendron tulipifera chloroplast
233NC_008326GTTT3532185323013 Liriodendron tulipifera chloroplast
234NC_008334GTTT3539825399413 Citrus sinensis chloroplast
235NC_008334GTTT3713377134812 Citrus sinensis chloroplast
236NC_008336GTTT3102361024712 Nandina domestica chloroplast
237NC_008359GTTT3534015341313 Morus indica chloroplast
238NC_008372GTTT3510455105511 Stigeoclonium helveticum chloroplast
239NC_008372GTTT3518825189312 Stigeoclonium helveticum chloroplast
240NC_008372GTTT3556465565712 Stigeoclonium helveticum chloroplast
241NC_008456GTTT3109111092212 Drimys granadensis chloroplast
242NC_008457GTTT3105521056312 Piper cenocladum chloroplast
243NC_008590GTTT310964010965011 Hordeum vulgare subsp. vulgare chloroplast
244NC_008641GTTT3340063401712 Gossypium barbadense chloroplast
245NC_008641GTTT3539975400913 Gossypium barbadense chloroplast
246NC_008788GTTT3102601027112 Nuphar advena chloroplast
247NC_008796GTTT33671368212 Ranunculus macranthus chloroplast
248NC_008796GTTT3511785118811 Ranunculus macranthus chloroplast
249NC_008822GTTT3113241133411 Chlorokybus atmophyticus chloroplast
250NC_008822GTTT3459034591311 Chlorokybus atmophyticus chloroplast
251NC_008822GTTT313103413104512 Chlorokybus atmophyticus chloroplast
252NC_009143GTTT312820012821011 Populus trichocarpa chloroplast
253NC_009266GTTT312432912433911 Aethionema grandiflorum chloroplast
254NC_009268GTTT3102181022912 Arabis hirsuta chloroplast
255NC_009270GTTT3428044281512 Capsella bursa-pastoris chloroplast
256NC_009271GTTT39838984912 Crucihimalaya wallichii chloroplast
257NC_009272GTTT39406941712 Draba nemorosa chloroplast
258NC_009274GTTT39185919612 Lobularia maritima chloroplast
259NC_009275GTTT3484674847812 Nasturtium officinale chloroplast
260NC_009599GTTT3153801539112 Buxus microphylla chloroplast
261NC_009681GTTT3233062331611 Leptosira terrestris chloroplast
262NC_009681GTTT3386633867412 Leptosira terrestris chloroplast
263NC_009766GTTT3560305604011 Cuscuta reflexa chloroplast
264NC_010093GTTT3137851379612 Acorus americanus chloroplast
265NC_010323GTTT3111411115212 Carica papaya chloroplast
266NC_010358GTTT3796527966211 Oenothera argillicola chloroplast
267NC_010361GTTT3801208013011 Oenothera biennis chloroplast
268NC_010362GTTT3788757888511 Oenothera parviflora chloroplast
269NC_010433GTTT313230513231713 Manihot esculenta chloroplast
270NC_010442GTTT314661114662111 Trachelium caeruleum chloroplast
271NC_010772GTTT313758413759411 Heterosigma akashiwo chloroplast
272NC_010776GTTT3516185163013 Fagopyrum esculentum subsp. ancestrale chloroplast
273NC_011031GTTT34041405111 Oedogonium cardiacum chloroplast
274NC_011031GTTT36733674311 Oedogonium cardiacum chloroplast
275NC_011031GTTT39405941511 Oedogonium cardiacum chloroplast
276NC_011031GTTT3525415255212 Oedogonium cardiacum chloroplast
277NC_011031GTTT313368713369812 Oedogonium cardiacum chloroplast
278NC_011031GTTT315952115953212 Oedogonium cardiacum chloroplast
279NC_011163GTTT312005712006711 Cicer arietinum chloroplast
280NC_011600GTTT3519855199511 Vaucheria litorea chloroplast
281NC_011713GTTT3173681737912 Festuca arundinacea chloroplast
282NC_011828GTTT3258262583712 Trifolium subterraneum chloroplast
283NC_011828GTTT311338811339811 Trifolium subterraneum chloroplast
284NC_011942GTTT35472548211 Gnetum parvifolium chloroplast
285NC_011942GTTT310483110484313 Gnetum parvifolium chloroplast
286NC_012097GTTT3123371234812 Pycnococcus provasolii chloroplast
287NC_012097GTTT3523525236312 Pycnococcus provasolii chloroplast
288NC_012101GTTT3426134262513 Monomastix sp. OKE-1 chloroplast
289NC_012101GTTT3746667467611 Monomastix sp. OKE-1 chloroplast
290NC_012568GTTT3381303814112 Micromonas pusilla CCMP1545 chloroplast
291NC_012615GTTT312951212952211 Megaleranthis saniculifolia chloroplast
292NC_012927GTTT36769678012 Bambusa oldhamii chloroplast
293NC_012978GTTT3497874979711 Parachlorella kessleri chloroplast
294NC_013359GTTT3922099221911 Bryopsis hypnoides chloroplast
295NC_013703GTTT3150701508112 Cryptomonas paramecium plastid
296NC_013703GTTT3309223093312 Cryptomonas paramecium plastid
297NC_014056GTTT36459647012 Oncidium Gower Ramsey chloroplast
298NC_014057GTTT311702711703711 Pisum sativum chloroplast