ChloroMitoSSRDB 2.0 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

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Chloroplast Motifs - Imperfect ATTC Repeats

S.NoSequence IDMotifIterationsStartEndTract LengthSequence Name
1NC_014589ATTC4762917630515Cathaya argyrophylla chloroplast
2NC_016727ATTC412303712305115Silene vulgaris chloroplast
3NC_016730ATTC412319512320915Silene latifolia chloroplast
4NC_021433ATTC413047813049215Cymbidium mannii voucher KUN:YJB100602 chloroplast
5NC_007499ATTC412364312365715 Phalaenopsis aphrodite subsp. formosana chloroplast
6NC_011087ATTC384162484163411Paulinella chromatophora chromatophore
7NC_011087ATTC384199884200912Paulinella chromatophora chromatophore
8NC_014267ATTC3907109072011Kryptoperidinium foliaceum chloroplast
9NC_014287ATTC3963569636611Durinskia baltica chloroplast
10NC_014346ATTC342200842201811Floydiella terrestris chloroplast
11NC_014570ATTC3151151512511Eucalyptus grandis chloroplast
12NC_014570ATTC3336923370211Eucalyptus grandis chloroplast
13NC_014575ATTC32195220612Cedrus deodara chloroplast
14NC_014582ATTC3578555786511Monsonia speciosa plastid
15NC_014582ATTC3717407175011Monsonia speciosa plastid
16NC_014675ATTC36281629111Isoetes flaccida chloroplast
17NC_014675ATTC3616946170613Isoetes flaccida chloroplast
18NC_014675ATTC3686546866411Isoetes flaccida chloroplast
19NC_014697ATTC35769577911Prunus persica chloroplast
20NC_014807ATTC36290630011Corynocarpus laevigata chloroplast
21NC_015113ATTC312405512406511Anthriscus cerefolium chloroplast
22NC_015113ATTC312568412569512Anthriscus cerefolium chloroplast
23NC_015139ATTC35470548011Brassica rapa subsp. pekinensis chloroplast
24NC_015206ATTC35594560411Fragaria vesca subsp. vesca chloroplast
25NC_015206ATTC3230952310713Fragaria vesca subsp. vesca chloroplast
26NC_015308ATTC35948595811Hevea brasiliensis chloroplast
27NC_015403ATTC3697956980511Fistulifera sp. JPCC DA0580 chloroplast
28NC_015543ATTC3166211663111Jacobaea vulgaris chloroplast
29NC_015605ATTC3344983450811Nelumbo lutea chloroplast
30NC_015605ATTC313435113436212Nelumbo lutea chloroplast
31NC_015610ATTC3346313464111Nelumbo nucifera chloroplast
32NC_015610ATTC313444013445112Nelumbo nucifera chloroplast
33NC_015803ATTC3619756198511Indocalamus longiauritus plastid
34NC_015803ATTC311807911808911Indocalamus longiauritus plastid
35NC_015817ATTC3619286193811Phyllostachys edulis chloroplast
36NC_015817ATTC311808411809411Phyllostachys edulis chloroplast
37NC_015820ATTC3619816199111Acidosasa purpurea chloroplast
38NC_015820ATTC311810511811511Acidosasa purpurea chloroplast
39NC_015826ATTC3619376194711Phyllostachys nigra var. henonis chloroplast
40NC_015826ATTC311817911818911Phyllostachys nigra var. henonis chloroplast
41NC_015830ATTC3616946170411Bambusa emeiensis chloroplast
42NC_015830ATTC311790411791411Bambusa emeiensis chloroplast
43NC_015831ATTC3616566166611Ferrocalamus rimosivaginus plastid
44NC_015831ATTC311784111785111Ferrocalamus rimosivaginus plastid
45NC_015894ATTC3760917610212Wolffiella lingulata chloroplast
46NC_015899ATTC3756007561112Wolffia australiana chloroplast
47NC_015983ATTC35513552311Cucumis melo subsp. melo chloroplast
48NC_015996ATTC3247782479013Pyrus pyrifolia chloroplast
49NC_015996ATTC3394973950711Pyrus pyrifolia chloroplast
50NC_016058ATTC3219682197912Larix decidua chloroplast
51NC_016063ATTC3763057631612Cephalotaxus wilsoniana chloroplast DNA
52NC_016063ATTC3933799338911Cephalotaxus wilsoniana chloroplast DNA
53NC_016064ATTC3540815409212Pseudotsuga sinensis var. wilsoniana chloroplast
54NC_016433ATTC3468794689113Sesamum indicum chloroplast
55NC_016677ATTC3608466085611Leersia tisserantii plastid
56NC_016677ATTC311586311587311Leersia tisserantii plastid
57NC_016699ATTC3619326194211Phyllostachys propinqua chloroplast
58NC_016699ATTC311810711811711Phyllostachys propinqua chloroplast
59NC_016708ATTC3706197063012Millettia pinnata chloroplast
60NC_016708ATTC3716487165912Millettia pinnata chloroplast
61NC_016718ATTC3607716078111Rhynchoryza subulata plastid
62NC_016718ATTC311566011567011Rhynchoryza subulata plastid
63NC_016728ATTC311457511458612Silene noctiflora chloroplast
64NC_016728ATTC312946012947011Silene noctiflora chloroplast
65NC_016734ATTC35461547111Brassica napus chloroplast
66NC_016736ATTC31882189211Ricinus communis chloroplast
67NC_016736ATTC35851586111Ricinus communis chloroplast
68NC_016753ATTC312986112987111Colocasia esculenta chloroplast
69NC_016921ATTC35847585711Pentactina rupicola chloroplast
70NC_016927ATTC3594955950511Oryza meridionalis chloroplast
71NC_016927ATTC311393411394411Oryza meridionalis chloroplast
72NC_016986ATTC3528085281912Ginkgo biloba chloroplast
73NC_016986ATTC3777377774812Ginkgo biloba chloroplast
74NC_017006ATTC3812008121112Mankyua chejuensis chloroplast
75NC_017006ATTC3926569266712Mankyua chejuensis chloroplast
76NC_017006ATTC3950749508512Mankyua chejuensis chloroplast
77NC_017006ATTC310578210579211Mankyua chejuensis chloroplast
78NC_017602ATTC312501012502011Elaeis guineensis chloroplast
79NC_017609ATTC3743727438312Phalaenopsis equestris chloroplast
80NC_017835ATTC3594825949211Oryza rufipogon chloroplast
81NC_017835ATTC311392211393211Oryza rufipogon chloroplast
82NC_018051ATTC3451534516311Vigna unguiculata chloroplast
83NC_018109ATTC315216211Gossypium incanum chloroplast
84NC_018110ATTC315216211Gossypium somalense chloroplast
85NC_018112ATTC315216211Gossypium areysianum chloroplast
86NC_018114ATTC310729610730611Erycina pusilla chloroplast
87NC_018766ATTC35563557311Fragaria vesca subsp. bracteata chloroplast
88NC_018766ATTC3230982311013Fragaria vesca subsp. bracteata chloroplast
89NC_018767ATTC35564557411Fragaria mandshurica plastid
90NC_018767ATTC3231112312313Fragaria mandshurica plastid
91NC_019601ATTC35593560311Fragaria chiloensis chloroplast
92NC_019601ATTC3230842309613Fragaria chiloensis chloroplast
93NC_019602ATTC35593560311Fragaria virginiana chloroplast
94NC_019602ATTC3230832309513Fragaria virginiana chloroplast
95NC_019616ATTC312536112537111Vaccinium macrocarpon plastid
96NC_019628ATTC311989411990411Pellia endiviifolia chloroplast
97NC_019648ATTC3591115912111Festuca altissima plastid
98NC_019648ATTC311403811404811Festuca altissima plastid
99NC_019649ATTC3576655767511Festuca ovina plastid
100NC_019649ATTC3892788928912Festuca ovina plastid
101NC_019649ATTC311212911213911Festuca ovina plastid
102NC_019650ATTC3591525916211Festuca pratensis plastid
103NC_019650ATTC311404911405911Festuca pratensis plastid
104NC_019651ATTC3590925910211Lolium multiflorum plastid
105NC_019651ATTC311393511394511Lolium multiflorum plastid
106NC_020092ATTC3168121682211Chrysanthemum x morifolium chloroplast
107NC_020092ATTC3702097022012Chrysanthemum x morifolium chloroplast
108NC_020098ATTC3472754728713Tectona grandis chloroplast
109NC_020147ATTC3317283173912Ophioglossum californicum chloroplast
110NC_020316ATTC311951411952512Magnolia officinalis chloroplast
111NC_020320ATTC3168171682711Chrysanthemum indicum voucher HeN001 chloroplast
112NC_020320ATTC3701687017912Chrysanthemum indicum voucher HeN001 chloroplast
113NC_020341ATTC3619096191911Arundinaria gigantea chloroplast
114NC_020341ATTC311734011735011Arundinaria gigantea chloroplast
115NC_020361ATTC3499044991512Podocarpus totara chloroplast
116NC_020361ATTC313179013180112Podocarpus totara chloroplast
117NC_020362ATTC313025313026311Heliconia collinsiana plastid
118NC_020364ATTC312564212565211Pseudophoenix vinifera plastid
119NC_020366ATTC312608412609411Bismarckia nobilis plastid
120NC_020431ATTC3456294564113Salvia miltiorrhiza chloroplast
121NC_020607ATTC3168111682111Artemisia frigida chloroplast
122NC_020607ATTC3701627017312Artemisia frigida chloroplast
123NC_020795ATTC3876348764411Chondrus crispus plastid complete genome
124NC_021075ATTC3840108402011Calliarthron tuberculosum chloroplast
125NC_021091ATTC3452284523811Vigna angularis chloroplast DNA
126NC_021101ATTC311099011100112Francoa sonchifolia plastid
127NC_021109ATTC3624226243413Pleodorina starrii plastid
128NC_021109ATTC314961414962512Pleodorina starrii plastid
129NC_021110ATTC3757827579312Cephalotaxus oliveri chloroplast
130NC_021110ATTC3923139232311Cephalotaxus oliveri chloroplast
131NC_021111ATTC3295702958011Cistanche deserticola chloroplast
132NC_021111ATTC3462044621613Cistanche deserticola chloroplast
133NC_021121ATTC313183113184212Ardisia polysticta chloroplast
134NC_021372ATTC3625526256211Pharus latifolius chloroplast
135NC_021372ATTC3626596266911Pharus latifolius chloroplast
136NC_021372ATTC311928511929511Pharus latifolius chloroplast
137NC_021425ATTC316265716266812Tetracentron sinense chloroplast
138NC_021426ATTC316401716402812Trochodendron aralioides chloroplast
139NC_021429ATTC311081911082911Cymbidium aloifolium voucher KUN:YJB100604 chloroplast
140NC_021430ATTC311010111011111Cymbidium sinense voucher KUN:YJB100605 chloroplast
141NC_021431ATTC311014911015911Cymbidium tortisepalum voucher KUN:HJL091027 chloroplast
142NC_021432ATTC311016911017911Cymbidium tracyanum voucher KUN:YJB100606 chloroplast
143NC_021437ATTC3351823519312Cunninghamia lanceolata chloroplast
144NC_021437ATTC3647856479612Cunninghamia lanceolata chloroplast
145NC_021438ATTC310865510866511Gnetum montanum chloroplast
146NC_021439ATTC38609862012Pinus massoniana chloroplast
147NC_021439ATTC3527835279412Pinus massoniana chloroplast
148NC_021440ATTC39432944312Pinus taeda chloroplast
149NC_021440ATTC3535075351812Pinus taeda chloroplast
150NC_021441ATTC3760067601712Taiwania flousiana chloroplast
151NC_021455ATTC35782579211Prinsepia utilis plastid
152NC_021618ATTC313572813573811Grateloupia taiwanensis plastid
153NC_021636ATTC3711147112512Glycine tomentella voucher CSIRO:G1403 chloroplast
154NC_021646ATTC3712307124112Glycine stenophita voucher CSIRO:G1974 chloroplast
155NC_021647ATTC3709247093512Glycine canescens voucher CSIRO:G1232 chloroplast
156NC_021648ATTC3711567116712Glycine dolichocarpa voucher CSIRO:G1134 chloroplast
157NC_021649ATTC3713277133812Glycine falcata voucher CSIRO:G1718 chloroplast
158NC_021650ATTC3711717118212Glycine syndetika voucher CSIRO:G1300 chloroplast
159NC_021936ATTC3591385914912Najas flexilis chloroplast
160NC_022099ATTC3722567226611Medicago truncatula cultivar Jemalong 2HA plastid
161NC_022100ATTC3720897209911Medicago truncatula cultivar Borung plastid
162NC_022136ATTC311772811774013Lygodium japonicum chloroplast
163NC_000927ATTC3989569896611 Nephroselmis olivacea chloroplast
164NC_001320ATTC3594825949211 Oryza sativa Japonica Group plastid
165NC_001320ATTC311390511391511 Oryza sativa Japonica Group plastid
166NC_001631ATTC3528445285512 Pinus thunbergii chloroplast
167NC_001666ATTC3613676137711 Zea mays chloroplast
168NC_002186ATTC310166610167712 Mesostigma viride chloroplast
169NC_002694ATTC3385103852011 Lotus japonicus chloroplast
170NC_002762ATTC311406511407511 Triticum aestivum chloroplast
171NC_003119ATTC3722567226611 Medicago truncatula chloroplast
172NC_003386ATTC3770357704511 Psilotum nudum chloroplast
173NC_003386ATTC311398311399311 Psilotum nudum chloroplast
174NC_004115ATTC3736377364711 Chaetosphaeridium globosum chloroplast
175NC_004543ATTC3915279153812 Anthoceros formosae chloroplast
176NC_004677ATTC3516185162912 Pinus koraiensis chloroplast
177NC_005086ATTC3748607487112 Amborella trichopoda chloroplast
178NC_005878ATTC312366012367011 Saccharum hybrid cultivar SP-80-3280 chloroplast
179NC_005973ATTC3594125942211 Oryza nivara chloroplast
180NC_005973ATTC311387111388111 Oryza nivara chloroplast
181NC_006084ATTC3620336204311 Saccharum hybrid cultivar NCo 310 chloroplast
182NC_006861ATTC312772312773412 Huperzia lucidula chloroplast
183NC_007144ATTC35623563311 Cucumis sativus chloroplast
184NC_007407ATTC3141271413812 Acorus calamus plastid
185NC_007407ATTC3682166822712 Acorus calamus plastid
186NC_007407ATTC311404611405712 Acorus calamus plastid
187NC_007499ATTC3490684907811 Phalaenopsis aphrodite subsp. formosana chloroplast
188NC_007499ATTC3743607437112 Phalaenopsis aphrodite subsp. formosana chloroplast
189NC_007578ATTC3171061711611 Lactuca sativa chloroplast
190NC_007932ATTC33705371511 Porphyra yezoensis chloroplast
191NC_007942ATTC3704247043512 Glycine max chloroplast
192NC_007977ATTC3171561716611 Helianthus annuus chloroplast
193NC_008097ATTC3811798119113 Chara vulgaris chloroplast
194NC_008097ATTC311907411908411 Chara vulgaris chloroplast
195NC_008097ATTC312382912383911 Chara vulgaris chloroplast
196NC_008100ATTC3156991570911 Helicosporidium sp. ex Simulium jonesii plastid
197NC_008115ATTC3152131522311 Eucalyptus globulus subsp. globulus chloroplast
198NC_008115ATTC3337903380011 Eucalyptus globulus subsp. globulus chloroplast
199NC_008117ATTC3214552146713 Zygnema circumcarinatum chloroplast
200NC_008155ATTC3594335944311 Oryza sativa Indica Group chloroplast
201NC_008155ATTC311387711388711 Oryza sativa Indica Group chloroplast
202NC_008235ATTC3834128342312 Populus alba chloroplast
203NC_008325ATTC312592812593912 Daucus carota chloroplast
204NC_008326ATTC312836912837911 Liriodendron tulipifera chloroplast
205NC_008335ATTC3344533446311 Platanus occidentalis chloroplast
206NC_008336ATTC312510712511711 Nandina domestica chloroplast
207NC_008359ATTC34695470612 Morus indica chloroplast
208NC_008359ATTC3684086841811 Morus indica chloroplast
209NC_008407ATTC312038812039912 Jasminum nudiflorum chloroplast
210NC_008454ATTC3405112 Pelargonium x hortorum chloroplast
211NC_008454ATTC3223192233012 Pelargonium x hortorum chloroplast
212NC_008454ATTC3494454945612 Pelargonium x hortorum chloroplast
213NC_008456ATTC312861312862311 Drimys granadensis chloroplast
214NC_008456ATTC313278813279811 Drimys granadensis chloroplast
215NC_008457ATTC3571505716011 Piper cenocladum chloroplast
216NC_008588ATTC3881478815812 Phaeodactylum tricornutum chloroplast
217NC_008590ATTC311564911565911 Hordeum vulgare subsp. vulgare chloroplast
218NC_008591ATTC3600696007911 Agrostis stolonifera chloroplast
219NC_008591ATTC311565811566811 Agrostis stolonifera chloroplast
220NC_008602ATTC3621916220111 Sorghum bicolor chloroplast
221NC_008829ATTC3128201283213 Angiopteris evecta chloroplast
222NC_008829ATTC3205492055911 Angiopteris evecta chloroplast
223NC_008829ATTC3764877649812 Angiopteris evecta chloroplast
224NC_009143ATTC3110751108511 Populus trichocarpa chloroplast
225NC_009259ATTC3445934460311 Phaseolus vulgaris chloroplast
226NC_009259ATTC3478894790113 Phaseolus vulgaris chloroplast
227NC_009269ATTC35600561011 Barbarea verna chloroplast
228NC_009270ATTC35561557111 Capsella bursa-pastoris chloroplast
229NC_009271ATTC35492550211 Crucihimalaya wallichii chloroplast
230NC_009273ATTC3312093122113 Lepidium virginicum chloroplast
231NC_009275ATTC35627563711 Nasturtium officinale chloroplast
232NC_009598ATTC312003512004511 Chloranthus spicatus chloroplast
233NC_009599ATTC35620563011 Buxus microphylla chloroplast
234NC_009599ATTC3333403335011 Buxus microphylla chloroplast
235NC_009601ATTC3643046431512 Dioscorea elephantipes chloroplast
236NC_009601ATTC3675166752712 Dioscorea elephantipes chloroplast
237NC_009766ATTC3673456735713 Cuscuta reflexa chloroplast
238NC_009766ATTC3727007271011 Cuscuta reflexa chloroplast
239NC_009808ATTC3614876149711 Ipomoea purpurea chloroplast
240NC_009808ATTC3900719008212 Ipomoea purpurea chloroplast
241NC_009808ATTC312401212402413 Ipomoea purpurea chloroplast
242NC_009950ATTC3591755918511 Lolium perenne chloroplast
243NC_009950ATTC311401811402811 Lolium perenne chloroplast
244NC_009962ATTC3143421435211 Ceratophyllum demersum chloroplast
245NC_010093ATTC3138031381412 Acorus americanus chloroplast
246NC_010093ATTC3678926790312 Acorus americanus chloroplast
247NC_010093ATTC311371811372912 Acorus americanus chloroplast
248NC_010433ATTC35748575811 Manihot esculenta chloroplast
249NC_010442ATTC3790757908511 Trachelium caeruleum chloroplast
250NC_010442ATTC312401212402211 Trachelium caeruleum chloroplast
251NC_010548ATTC34433444412 Cryptomeria japonica chloroplast
252NC_010601ATTC3169581696811 Guizotia abyssinica chloroplast
253NC_010776ATTC35576558611 Fagopyrum esculentum subsp. ancestrale chloroplast
254NC_011032ATTC3583975840711 Brachypodium distachyon chloroplast
255NC_011152ATTC3531225313312 Picea sitchensis chloroplast
256NC_011153ATTC38635864612 Pinus contorta chloroplast
257NC_011153ATTC3529495296012 Pinus contorta chloroplast
258NC_011154ATTC3523365234712 Pinus gerardiana chloroplast
259NC_011155ATTC3522555226612 Pinus krempfii chloroplast
260NC_011156ATTC3517635177412 Pinus lambertiana chloroplast
261NC_011158ATTC3519375194812 Pinus monophylla chloroplast
262NC_011159ATTC3521375214812 Pinus nelsonii chloroplast
263NC_011163ATTC3380743808411 Cicer arietinum chloroplast
264NC_011163ATTC310919110920111 Cicer arietinum chloroplast
265NC_011713ATTC3597165972611 Festuca arundinacea chloroplast
266NC_011713ATTC311465511466511 Festuca arundinacea chloroplast
267NC_011930ATTC3922149222512 Keteleeria davidiana chloroplast
268NC_011942ATTC3510555106511 Gnetum parvifolium chloroplast
269NC_012099ATTC34911492212 Pyramimonas parkeae chloroplast
270NC_012099ATTC3361533616412 Pyramimonas parkeae chloroplast
271NC_012615ATTC3330813309111 Megaleranthis saniculifolia chloroplast
272NC_012615ATTC312824912825911 Megaleranthis saniculifolia chloroplast
273NC_012903ATTC3405404055011 Aureoumbra lagunensis chloroplast
274NC_012927ATTC3615886159811 Bambusa oldhamii chloroplast
275NC_012927ATTC311777311778311 Bambusa oldhamii chloroplast
276NC_012978ATTC3316243163512 Parachlorella kessleri chloroplast
277NC_013086ATTC311021711022711 Selaginella moellendorffii plastid
278NC_013086ATTC311180111181313 Selaginella moellendorffii plastid
279NC_013086ATTC311278411279411 Selaginella moellendorffii plastid
280NC_013086ATTC312376812378013 Selaginella moellendorffii plastid
281NC_013088ATTC3616956170511 Dendrocalamus latiflorus chloroplast
282NC_013088ATTC311785211786211 Dendrocalamus latiflorus chloroplast
283NC_013273ATTC3617556176511 Coix lacryma-jobi chloroplast
284NC_013553ATTC3169851699511 Parthenium argentatum chloroplast
285NC_013843ATTC3451774518711 Vigna radiata chloroplast
286NC_013991ATTC312615312616311 Phoenix dactylifera chloroplast
287NC_014056ATTC310743810744811 Oncidium Gower Ramsey chloroplast
288NC_014062ATTC3613146132411 Anomochloa marantoidea chloroplast
289NC_014062ATTC311661911662911 Anomochloa marantoidea chloroplast
290NC_014063ATTC3520845209411 Lathyrus sativus chloroplast
291NC_014063ATTC3997349974512 Lathyrus sativus chloroplast