ChloroMitoSSRDB 2.0 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

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Chloroplast Motifs - Imperfect AAGT Repeats

S.NoSequence IDMotifIterationsStartEndTract LengthSequence Name
1NC_011087AAGT366987966989012Paulinella chromatophora chromatophore
2NC_014569AAGT3512705128011Erodium texanum plastid
3NC_014575AAGT3792297924012Cedrus deodara chloroplast
4NC_014575AAGT3908229083211Cedrus deodara chloroplast
5NC_014592AAGT310531310532311Cheilanthes lindheimeri chloroplast
6NC_014674AAGT31202121211Castanea mollissima chloroplast
7NC_014674AAGT313249913251113Castanea mollissima chloroplast
8NC_014676AAGT31250126011Theobroma cacao chloroplast
9NC_014697AAGT31044105411Prunus persica chloroplast
10NC_014697AAGT312872812874013Prunus persica chloroplast
11NC_014807AAGT31177118711Corynocarpus laevigata chloroplast
12NC_014808AAGT3561815619111Thalassiosira oceanica CCMP1005 chloroplast
13NC_015204AAGT31144115411Gossypium thurberi chloroplast
14NC_015206AAGT31103111311Fragaria vesca subsp. vesca chloroplast
15NC_015308AAGT31490150011Hevea brasiliensis chloroplast
16NC_015401AAGT31244125411Olea europaea subsp. europaea plastid
17NC_015403AAGT3834128342312Fistulifera sp. JPCC DA0580 chloroplast
18NC_015543AAGT31046105611Jacobaea vulgaris chloroplast
19NC_015543AAGT3741987420811Jacobaea vulgaris chloroplast
20NC_015543AAGT311243311244311Jacobaea vulgaris chloroplast
21NC_015604AAGT31244125411Olea europaea subsp. cuspidata chloroplast
22NC_015608AAGT31242125211Olea woodiana subsp. woodiana chloroplast
23NC_015621AAGT31189119911Ageratina adenophora chloroplast
24NC_015621AAGT3753597536911Ageratina adenophora chloroplast
25NC_015621AAGT311362711363711Ageratina adenophora chloroplast
26NC_015623AAGT31244125411Olea europaea subsp. maroccana chloroplast
27NC_015803AAGT378679611Indocalamus longiauritus plastid
28NC_015817AAGT378679611Phyllostachys edulis chloroplast
29NC_015817AAGT3123341234411Phyllostachys edulis chloroplast
30NC_015820AAGT379880811Acidosasa purpurea chloroplast
31NC_015820AAGT3123391234911Acidosasa purpurea chloroplast
32NC_015826AAGT378679611Phyllostachys nigra var. henonis chloroplast
33NC_015826AAGT3123271233711Phyllostachys nigra var. henonis chloroplast
34NC_015830AAGT379080011Bambusa emeiensis chloroplast
35NC_015831AAGT378679611Ferrocalamus rimosivaginus plastid
36NC_015831AAGT3123331234311Ferrocalamus rimosivaginus plastid
37NC_015891AAGT31414142411Spirodela polyrhiza chloroplast
38NC_015892AAGT31194120411Magnolia kwangsiensis chloroplast
39NC_015894AAGT31017102711Wolffiella lingulata chloroplast
40NC_015899AAGT31079108911Wolffia australiana chloroplast
41NC_015983AAGT397798711Cucumis melo subsp. melo chloroplast
42NC_015983AAGT3378083781811Cucumis melo subsp. melo chloroplast
43NC_015990AAGT378779711Panicum virgatum chloroplast
44NC_015996AAGT31045105511Pyrus pyrifolia chloroplast
45NC_015996AAGT313082313083513Pyrus pyrifolia chloroplast
46NC_016068AAGT31245125511Nicotiana undulata chloroplast
47NC_016433AAGT31079108911Sesamum indicum chloroplast
48NC_016468AAGT397798711Boea hygrometrica chloroplast
49NC_016471AAGT3116111162111Neottia nidus-avis plastid
50NC_016668AAGT31131114111Gossypium raimondii chloroplast
51NC_016670AAGT31138114811Gossypium darwinii chloroplast
52NC_016677AAGT378179111Leersia tisserantii plastid
53NC_016690AAGT31131114111Gossypium tomentosum chloroplast
54NC_016692AAGT31131114111Gossypium herbaceum subsp. africanum chloroplast
55NC_016699AAGT378679611Phyllostachys propinqua chloroplast
56NC_016699AAGT3123291233911Phyllostachys propinqua chloroplast
57NC_016708AAGT31122113211Millettia pinnata chloroplast
58NC_016711AAGT31124113411Gossypium mustelinum chloroplast
59NC_016712AAGT31131114111Gossypium arboreum chloroplast
60NC_016718AAGT378179111Rhynchoryza subulata plastid
61NC_016727AAGT31069107911Silene vulgaris chloroplast
62NC_016727AAGT311090311091311Silene vulgaris chloroplast
63NC_016729AAGT31015102511Silene conica chloroplast
64NC_016730AAGT31019102911Silene latifolia chloroplast
65NC_016731AAGT3967299673911Synedra acus chloroplast
66NC_016736AAGT31340135011Ricinus communis chloroplast
67NC_016921AAGT31094110411Pentactina rupicola chloroplast
68NC_016921AAGT312765512766713Pentactina rupicola chloroplast
69NC_016927AAGT378179111Oryza meridionalis chloroplast
70NC_016986AAGT3742777428711Ginkgo biloba chloroplast
71NC_017602AAGT382383311Elaeis guineensis chloroplast
72NC_017609AAGT3294842949411Phalaenopsis equestris chloroplast
73NC_017835AAGT378179111Oryza rufipogon chloroplast
74NC_017894AAGT31147115711Gossypium gossypioides chloroplast
75NC_018051AAGT33946395611Vigna unguiculata chloroplast
76NC_018109AAGT31121113111Gossypium incanum chloroplast
77NC_018110AAGT31125113511Gossypium somalense chloroplast
78NC_018111AAGT31168117811Gossypium capitis-viridis chloroplast
79NC_018112AAGT31125113511Gossypium areysianum chloroplast
80NC_018113AAGT31251126111Gossypium robinsonii chloroplast
81NC_018114AAGT3284182842811Erycina pusilla chloroplast
82NC_018117AAGT31197120711Datura stramonium chloroplast
83NC_018357AAGT31170118011Magnolia denudata chloroplast
84NC_018523AAGT3590725908312Saccharina japonica chloroplast
85NC_018552AAGT31264127411Capsicum annuum chloroplast
86NC_018766AAGT31069107911Fragaria vesca subsp. bracteata chloroplast
87NC_018767AAGT31069107911Fragaria mandshurica plastid
88NC_019601AAGT31103111311Fragaria chiloensis chloroplast
89NC_019602AAGT31103111311Fragaria virginiana chloroplast
90NC_019616AAGT317591917592911Vaccinium macrocarpon plastid
91NC_019648AAGT378779711Festuca altissima plastid
92NC_019649AAGT378679611Festuca ovina plastid
93NC_019650AAGT378679611Festuca pratensis plastid
94NC_019651AAGT378679611Lolium multiflorum plastid
95NC_020019AAGT31159116911Camellia sinensis chloroplast
96NC_020092AAGT31165117511Chrysanthemum x morifolium chloroplast
97NC_020092AAGT311267511268511Chrysanthemum x morifolium chloroplast
98NC_020098AAGT31143115311Tectona grandis chloroplast
99NC_020152AAGT31238124811Quercus rubra plastid
100NC_020152AAGT313284213285413Quercus rubra plastid
101NC_020316AAGT31175118511Magnolia officinalis chloroplast
102NC_020317AAGT31176118611Magnolia officinalis subsp. biloba voucher SC001 chloroplast
103NC_020318AAGT31182119211Magnolia grandiflora voucher NJ016 chloroplast
104NC_020320AAGT31156116611Chrysanthemum indicum voucher HeN001 chloroplast
105NC_020320AAGT311263511264511Chrysanthemum indicum voucher HeN001 chloroplast
106NC_020341AAGT378679611Arundinaria gigantea chloroplast
107NC_020341AAGT3123221233211Arundinaria gigantea chloroplast
108NC_020361AAGT312441512442511Podocarpus totara chloroplast
109NC_020362AAGT393794711Heliconia collinsiana plastid
110NC_020364AAGT387288211Pseudophoenix vinifera plastid
111NC_020365AAGT383284211Calamus caryotoides plastid
112NC_020366AAGT396597511Bismarckia nobilis plastid
113NC_020367AAGT382483411Dasypogon bromeliifolius plastid
114NC_020438AAGT3799887999811Gonium pectorale chloroplast
115NC_020607AAGT31165117511Artemisia frigida chloroplast
116NC_021091AAGT33998400811Vigna angularis chloroplast DNA
117NC_021101AAGT31136114611Francoa sonchifolia plastid
118NC_021109AAGT3471704718112Pleodorina starrii plastid
119NC_021121AAGT31210122011Ardisia polysticta chloroplast
120NC_021372AAGT379680611Pharus latifolius chloroplast
121NC_021372AAGT310800210801211Pharus latifolius chloroplast
122NC_021423AAGT31181119111Catharanthus roseus cultivar Pacifica Punch Halo chloroplast
123NC_021425AAGT31230124011Tetracentron sinense chloroplast
124NC_021426AAGT31220123011Trochodendron aralioides chloroplast
125NC_021429AAGT3283522836211Cymbidium aloifolium voucher KUN:YJB100604 chloroplast
126NC_021430AAGT3283992840911Cymbidium sinense voucher KUN:YJB100605 chloroplast
127NC_021431AAGT3284832849311Cymbidium tortisepalum voucher KUN:HJL091027 chloroplast
128NC_021432AAGT3280022801211Cymbidium tracyanum voucher KUN:YJB100606 chloroplast
129NC_021433AAGT3282292823911Cymbidium mannii voucher KUN:YJB100602 chloroplast
130NC_021449AAGT31063107311Utricularia gibba chloroplast
131NC_021455AAGT31126113611Prinsepia utilis plastid
132NC_021455AAGT312732712733913Prinsepia utilis plastid
133NC_021636AAGT31013102311Glycine tomentella voucher CSIRO:G1403 chloroplast
134NC_021645AAGT31023103311Glycine cyrtoloba voucher CSIRO:G1267 chloroplast
135NC_021646AAGT31012102211Glycine stenophita voucher CSIRO:G1974 chloroplast
136NC_021647AAGT31013102311Glycine canescens voucher CSIRO:G1232 chloroplast
137NC_021648AAGT31013102311Glycine dolichocarpa voucher CSIRO:G1134 chloroplast
138NC_021649AAGT31013102311Glycine falcata voucher CSIRO:G1718 chloroplast
139NC_021650AAGT31013102311Glycine syndetika voucher CSIRO:G1300 chloroplast
140NC_021760AAGT378179111Triticum monococcum chloroplast
141NC_021761AAGT377478411Secale cereale chloroplast
142NC_021762AAGT378179111Triticum urartu chloroplast
143NC_022133AAGT379080011Aegilops tauschii chloroplast
144NC_022135AAGT379080011Aegilops speltoides isolate SPE0661 chloroplast
145NC_000926AAGT310038510039511 Guillardia theta chloroplast
146NC_000926AAGT310818210819211 Guillardia theta chloroplast
147NC_001320AAGT378179111 Oryza sativa Japonica Group plastid
148NC_001666AAGT378879811 Zea mays chloroplast
149NC_001879AAGT31235124511 Nicotiana tabacum plastid
150NC_002202AAGT391692611 Spinacia oleracea plastid
151NC_002693AAGT31064107411 Oenothera elata subsp. hookeri plastid plastome I
152NC_002694AAGT314143314144311 Lotus japonicus chloroplast
153NC_002762AAGT379080011 Triticum aestivum chloroplast
154NC_004115AAGT310120310121311 Chaetosphaeridium globosum chloroplast
155NC_004561AAGT31193120311 Atropa belladonna chloroplast
156NC_004823AAGT33335334511 Eimeria tenella strain Penn State apicoplast
157NC_004823AAGT33933394412 Eimeria tenella strain Penn State apicoplast
158NC_005087AAGT3539185392811 Physcomitrella patens subsp. patens chloroplast
159NC_005353AAGT317543017544011 Chlamydomonas reinhardtii chloroplast
160NC_005878AAGT3624166242611 Saccharum hybrid cultivar SP-80-3280 chloroplast
161NC_005973AAGT378179111 Oryza nivara chloroplast
162NC_006050AAGT31221123111 Nymphaea alba chloroplast
163NC_006050AAGT315131515132511 Nymphaea alba chloroplast
164NC_006084AAGT379080011 Saccharum hybrid cultivar NCo 310 chloroplast
165NC_006137AAGT315718815719912 Gracilaria tenuistipitata var. liui chloroplast
166NC_006861AAGT312549512550511 Huperzia lucidula chloroplast
167NC_007144AAGT393094011 Cucumis sativus chloroplast
168NC_007144AAGT3377823779211 Cucumis sativus chloroplast
169NC_007407AAGT31163117311 Acorus calamus plastid
170NC_007499AAGT3294022941211 Phalaenopsis aphrodite subsp. formosana chloroplast
171NC_007500AAGT31235124511 Nicotiana sylvestris chloroplast
172NC_007578AAGT31178118811 Lactuca sativa chloroplast
173NC_007578AAGT3754877549711 Lactuca sativa chloroplast
174NC_007602AAGT31207121711 Nicotiana tomentosiformis chloroplast
175NC_007898AAGT31239124911 Solanum lycopersicum chloroplast
176NC_007898AAGT3154621547211 Solanum lycopersicum chloroplast
177NC_007942AAGT31014102411 Glycine max chloroplast
178NC_007943AAGT31216122611 Solanum bulbocastanum chloroplast
179NC_007944AAGT31131114111 Gossypium hirsutum chloroplast
180NC_007957AAGT31111112111 Vitis vinifera chloroplast
181NC_007957AAGT3168951690511 Vitis vinifera chloroplast
182NC_007977AAGT31163117311 Helianthus annuus chloroplast
183NC_007977AAGT3749127492211 Helianthus annuus chloroplast
184NC_007977AAGT311319911320911 Helianthus annuus chloroplast
185NC_008096AAGT31248125811 Solanum tuberosum chloroplast
186NC_008101AAGT3443344434411 Scenedesmus obliquus chloroplast
187NC_008114AAGT3132211323313 Pseudendoclonium akinetum chloroplast
188NC_008115AAGT31288129811 Eucalyptus globulus subsp. globulus chloroplast
189NC_008155AAGT378179111 Oryza sativa Indica Group chloroplast
190NC_008235AAGT31023103311 Populus alba chloroplast
191NC_008235AAGT3667236673311 Populus alba chloroplast
192NC_008326AAGT31212122211 Liriodendron tulipifera chloroplast
193NC_008334AAGT31209121911 Citrus sinensis chloroplast
194NC_008334AAGT31777178711 Citrus sinensis chloroplast
195NC_008335AAGT31311132111 Platanus occidentalis chloroplast
196NC_008336AAGT31171118111 Nandina domestica chloroplast
197NC_008359AAGT31032104211 Morus indica chloroplast
198NC_008407AAGT31264127411 Jasminum nudiflorum chloroplast
199NC_008456AAGT380981911 Drimys granadensis chloroplast
200NC_008535AAGT313163413164411 Coffea arabica chloroplast
201NC_008535AAGT313166613167611 Coffea arabica chloroplast
202NC_008589AAGT311218111219212 Thalassiosira pseudonana chloroplast
203NC_008590AAGT31318132811 Hordeum vulgare subsp. vulgare chloroplast
204NC_008591AAGT31319132911 Agrostis stolonifera chloroplast
205NC_008602AAGT31312132211 Sorghum bicolor chloroplast
206NC_008641AAGT31149115911 Gossypium barbadense chloroplast
207NC_008788AAGT388089011 Nuphar advena chloroplast
208NC_008788AAGT315201715202711 Nuphar advena chloroplast
209NC_008796AAGT31059106911 Ranunculus macranthus chloroplast
210NC_008829AAGT38624863411 Angiopteris evecta chloroplast
211NC_009143AAGT31017102711 Populus trichocarpa chloroplast
212NC_009143AAGT3671676717711 Populus trichocarpa chloroplast
213NC_009259AAGT33952396211 Phaseolus vulgaris chloroplast
214NC_009265AAGT3289632897311 Aethionema cordifolium chloroplast
215NC_009266AAGT3290282903811 Aethionema grandiflorum chloroplast
216NC_009573AAGT310450810451912 Rhodomonas salina chloroplast
217NC_009598AAGT390591511 Chloranthus spicatus chloroplast
218NC_009599AAGT31015102511 Buxus microphylla chloroplast
219NC_009600AAGT31631164111 Illicium oligandrum chloroplast
220NC_009601AAGT378279211 Dioscorea elephantipes chloroplast
221NC_009618AAGT3733217333111 Cycas taitungensis chloroplast
222NC_009808AAGT31228123811 Ipomoea purpurea chloroplast
223NC_009950AAGT378679611 Lolium perenne chloroplast
224NC_009962AAGT396797711 Ceratophyllum demersum chloroplast
225NC_010093AAGT383584511 Acorus americanus chloroplast
226NC_010109AAGT31255126511 Lemna minor chloroplast
227NC_010323AAGT31291130111 Carica papaya chloroplast
228NC_010358AAGT31053106311 Oenothera argillicola chloroplast
229NC_010360AAGT31064107411 Oenothera glazioviana chloroplast
230NC_010361AAGT31064107411 Oenothera biennis chloroplast
231NC_010362AAGT31064107411 Oenothera parviflora chloroplast
232NC_010433AAGT31161117111 Manihot esculenta chloroplast
233NC_010442AAGT31208121811 Trachelium caeruleum chloroplast
234NC_010601AAGT31163117311 Guizotia abyssinica chloroplast
235NC_010601AAGT3749647497411 Guizotia abyssinica chloroplast
236NC_010601AAGT311347511348511 Guizotia abyssinica chloroplast
237NC_010776AAGT31136114611 Fagopyrum esculentum subsp. ancestrale chloroplast
238NC_011032AAGT379480411 Brachypodium distachyon chloroplast
239NC_011163AAGT31119112911 Cicer arietinum chloroplast
240NC_011713AAGT378879811 Festuca arundinacea chloroplast
241NC_011828AAGT31155116511 Trifolium subterraneum chloroplast
242NC_012052AAGT3539045391411 Syntrichia ruralis chloroplast
243NC_012052AAGT310104310105311 Syntrichia ruralis chloroplast
244NC_012097AAGT3118431185412 Pycnococcus provasolii chloroplast
245NC_012101AAGT3480904810011 Monomastix sp. OKE-1 chloroplast
246NC_012615AAGT31099110911 Megaleranthis saniculifolia chloroplast
247NC_012927AAGT379080011 Bambusa oldhamii chloroplast
248NC_012978AAGT3675556756511 Parachlorella kessleri chloroplast
249NC_012978AAGT311517111518212 Parachlorella kessleri chloroplast
250NC_013088AAGT381382311 Dendrocalamus latiflorus chloroplast
251NC_013273AAGT378879811 Coix lacryma-jobi chloroplast
252NC_013553AAGT31105111511 Parthenium argentatum chloroplast
253NC_013553AAGT32975298511 Parthenium argentatum chloroplast
254NC_013553AAGT3759987600811 Parthenium argentatum chloroplast
255NC_013553AAGT311394611395611 Parthenium argentatum chloroplast
256NC_013703AAGT3456894569911 Cryptomonas paramecium plastid
257NC_013823AAGT378579511 Typha latifolia chloroplast
258NC_013843AAGT33970398011 Vigna radiata chloroplast
259NC_013991AAGT384785711 Phoenix dactylifera chloroplast
260NC_014056AAGT3276962770611 Oncidium Gower Ramsey chloroplast
261NC_014057AAGT396797711 Pisum sativum chloroplast
262NC_014062AAGT379880811 Anomochloa marantoidea chloroplast
263NC_014063AAGT31011102111 Lathyrus sativus chloroplast
264NC_013707AAGT31222123211 Olea europaea chloroplast