ChloroMitoSSRDB 2.0 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

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Chloroplast Motifs - Imperfect TTGC Repeats

S.NoSequence IDMotifIterationsStartEndTract LengthSequence Name
1NC_020795TTGC4534925350615Chondrus crispus plastid complete genome
2NC_011087TTGC349252049253011Paulinella chromatophora chromatophore
3NC_011087TTGC393024793025913Paulinella chromatophora chromatophore
4NC_011087TTGC396636296637312Paulinella chromatophora chromatophore
5NC_014348TTGC3121331214311Pteridium aquilinum subsp. aquilinum chloroplast
6NC_014570TTGC3377163772611Eucalyptus grandis chloroplast
7NC_014582TTGC3191621917211Monsonia speciosa plastid
8NC_014592TTGC3250452505511Cheilanthes lindheimeri chloroplast
9NC_014674TTGC3391693917911Castanea mollissima chloroplast
10NC_014676TTGC3365703658011Theobroma cacao chloroplast
11NC_014697TTGC3360503606011Prunus persica chloroplast
12NC_015084TTGC3782967830611Coccomyxa sp. C-169 plastid
13NC_015204TTGC3363703638011Gossypium thurberi chloroplast
14NC_015206TTGC3354883549811Fragaria vesca subsp. vesca chloroplast
15NC_015308TTGC3380063801611Hevea brasiliensis chloroplast
16NC_015996TTGC3374743748411Pyrus pyrifolia chloroplast
17NC_016471TTGC3878588786811Neottia nidus-avis plastid
18NC_016668TTGC3362683627811Gossypium raimondii chloroplast
19NC_016670TTGC3364303644011Gossypium darwinii chloroplast
20NC_016690TTGC3363933640311Gossypium tomentosum chloroplast
21NC_016692TTGC3363583636811Gossypium herbaceum subsp. africanum chloroplast
22NC_016711TTGC3363853639511Gossypium mustelinum chloroplast
23NC_016712TTGC3363323634211Gossypium arboreum chloroplast
24NC_016727TTGC3327933280311Silene vulgaris chloroplast
25NC_016729TTGC3312473125711Silene conica chloroplast
26NC_016730TTGC3328563286611Silene latifolia chloroplast
27NC_016736TTGC3387733878311Ricinus communis chloroplast
28NC_016921TTGC3361303614011Pentactina rupicola chloroplast
29NC_017609TTGC314587014588011Phalaenopsis equestris chloroplast
30NC_017894TTGC3362843629411Gossypium gossypioides chloroplast
31NC_018109TTGC3360333604311Gossypium incanum chloroplast
32NC_018110TTGC3361483615811Gossypium somalense chloroplast
33NC_018111TTGC3359573596711Gossypium capitis-viridis chloroplast
34NC_018112TTGC3361483615811Gossypium areysianum chloroplast
35NC_018113TTGC3361513616111Gossypium robinsonii chloroplast
36NC_018114TTGC314011214012211Erycina pusilla chloroplast
37NC_018569TTGC3923239233412Trebouxiophyceae sp. MX-AZ01 chloroplast
38NC_018766TTGC3355033551311Fragaria vesca subsp. bracteata chloroplast
39NC_018767TTGC3354883549811Fragaria mandshurica plastid
40NC_019601TTGC3354423545211Fragaria chiloensis chloroplast
41NC_019602TTGC3354413545111Fragaria virginiana chloroplast
42NC_019649TTGC3304213043212Festuca ovina plastid
43NC_020152TTGC3391383914811Quercus rubra plastid
44NC_020795TTGC3522575226711Chondrus crispus plastid complete genome
45NC_020795TTGC311098311099311Chondrus crispus plastid complete genome
46NC_021101TTGC3352313524111Francoa sonchifolia plastid
47NC_021109TTGC3325233253412Pleodorina starrii plastid
48NC_021429TTGC315386715387711Cymbidium aloifolium voucher KUN:YJB100604 chloroplast
49NC_021430TTGC315251115252111Cymbidium sinense voucher KUN:YJB100605 chloroplast
50NC_021431TTGC315259015260011Cymbidium tortisepalum voucher KUN:HJL091027 chloroplast
51NC_021432TTGC315327515328511Cymbidium tracyanum voucher KUN:YJB100606 chloroplast
52NC_021433TTGC315226115227111Cymbidium mannii voucher KUN:YJB100602 chloroplast
53NC_021618TTGC315552215553211Grateloupia taiwanensis plastid
54NC_021618TTGC318981018982112Grateloupia taiwanensis plastid
55NC_001675TTGC310032210033211 Cyanophora paradoxa cyanelle
56NC_001713TTGC3123961240611 Odontella sinensis chloroplast
57NC_004543TTGC3518945190411 Anthoceros formosae chloroplast
58NC_004799TTGC3581245813411 Cyanidioschyzon merolae strain 10D chloroplast
59NC_006137TTGC312869712870711 Gracilaria tenuistipitata var. liui chloroplast
60NC_006861TTGC3808208083011 Huperzia lucidula chloroplast
61NC_007499TTGC314585614586611 Phalaenopsis aphrodite subsp. formosana chloroplast
62NC_007944TTGC3364593646911 Gossypium hirsutum chloroplast
63NC_007957TTGC3379663797611 Vitis vinifera chloroplast
64NC_008097TTGC3603966040611 Chara vulgaris chloroplast
65NC_008115TTGC3378473785711 Eucalyptus globulus subsp. globulus chloroplast
66NC_008235TTGC3343063431611 Populus alba chloroplast
67NC_008334TTGC3376553766511 Citrus sinensis chloroplast
68NC_008454TTGC3474594746911 Pelargonium x hortorum chloroplast
69NC_008641TTGC3363953640511 Gossypium barbadense chloroplast
70NC_008829TTGC3207742078411 Angiopteris evecta chloroplast
71NC_009143TTGC3346373464711 Populus trichocarpa chloroplast
72NC_009681TTGC3892608927112 Leptosira terrestris chloroplast
73NC_010323TTGC3368153682511 Carica papaya chloroplast
74NC_010433TTGC3371793718911 Manihot esculenta chloroplast
75NC_010548TTGC310559910561012 Cryptomeria japonica chloroplast
76NC_010776TTGC3347423475211 Fagopyrum esculentum subsp. ancestrale chloroplast
77NC_012224TTGC3390653907511 Jatropha curcas chloroplast
78NC_014056TTGC314343914344911 Oncidium Gower Ramsey chloroplast