ChloroMitoSSRDB 2.0 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

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Chloroplast Motifs - Imperfect GTA Repeats

S.NoSequence IDMotifIterationsStartEndTract LengthSequence Name
1NC_004543GTA10443224435130 Anthoceros formosae chloroplast
2NC_011087GTA574248774250115Paulinella chromatophora chromatophore
3NC_021618GTA5903749038714Grateloupia taiwanensis plastid
4NC_011087GTA415003715004812Paulinella chromatophora chromatophore
5NC_011087GTA434180034181112Paulinella chromatophora chromatophore
6NC_011087GTA444262844263811Paulinella chromatophora chromatophore
7NC_011087GTA444556344557311Paulinella chromatophora chromatophore
8NC_014267GTA4306413065111Kryptoperidinium foliaceum chloroplast
9NC_014575GTA4587935880412Cedrus deodara chloroplast
10NC_014589GTA4751097511911Cathaya argyrophylla chloroplast
11NC_014674GTA4706367064611Castanea mollissima chloroplast
12NC_014675GTA4837908380112Isoetes flaccida chloroplast
13NC_014699GTA4887838879513Equisetum arvense chloroplast
14NC_014807GTA4691306914011Corynocarpus laevigata chloroplast
15NC_015113GTA4296072961812Anthriscus cerefolium chloroplast
16NC_015401GTA4464424645211Olea europaea subsp. europaea plastid
17NC_015604GTA4464424645211Olea europaea subsp. cuspidata chloroplast
18NC_015605GTA4489124892211Nelumbo lutea chloroplast
19NC_015608GTA4465104652011Olea woodiana subsp. woodiana chloroplast
20NC_015610GTA4355583556811Nelumbo nucifera chloroplast
21NC_015610GTA4488784888811Nelumbo nucifera chloroplast
22NC_015623GTA4464534646311Olea europaea subsp. maroccana chloroplast
23NC_015803GTA413015713016812Indocalamus longiauritus plastid
24NC_015817GTA413016813017912Phyllostachys edulis chloroplast
25NC_015820GTA413018813019912Acidosasa purpurea chloroplast
26NC_015826GTA413032813033912Phyllostachys nigra var. henonis chloroplast
27NC_015830GTA412998312999412Bambusa emeiensis chloroplast
28NC_015831GTA412993112994212Ferrocalamus rimosivaginus plastid
29NC_015891GTA415424815425912Spirodela polyrhiza chloroplast
30NC_015892GTA4349113492111Magnolia kwangsiensis chloroplast
31NC_015894GTA4194651947612Wolffiella lingulata chloroplast
32NC_015894GTA415495315496412Wolffiella lingulata chloroplast
33NC_015899GTA415416515417612Wolffia australiana chloroplast
34NC_015990GTA412897312898412Panicum virgatum chloroplast
35NC_016058GTA4807168072712Larix decidua chloroplast
36NC_016063GTA411639211640312Cephalotaxus wilsoniana chloroplast DNA
37NC_016064GTA4117341174512Pseudotsuga sinensis var. wilsoniana chloroplast
38NC_016064GTA411173011174112Pseudotsuga sinensis var. wilsoniana chloroplast
39NC_016065GTA4685366854712Taiwania cryptomerioides chloroplast DNA
40NC_016068GTA4464904650011Nicotiana undulata chloroplast
41NC_016069GTA42053206311Picea morrisonicola chloroplast
42NC_016069GTA4140231403311Picea morrisonicola chloroplast
43NC_016069GTA4747837479412Picea morrisonicola chloroplast
44NC_016433GTA4452044521411Sesamum indicum chloroplast
45NC_016471GTA4769527696312Neottia nidus-avis plastid
46NC_016677GTA412795012796112Leersia tisserantii plastid
47NC_016699GTA413019413020512Phyllostachys propinqua chloroplast
48NC_016708GTA4320463205611Millettia pinnata chloroplast
49NC_016718GTA412769912771012Rhynchoryza subulata plastid
50NC_016729GTA4262252623511Silene conica chloroplast
51NC_016730GTA4277802779011Silene latifolia chloroplast
52NC_016732GTA45346535712Dunaliella salina chloroplast
53NC_016753GTA414775314776412Colocasia esculenta chloroplast
54NC_016927GTA412600312601412Oryza meridionalis chloroplast
55NC_016986GTA415097215098312Ginkgo biloba chloroplast
56NC_017602GTA414209314210412Elaeis guineensis chloroplast
57NC_017609GTA413397913399012Phalaenopsis equestris chloroplast
58NC_017835GTA412598912600012Oryza rufipogon chloroplast
59NC_018114GTA412974412975512Erycina pusilla chloroplast
60NC_018117GTA4463034631311Datura stramonium chloroplast
61NC_018357GTA4349953500511Magnolia denudata chloroplast
62NC_018541GTA414266414267512Elodea canadensis chloroplast
63NC_018552GTA4463024631211Capsicum annuum chloroplast
64NC_018552GTA4463174632711Capsicum annuum chloroplast
65NC_019648GTA412585612586712Festuca altissima plastid
66NC_019649GTA412377512378612Festuca ovina plastid
67NC_019650GTA412586012587112Festuca pratensis plastid
68NC_019651GTA412574612575712Lolium multiflorum plastid
69NC_020098GTA4456174562711Tectona grandis chloroplast
70NC_020146GTA4549105492112Equisetum hyemale chloroplast
71NC_020146GTA4561995621012Equisetum hyemale chloroplast
72NC_020147GTA41477148711Ophioglossum californicum chloroplast
73NC_020147GTA4428324284312Ophioglossum californicum chloroplast
74NC_020152GTA4706157062511Quercus rubra plastid
75NC_020316GTA4351063511611Magnolia officinalis chloroplast
76NC_020317GTA4351003511011Magnolia officinalis subsp. biloba voucher SC001 chloroplast
77NC_020318GTA4347253473511Magnolia grandiflora voucher NJ016 chloroplast
78NC_020319GTA4115931160412Cycas revoluta chloroplast
79NC_020341GTA412942412943512Arundinaria gigantea chloroplast
80NC_020362GTA412553512554511Heliconia collinsiana plastid
81NC_020362GTA414722314723412Heliconia collinsiana plastid
82NC_020363GTA414171014172112Zingiber spectabile plastid
83NC_020364GTA414280914282012Pseudophoenix vinifera plastid
84NC_020365GTA414220814221912Calamus caryotoides plastid
85NC_020366GTA414328014329112Bismarckia nobilis plastid
86NC_020367GTA414283714284812Dasypogon bromeliifolius plastid
87NC_020371GTA4920469205712Pavlova lutheri chloroplast
88NC_020431GTA4440104402011Salvia miltiorrhiza chloroplast
89NC_020438GTA4722457225511Gonium pectorale chloroplast
90NC_020795GTA411751711752711Chondrus crispus plastid complete genome
91NC_021101GTA413021713022812Francoa sonchifolia plastid
92NC_021110GTA411471511472612Cephalotaxus oliveri chloroplast
93NC_021372GTA413137913139012Pharus latifolius chloroplast
94NC_021425GTA4343823439211Tetracentron sinense chloroplast
95NC_021425GTA4472694727911Tetracentron sinense chloroplast
96NC_021426GTA4484074841711Trochodendron aralioides chloroplast
97NC_021429GTA414187814188912Cymbidium aloifolium voucher KUN:YJB100604 chloroplast
98NC_021430GTA414050714051812Cymbidium sinense voucher KUN:YJB100605 chloroplast
99NC_021431GTA414059514060612Cymbidium tortisepalum voucher KUN:HJL091027 chloroplast
100NC_021432GTA414128914130012Cymbidium tracyanum voucher KUN:YJB100606 chloroplast
101NC_021433GTA414054314055412Cymbidium mannii voucher KUN:YJB100602 chloroplast
102NC_021437GTA4568115682212Cunninghamia lanceolata chloroplast
103NC_021437GTA4687026871211Cunninghamia lanceolata chloroplast
104NC_021438GTA410539310540412Gnetum montanum chloroplast
105NC_021439GTA410981710982812Pinus massoniana chloroplast
106NC_021440GTA4333213333212Pinus taeda chloroplast
107NC_021440GTA411162511163612Pinus taeda chloroplast
108NC_021441GTA4677906780112Taiwania flousiana chloroplast
109NC_021936GTA414189114190212Najas flexilis chloroplast
110NC_000925GTA4177481775912 Porphyra purpurea chloroplast
111NC_001319GTA4433374334913 Marchantia polymorpha chloroplast
112NC_001320GTA412596512597612 Oryza sativa Japonica Group plastid
113NC_001603GTA4583325834312 Euglena gracilis chloroplast
114NC_001631GTA410982710983812 Pinus thunbergii chloroplast
115NC_001666GTA412975612976712 Zea mays chloroplast
116NC_001675GTA45784579512 Cyanophora paradoxa cyanelle
117NC_001675GTA4255162552712 Cyanophora paradoxa cyanelle
118NC_001713GTA4351603517011 Odontella sinensis chloroplast
119NC_001840GTA4161321614211 Cyanidium caldarium chloroplast
120NC_001879GTA4464844649411 Nicotiana tabacum plastid
121NC_002762GTA412598412599512 Triticum aestivum chloroplast
122NC_004543GTA4635306354011 Anthoceros formosae chloroplast
123NC_004561GTA4462394624911 Atropa belladonna chloroplast
124NC_004677GTA4323373234812 Pinus koraiensis chloroplast
125NC_004677GTA410677310678412 Pinus koraiensis chloroplast
126NC_004766GTA4342313424111 Adiantum capillus-veneris chloroplast
127NC_004799GTA411306111307313 Cyanidioschyzon merolae strain 10D chloroplast
128NC_004823GTA4248792489012 Eimeria tenella strain Penn State apicoplast
129NC_005086GTA414825914827012 Amborella trichopoda chloroplast
130NC_005087GTA435336412 Physcomitrella patens subsp. patens chloroplast
131NC_005878GTA4509955100612 Saccharum hybrid cultivar SP-80-3280 chloroplast
132NC_005973GTA412593912595012 Oryza nivara chloroplast
133NC_006050GTA414557614558712 Nymphaea alba chloroplast
134NC_006084GTA413055113056212 Saccharum hybrid cultivar NCo 310 chloroplast
135NC_006861GTA411948711949812 Huperzia lucidula chloroplast
136NC_007407GTA412718612719712 Acorus calamus plastid
137NC_007499GTA413401413402512 Phalaenopsis aphrodite subsp. formosana chloroplast
138NC_007500GTA4464824649211 Nicotiana sylvestris chloroplast
139NC_007602GTA4464094641911 Nicotiana tomentosiformis chloroplast
140NC_007898GTA4455364554611 Solanum lycopersicum chloroplast
141NC_007943GTA4455574556711 Solanum bulbocastanum chloroplast
142NC_007957GTA4483484835811 Vitis vinifera chloroplast
143NC_007957GTA416079416080613 Vitis vinifera chloroplast
144NC_008096GTA4456734568311 Solanum tuberosum chloroplast
145NC_008099GTA413854013855213 Oltmannsiellopsis viridis chloroplast
146NC_008117GTA413557213558211 Zygnema circumcarinatum chloroplast
147NC_008155GTA412594512595612 Oryza sativa Indica Group chloroplast
148NC_008289GTA4502725028312 Ostreococcus tauri chloroplast
149NC_008326GTA4350823509211 Liriodendron tulipifera chloroplast
150NC_008335GTA4489794898911 Platanus occidentalis chloroplast
151NC_008336GTA4454284543811 Nandina domestica chloroplast
152NC_008336GTA412951112952212 Nandina domestica chloroplast
153NC_008336GTA412954712955812 Nandina domestica chloroplast
154NC_008336GTA412956512957612 Nandina domestica chloroplast
155NC_008336GTA412958312959412 Nandina domestica chloroplast
156NC_008372GTA4555465555712 Stigeoclonium helveticum chloroplast
157NC_008407GTA4502665027611 Jasminum nudiflorum chloroplast
158NC_008454GTA416637816638912 Pelargonium x hortorum chloroplast
159NC_008535GTA4453194532911 Coffea arabica chloroplast
160NC_008588GTA465867013 Phaeodactylum tricornutum chloroplast
161NC_008590GTA412759612760712 Hordeum vulgare subsp. vulgare chloroplast
162NC_008591GTA412761112762212 Agrostis stolonifera chloroplast
163NC_008602GTA413064213065312 Sorghum bicolor chloroplast
164NC_008788GTA4640766408813 Nuphar advena chloroplast
165NC_008788GTA414626814627912 Nuphar advena chloroplast
166NC_008796GTA4447874479711 Ranunculus macranthus chloroplast
167NC_008829GTA4455484556013 Angiopteris evecta chloroplast
168NC_009573GTA4875558756511 Rhodomonas salina chloroplast
169NC_009599GTA4473844739411 Buxus microphylla chloroplast
170NC_009600GTA414475914477012 Illicium oligandrum chloroplast
171NC_009601GTA413819513820612 Dioscorea elephantipes chloroplast
172NC_009618GTA4843458435612 Cycas taitungensis chloroplast
173NC_009618GTA414975414976512 Cycas taitungensis chloroplast
174NC_009950GTA412585212586312 Lolium perenne chloroplast
175NC_009962GTA414234014235112 Ceratophyllum demersum chloroplast
176NC_010093GTA412685612686712 Acorus americanus chloroplast
177NC_010109GTA415177315178412 Lemna minor chloroplast
178NC_010548GTA410922010923112 Cryptomeria japonica chloroplast
179NC_010654GTA410970310971412 Welwitschia mirabilis chloroplast
180NC_010776GTA4672026721615 Fagopyrum esculentum subsp. ancestrale chloroplast
181NC_011031GTA414512414513613 Oedogonium cardiacum chloroplast
182NC_011032GTA412567712568812 Brachypodium distachyon chloroplast
183NC_011152GTA4327643277512 Picea sitchensis chloroplast
184NC_011152GTA411094911096012 Picea sitchensis chloroplast
185NC_011153GTA4324813249212 Pinus contorta chloroplast
186NC_011153GTA411059611060712 Pinus contorta chloroplast
187NC_011154GTA4321823219312 Pinus gerardiana chloroplast
188NC_011154GTA410727810728912 Pinus gerardiana chloroplast
189NC_011155GTA4320723208312 Pinus krempfii chloroplast
190NC_011155GTA410670410671512 Pinus krempfii chloroplast
191NC_011156GTA4324183242912 Pinus lambertiana chloroplast
192NC_011156GTA410690310691412 Pinus lambertiana chloroplast
193NC_011158GTA4317663177712 Pinus monophylla chloroplast
194NC_011158GTA410632010633112 Pinus monophylla chloroplast
195NC_011159GTA4318573186812 Pinus nelsonii chloroplast
196NC_011159GTA410636010637112 Pinus nelsonii chloroplast
197NC_011713GTA412659112660212 Festuca arundinacea chloroplast
198NC_011930GTA4305583056912 Keteleeria davidiana chloroplast
199NC_011942GTA4477934780412 Gnetum parvifolium chloroplast
200NC_011954GTA410069110070212 Ephedra equisetina chloroplast
201NC_012927GTA412984412985512 Bambusa oldhamii chloroplast
202NC_013086GTA4575785758912 Selaginella moellendorffii plastid
203NC_013086GTA413258613259611 Selaginella moellendorffii plastid
204NC_013088GTA412992312993412 Dendrocalamus latiflorus chloroplast
205NC_013273GTA413011413012512 Coix lacryma-jobi chloroplast
206NC_013823GTA413365913367012 Typha latifolia chloroplast
207NC_013823GTA414646214647312 Typha latifolia chloroplast
208NC_013991GTA414339314340412 Phoenix dactylifera chloroplast
209NC_014056GTA413171913173012 Oncidium Gower Ramsey chloroplast
210NC_014062GTA413030013031112 Anomochloa marantoidea chloroplast
211NC_013707GTA4464164642611 Olea europaea chloroplast