Chloroplast Motifs - Imperfect CTA Repeats
| S.No | Sequence ID | Motif | Iterations | Start | End | Tract Length | Sequence Name |
| 1 | NC_013086 | CTA | 11 | 92168 | 92200 | 33 | Selaginella moellendorffii plastid |
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| 2 | NC_011087 | CTA | 5 | 110522 | 110536 | 15 | Paulinella chromatophora chromatophore |
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| 3 | NC_011087 | CTA | 5 | 204515 | 204529 | 15 | Paulinella chromatophora chromatophore |
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| 4 | NC_011087 | CTA | 5 | 539143 | 539156 | 14 | Paulinella chromatophora chromatophore |
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| 5 | NC_015113 | CTA | 5 | 28612 | 28625 | 14 | Anthriscus cerefolium chloroplast |
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| 6 | NC_008097 | CTA | 5 | 117948 | 117961 | 14 | Chara vulgaris chloroplast |
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| 7 | NC_011087 | CTA | 4 | 104207 | 104218 | 12 | Paulinella chromatophora chromatophore |
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| 8 | NC_011087 | CTA | 4 | 231868 | 231878 | 11 | Paulinella chromatophora chromatophore |
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| 9 | NC_011087 | CTA | 4 | 381993 | 382004 | 12 | Paulinella chromatophora chromatophore |
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| 10 | NC_011087 | CTA | 4 | 432747 | 432758 | 12 | Paulinella chromatophora chromatophore |
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| 11 | NC_011087 | CTA | 4 | 569692 | 569703 | 12 | Paulinella chromatophora chromatophore |
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| 12 | NC_011087 | CTA | 4 | 590876 | 590887 | 12 | Paulinella chromatophora chromatophore |
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| 13 | NC_011087 | CTA | 4 | 704607 | 704618 | 12 | Paulinella chromatophora chromatophore |
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| 14 | NC_011087 | CTA | 4 | 878343 | 878354 | 12 | Paulinella chromatophora chromatophore |
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| 15 | NC_011087 | CTA | 4 | 959977 | 959988 | 12 | Paulinella chromatophora chromatophore |
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| 16 | NC_011087 | CTA | 4 | 1001538 | 1001549 | 12 | Paulinella chromatophora chromatophore |
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| 17 | NC_014287 | CTA | 4 | 17646 | 17657 | 12 | Durinskia baltica chloroplast |
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| 18 | NC_014575 | CTA | 4 | 76059 | 76069 | 11 | Cedrus deodara chloroplast |
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| 19 | NC_014582 | CTA | 4 | 82256 | 82266 | 11 | Monsonia speciosa plastid |
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| 20 | NC_014674 | CTA | 4 | 35725 | 35736 | 12 | Castanea mollissima chloroplast |
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| 21 | NC_015139 | CTA | 4 | 79 | 89 | 11 | Brassica rapa subsp. pekinensis chloroplast |
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| 22 | NC_015403 | CTA | 4 | 111911 | 111921 | 11 | Fistulifera sp. JPCC DA0580 chloroplast |
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| 23 | NC_015543 | CTA | 4 | 118288 | 118299 | 12 | Jacobaea vulgaris chloroplast |
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| 24 | NC_015605 | CTA | 4 | 44473 | 44484 | 12 | Nelumbo lutea chloroplast |
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| 25 | NC_015605 | CTA | 4 | 70960 | 70971 | 12 | Nelumbo lutea chloroplast |
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| 26 | NC_015610 | CTA | 4 | 44439 | 44450 | 12 | Nelumbo nucifera chloroplast |
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| 27 | NC_015610 | CTA | 4 | 71025 | 71036 | 12 | Nelumbo nucifera chloroplast |
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| 28 | NC_015803 | CTA | 4 | 21187 | 21198 | 12 | Indocalamus longiauritus plastid |
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| 29 | NC_015817 | CTA | 4 | 21218 | 21229 | 12 | Phyllostachys edulis chloroplast |
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| 30 | NC_015820 | CTA | 4 | 21235 | 21246 | 12 | Acidosasa purpurea chloroplast |
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| 31 | NC_015826 | CTA | 4 | 21199 | 21210 | 12 | Phyllostachys nigra var. henonis chloroplast |
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| 32 | NC_015830 | CTA | 4 | 20814 | 20825 | 12 | Bambusa emeiensis chloroplast |
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| 33 | NC_015831 | CTA | 4 | 21266 | 21277 | 12 | Ferrocalamus rimosivaginus plastid |
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| 34 | NC_015891 | CTA | 4 | 44842 | 44853 | 12 | Spirodela polyrhiza chloroplast |
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| 35 | NC_015891 | CTA | 4 | 87205 | 87215 | 11 | Spirodela polyrhiza chloroplast |
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| 36 | NC_015894 | CTA | 4 | 44685 | 44696 | 12 | Wolffiella lingulata chloroplast |
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| 37 | NC_015894 | CTA | 4 | 158681 | 158691 | 11 | Wolffiella lingulata chloroplast |
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| 38 | NC_015899 | CTA | 4 | 43854 | 43865 | 12 | Wolffia australiana chloroplast |
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| 39 | NC_015899 | CTA | 4 | 87362 | 87372 | 11 | Wolffia australiana chloroplast |
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| 40 | NC_015899 | CTA | 4 | 157865 | 157875 | 11 | Wolffia australiana chloroplast |
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| 41 | NC_015990 | CTA | 4 | 20334 | 20345 | 12 | Panicum virgatum chloroplast |
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| 42 | NC_016058 | CTA | 4 | 98039 | 98049 | 11 | Larix decidua chloroplast |
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| 43 | NC_016064 | CTA | 4 | 6338 | 6348 | 11 | Pseudotsuga sinensis var. wilsoniana chloroplast |
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| 44 | NC_016677 | CTA | 4 | 20071 | 20082 | 12 | Leersia tisserantii plastid |
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| 45 | NC_016677 | CTA | 4 | 108950 | 108961 | 12 | Leersia tisserantii plastid |
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| 46 | NC_016699 | CTA | 4 | 21207 | 21218 | 12 | Phyllostachys propinqua chloroplast |
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| 47 | NC_016718 | CTA | 4 | 19959 | 19970 | 12 | Rhynchoryza subulata plastid |
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| 48 | NC_016731 | CTA | 4 | 30949 | 30960 | 12 | Synedra acus chloroplast |
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| 49 | NC_016732 | CTA | 4 | 29066 | 29077 | 12 | Dunaliella salina chloroplast |
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| 50 | NC_016735 | CTA | 4 | 21696 | 21706 | 11 | Fucus vesiculosus chloroplast |
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| 51 | NC_016927 | CTA | 4 | 18751 | 18762 | 12 | Oryza meridionalis chloroplast |
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| 52 | NC_016986 | CTA | 4 | 54829 | 54839 | 11 | Ginkgo biloba chloroplast |
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| 53 | NC_017609 | CTA | 4 | 52130 | 52141 | 12 | Phalaenopsis equestris chloroplast |
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| 54 | NC_017835 | CTA | 4 | 18746 | 18757 | 12 | Oryza rufipogon chloroplast |
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| 55 | NC_018111 | CTA | 4 | 41931 | 41942 | 12 | Gossypium capitis-viridis chloroplast |
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| 56 | NC_018114 | CTA | 4 | 50947 | 50958 | 12 | Erycina pusilla chloroplast |
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| 57 | NC_018541 | CTA | 4 | 41481 | 41492 | 12 | Elodea canadensis chloroplast |
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| 58 | NC_019616 | CTA | 4 | 88089 | 88100 | 12 | Vaccinium macrocarpon plastid |
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| 59 | NC_019616 | CTA | 4 | 141124 | 141135 | 12 | Vaccinium macrocarpon plastid |
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| 60 | NC_020147 | CTA | 4 | 60421 | 60432 | 12 | Ophioglossum californicum chloroplast |
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| 61 | NC_020152 | CTA | 4 | 35741 | 35752 | 12 | Quercus rubra plastid |
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| 62 | NC_020319 | CTA | 4 | 30739 | 30750 | 12 | Cycas revoluta chloroplast |
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| 63 | NC_020341 | CTA | 4 | 21186 | 21197 | 12 | Arundinaria gigantea chloroplast |
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| 64 | NC_020361 | CTA | 4 | 130463 | 130473 | 11 | Podocarpus totara chloroplast |
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| 65 | NC_020363 | CTA | 4 | 127324 | 127335 | 12 | Zingiber spectabile plastid |
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| 66 | NC_020438 | CTA | 4 | 201831 | 201841 | 11 | Gonium pectorale chloroplast |
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| 67 | NC_020795 | CTA | 4 | 12662 | 12674 | 13 | Chondrus crispus plastid complete genome |
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| 68 | NC_020795 | CTA | 4 | 178281 | 178291 | 11 | Chondrus crispus plastid complete genome |
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| 69 | NC_021109 | CTA | 4 | 145536 | 145547 | 12 | Pleodorina starrii plastid |
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| 70 | NC_021109 | CTA | 4 | 155042 | 155053 | 12 | Pleodorina starrii plastid |
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| 71 | NC_021189 | CTA | 4 | 95524 | 95535 | 12 | Pyropia haitanensis voucher PH-38 chloroplast |
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| 72 | NC_021189 | CTA | 4 | 101762 | 101772 | 11 | Pyropia haitanensis voucher PH-38 chloroplast |
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| 73 | NC_021372 | CTA | 4 | 20980 | 20991 | 12 | Pharus latifolius chloroplast |
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| 74 | NC_021425 | CTA | 4 | 15455 | 15465 | 11 | Tetracentron sinense chloroplast |
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| 75 | NC_021425 | CTA | 4 | 68526 | 68537 | 12 | Tetracentron sinense chloroplast |
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| 76 | NC_021426 | CTA | 4 | 16326 | 16336 | 11 | Trochodendron aralioides chloroplast |
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| 77 | NC_021426 | CTA | 4 | 69434 | 69445 | 12 | Trochodendron aralioides chloroplast |
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| 78 | NC_021429 | CTA | 4 | 51879 | 51890 | 12 | Cymbidium aloifolium voucher KUN:YJB100604 chloroplast |
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| 79 | NC_021429 | CTA | 4 | 65183 | 65194 | 12 | Cymbidium aloifolium voucher KUN:YJB100604 chloroplast |
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| 80 | NC_021430 | CTA | 4 | 51797 | 51808 | 12 | Cymbidium sinense voucher KUN:YJB100605 chloroplast |
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| 81 | NC_021431 | CTA | 4 | 51900 | 51911 | 12 | Cymbidium tortisepalum voucher KUN:HJL091027 chloroplast |
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| 82 | NC_021432 | CTA | 4 | 51524 | 51535 | 12 | Cymbidium tracyanum voucher KUN:YJB100606 chloroplast |
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| 83 | NC_021432 | CTA | 4 | 64693 | 64704 | 12 | Cymbidium tracyanum voucher KUN:YJB100606 chloroplast |
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| 84 | NC_021433 | CTA | 4 | 51679 | 51690 | 12 | Cymbidium mannii voucher KUN:YJB100602 chloroplast |
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| 85 | NC_021433 | CTA | 4 | 64888 | 64899 | 12 | Cymbidium mannii voucher KUN:YJB100602 chloroplast |
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| 86 | NC_021437 | CTA | 4 | 50547 | 50557 | 11 | Cunninghamia lanceolata chloroplast |
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| 87 | NC_021439 | CTA | 4 | 6271 | 6281 | 11 | Pinus massoniana chloroplast |
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| 88 | NC_021440 | CTA | 4 | 7105 | 7115 | 11 | Pinus taeda chloroplast |
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| 89 | NC_021449 | CTA | 4 | 142064 | 142074 | 11 | Utricularia gibba chloroplast |
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| 90 | NC_021618 | CTA | 4 | 51664 | 51674 | 11 | Grateloupia taiwanensis plastid |
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| 91 | NC_021760 | CTA | 4 | 39873 | 39884 | 12 | Triticum monococcum chloroplast |
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| 92 | NC_021761 | CTA | 4 | 39939 | 39950 | 12 | Secale cereale chloroplast |
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| 93 | NC_021762 | CTA | 4 | 39851 | 39862 | 12 | Triticum urartu chloroplast |
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| 94 | NC_022133 | CTA | 4 | 39767 | 39778 | 12 | Aegilops tauschii chloroplast |
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| 95 | NC_022135 | CTA | 4 | 39916 | 39927 | 12 | Aegilops speltoides isolate SPE0661 chloroplast |
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| 96 | NC_000925 | CTA | 4 | 1783 | 1793 | 11 | Porphyra purpurea chloroplast |
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| 97 | NC_000925 | CTA | 4 | 32616 | 32627 | 12 | Porphyra purpurea chloroplast |
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| 98 | NC_000925 | CTA | 4 | 81770 | 81780 | 11 | Porphyra purpurea chloroplast |
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| 99 | NC_000925 | CTA | 4 | 101274 | 101284 | 11 | Porphyra purpurea chloroplast |
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| 100 | NC_000925 | CTA | 4 | 108457 | 108468 | 12 | Porphyra purpurea chloroplast |
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| 101 | NC_001320 | CTA | 4 | 18751 | 18762 | 12 | Oryza sativa Japonica Group plastid |
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| 102 | NC_001603 | CTA | 4 | 97898 | 97908 | 11 | Euglena gracilis chloroplast |
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| 103 | NC_001631 | CTA | 4 | 6219 | 6229 | 11 | Pinus thunbergii chloroplast |
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| 104 | NC_001666 | CTA | 4 | 21013 | 21024 | 12 | Zea mays chloroplast |
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| 105 | NC_001840 | CTA | 4 | 113321 | 113331 | 11 | Cyanidium caldarium chloroplast |
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| 106 | NC_002186 | CTA | 4 | 30320 | 30331 | 12 | Mesostigma viride chloroplast |
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| 107 | NC_002762 | CTA | 4 | 40171 | 40182 | 12 | Triticum aestivum chloroplast |
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| 108 | NC_003386 | CTA | 4 | 98914 | 98926 | 13 | Psilotum nudum chloroplast |
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| 109 | NC_004543 | CTA | 4 | 21837 | 21848 | 12 | Anthoceros formosae chloroplast |
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| 110 | NC_004543 | CTA | 4 | 57617 | 57628 | 12 | Anthoceros formosae chloroplast |
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| 111 | NC_004677 | CTA | 4 | 6024 | 6034 | 11 | Pinus koraiensis chloroplast |
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| 112 | NC_005086 | CTA | 4 | 45367 | 45378 | 12 | Amborella trichopoda chloroplast |
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| 113 | NC_005087 | CTA | 4 | 58674 | 58684 | 11 | Physcomitrella patens subsp. patens chloroplast |
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| 114 | NC_005878 | CTA | 4 | 83093 | 83104 | 12 | Saccharum hybrid cultivar SP-80-3280 chloroplast |
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| 115 | NC_005973 | CTA | 4 | 18685 | 18696 | 12 | Oryza nivara chloroplast |
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| 116 | NC_006084 | CTA | 4 | 21466 | 21477 | 12 | Saccharum hybrid cultivar NCo 310 chloroplast |
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| 117 | NC_006861 | CTA | 4 | 7957 | 7968 | 12 | Huperzia lucidula chloroplast |
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| 118 | NC_007499 | CTA | 4 | 51940 | 51951 | 12 | Phalaenopsis aphrodite subsp. formosana chloroplast |
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| 119 | NC_007932 | CTA | 4 | 1797 | 1807 | 11 | Porphyra yezoensis chloroplast |
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| 120 | NC_007932 | CTA | 4 | 101852 | 101862 | 11 | Porphyra yezoensis chloroplast |
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| 121 | NC_007957 | CTA | 4 | 122416 | 122427 | 12 | Vitis vinifera chloroplast |
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| 122 | NC_008099 | CTA | 4 | 75688 | 75699 | 12 | Oltmannsiellopsis viridis chloroplast |
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| 123 | NC_008116 | CTA | 4 | 95636 | 95647 | 12 | Staurastrum punctulatum chloroplast |
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| 124 | NC_008117 | CTA | 4 | 15041 | 15052 | 12 | Zygnema circumcarinatum chloroplast |
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| 125 | NC_008155 | CTA | 4 | 18711 | 18722 | 12 | Oryza sativa Indica Group chloroplast |
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| 126 | NC_008235 | CTA | 4 | 7677 | 7688 | 12 | Populus alba chloroplast |
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| 127 | NC_008289 | CTA | 4 | 2493 | 2504 | 12 | Ostreococcus tauri chloroplast |
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| 128 | NC_008334 | CTA | 4 | 148741 | 148751 | 11 | Citrus sinensis chloroplast |
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| 129 | NC_008335 | CTA | 4 | 44587 | 44598 | 12 | Platanus occidentalis chloroplast |
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| 130 | NC_008335 | CTA | 4 | 71505 | 71516 | 12 | Platanus occidentalis chloroplast |
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| 131 | NC_008336 | CTA | 4 | 66760 | 66771 | 12 | Nandina domestica chloroplast |
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| 132 | NC_008588 | CTA | 4 | 14560 | 14570 | 11 | Phaeodactylum tricornutum chloroplast |
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| 133 | NC_008590 | CTA | 4 | 40335 | 40346 | 12 | Hordeum vulgare subsp. vulgare chloroplast |
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| 134 | NC_008602 | CTA | 4 | 21808 | 21819 | 12 | Sorghum bicolor chloroplast |
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| 135 | NC_008822 | CTA | 4 | 3440 | 3451 | 12 | Chlorokybus atmophyticus chloroplast |
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| 136 | NC_008829 | CTA | 4 | 14907 | 14917 | 11 | Angiopteris evecta chloroplast |
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| 137 | NC_009143 | CTA | 4 | 7754 | 7765 | 12 | Populus trichocarpa chloroplast |
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| 138 | NC_009269 | CTA | 4 | 31247 | 31259 | 13 | Barbarea verna chloroplast |
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| 139 | NC_009275 | CTA | 4 | 50462 | 50473 | 12 | Nasturtium officinale chloroplast |
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| 140 | NC_009599 | CTA | 4 | 42959 | 42970 | 12 | Buxus microphylla chloroplast |
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| 141 | NC_009600 | CTA | 4 | 43280 | 43291 | 12 | Illicium oligandrum chloroplast |
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| 142 | NC_009601 | CTA | 4 | 39896 | 39907 | 12 | Dioscorea elephantipes chloroplast |
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| 143 | NC_009601 | CTA | 4 | 110010 | 110021 | 12 | Dioscorea elephantipes chloroplast |
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| 144 | NC_009618 | CTA | 4 | 7529 | 7539 | 11 | Cycas taitungensis chloroplast |
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| 145 | NC_009681 | CTA | 4 | 9012 | 9023 | 12 | Leptosira terrestris chloroplast |
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| 146 | NC_009765 | CTA | 4 | 76944 | 76954 | 11 | Cuscuta gronovii chloroplast |
|---|
| 147 | NC_009808 | CTA | 4 | 29095 | 29106 | 12 | Ipomoea purpurea chloroplast |
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| 148 | NC_009949 | CTA | 4 | 75729 | 75739 | 11 | Cuscuta obtusiflora chloroplast |
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| 149 | NC_009962 | CTA | 4 | 2574 | 2585 | 12 | Ceratophyllum demersum chloroplast |
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| 150 | NC_010109 | CTA | 4 | 43402 | 43413 | 12 | Lemna minor chloroplast |
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| 151 | NC_010433 | CTA | 4 | 79 | 89 | 11 | Manihot esculenta chloroplast |
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| 152 | NC_011152 | CTA | 4 | 6306 | 6316 | 11 | Picea sitchensis chloroplast |
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| 153 | NC_011153 | CTA | 4 | 6308 | 6318 | 11 | Pinus contorta chloroplast |
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| 154 | NC_011154 | CTA | 4 | 6128 | 6138 | 11 | Pinus gerardiana chloroplast |
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| 155 | NC_011154 | CTA | 4 | 38037 | 38048 | 12 | Pinus gerardiana chloroplast |
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| 156 | NC_011155 | CTA | 4 | 6115 | 6125 | 11 | Pinus krempfii chloroplast |
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| 157 | NC_011156 | CTA | 4 | 6110 | 6120 | 11 | Pinus lambertiana chloroplast |
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| 158 | NC_011158 | CTA | 4 | 6069 | 6079 | 11 | Pinus monophylla chloroplast |
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| 159 | NC_011159 | CTA | 4 | 6126 | 6136 | 11 | Pinus nelsonii chloroplast |
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| 160 | NC_011930 | CTA | 4 | 46980 | 46990 | 11 | Keteleeria davidiana chloroplast |
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| 161 | NC_012052 | CTA | 4 | 58780 | 58790 | 11 | Syntrichia ruralis chloroplast |
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| 162 | NC_012097 | CTA | 4 | 23287 | 23298 | 12 | Pycnococcus provasolii chloroplast |
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| 163 | NC_012099 | CTA | 4 | 24905 | 24915 | 11 | Pyramimonas parkeae chloroplast |
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| 164 | NC_012101 | CTA | 4 | 14366 | 14377 | 12 | Monomastix sp. OKE-1 chloroplast |
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| 165 | NC_012615 | CTA | 4 | 42811 | 42822 | 12 | Megaleranthis saniculifolia chloroplast |
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| 166 | NC_012615 | CTA | 4 | 135113 | 135123 | 11 | Megaleranthis saniculifolia chloroplast |
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| 167 | NC_012818 | CTA | 4 | 62043 | 62054 | 12 | Alsophila spinulosa chloroplast |
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| 168 | NC_012903 | CTA | 4 | 53175 | 53186 | 12 | Aureoumbra lagunensis chloroplast |
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| 169 | NC_012927 | CTA | 4 | 20728 | 20739 | 12 | Bambusa oldhamii chloroplast |
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| 170 | NC_013088 | CTA | 4 | 20891 | 20902 | 12 | Dendrocalamus latiflorus chloroplast |
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| 171 | NC_013273 | CTA | 4 | 21375 | 21386 | 12 | Coix lacryma-jobi chloroplast |
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| 172 | NC_013553 | CTA | 4 | 9121 | 9132 | 12 | Parthenium argentatum chloroplast |
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| 173 | NC_013703 | CTA | 4 | 3514 | 3525 | 12 | Cryptomonas paramecium plastid |
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| 174 | NC_013991 | CTA | 4 | 51819 | 51829 | 11 | Phoenix dactylifera chloroplast |
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| 175 | NC_014057 | CTA | 4 | 54542 | 54552 | 11 | Pisum sativum chloroplast |
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| 176 | NC_014062 | CTA | 4 | 41834 | 41845 | 12 | Anomochloa marantoidea chloroplast |
|---|
| 177 | NC_014063 | CTA | 4 | 60876 | 60886 | 11 | Lathyrus sativus chloroplast |
|---|
| 178 | NC_014063 | CTA | 4 | 88066 | 88076 | 11 | Lathyrus sativus chloroplast |
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