ChloroMitoSSRDB 2.0 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

Back To Motif Summary

Chloroplast Motifs - Imperfect AATG Repeats

S.NoSequence IDMotifIterationsStartEndTract LengthSequence Name
1NC_013086AATG7843408437132 Selaginella moellendorffii plastid
2NC_008407AATG51835185420 Jasminum nudiflorum chloroplast
3NC_007407AATG4840248403815 Acorus calamus plastid
4NC_008235AATG414607914609315 Populus alba chloroplast
5NC_009143AATG414659714661115 Populus trichocarpa chloroplast
6NC_010093AATG4836998371315 Acorus americanus chloroplast
7NC_010776AATG4625916260616 Fagopyrum esculentum subsp. ancestrale chloroplast
8NC_011087AATG34787479711Paulinella chromatophora chromatophore
9NC_011087AATG331855031856112Paulinella chromatophora chromatophore
10NC_011087AATG338769338770412Paulinella chromatophora chromatophore
11NC_014267AATG3650256503511Kryptoperidinium foliaceum chloroplast
12NC_014346AATG314390514391511Floydiella terrestris chloroplast
13NC_014570AATG3436314364212Eucalyptus grandis chloroplast
14NC_014582AATG3580125802413Monsonia speciosa plastid
15NC_014582AATG3675876759812Monsonia speciosa plastid
16NC_014589AATG385086112Cathaya argyrophylla chloroplast
17NC_014589AATG37452746211Cathaya argyrophylla chloroplast
18NC_014592AATG3584375844812Cheilanthes lindheimeri chloroplast
19NC_014592AATG314049314050311Cheilanthes lindheimeri chloroplast
20NC_014674AATG3451014511212Castanea mollissima chloroplast
21NC_014676AATG3425064251712Theobroma cacao chloroplast
22NC_014807AATG3435554356612Corynocarpus laevigata chloroplast
23NC_014808AATG3192301924011Thalassiosira oceanica CCMP1005 chloroplast
24NC_014808AATG310757810758912Thalassiosira oceanica CCMP1005 chloroplast
25NC_015113AATG3410694108012Anthriscus cerefolium chloroplast
26NC_015204AATG3423744238512Gossypium thurberi chloroplast
27NC_015206AATG3411054111612Fragaria vesca subsp. vesca chloroplast
28NC_015402AATG3165101652112Ptilidium pulcherrimum chloroplast
29NC_015543AATG3296282963811Jacobaea vulgaris chloroplast
30NC_015543AATG3393833939412Jacobaea vulgaris chloroplast
31NC_015605AATG3444034441412Nelumbo lutea chloroplast
32NC_015610AATG3443694438012Nelumbo nucifera chloroplast
33NC_015621AATG3397043971512Ageratina adenophora chloroplast
34NC_015803AATG3836868369611Indocalamus longiauritus plastid
35NC_015817AATG3836268363611Phyllostachys edulis chloroplast
36NC_015820AATG3836848369411Acidosasa purpurea chloroplast
37NC_015826AATG3836478365711Phyllostachys nigra var. henonis chloroplast
38NC_015830AATG3834068341611Bambusa emeiensis chloroplast
39NC_015831AATG3835028351211Ferrocalamus rimosivaginus plastid
40NC_015891AATG3447724478312Spirodela polyrhiza chloroplast
41NC_015891AATG3679876799812Spirodela polyrhiza chloroplast
42NC_015892AATG3427024271312Magnolia kwangsiensis chloroplast
43NC_015892AATG3654666547712Magnolia kwangsiensis chloroplast
44NC_015894AATG3446154462612Wolffiella lingulata chloroplast
45NC_015899AATG3393323934312Wolffia australiana chloroplast
46NC_015899AATG3437844379512Wolffia australiana chloroplast
47NC_015990AATG3820648207411Panicum virgatum chloroplast
48NC_015996AATG3430574306812Pyrus pyrifolia chloroplast
49NC_016063AATG310492510493511Cephalotaxus wilsoniana chloroplast DNA
50NC_016068AATG3418894190012Nicotiana undulata chloroplast
51NC_016069AATG3145151452612Picea morrisonicola chloroplast
52NC_016069AATG3478854789612Picea morrisonicola chloroplast
53NC_016069AATG3691466915712Picea morrisonicola chloroplast
54NC_016471AATG3371003711011Neottia nidus-avis plastid
55NC_016668AATG3422404225112Gossypium raimondii chloroplast
56NC_016670AATG3424844249512Gossypium darwinii chloroplast
57NC_016677AATG3822788228811Leersia tisserantii plastid
58NC_016690AATG3424664247712Gossypium tomentosum chloroplast
59NC_016692AATG3423634237412Gossypium herbaceum subsp. africanum chloroplast
60NC_016699AATG3836408365011Phyllostachys propinqua chloroplast
61NC_016711AATG3424164242712Gossypium mustelinum chloroplast
62NC_016712AATG3423364234712Gossypium arboreum chloroplast
63NC_016718AATG3824418245111Rhynchoryza subulata plastid
64NC_016731AATG3841718418111Synedra acus chloroplast
65NC_016732AATG3128051281511Dunaliella salina chloroplast
66NC_016735AATG3345533456311Fucus vesiculosus chloroplast
67NC_016736AATG3241612417111Ricinus communis chloroplast
68NC_016736AATG3445544456512Ricinus communis chloroplast
69NC_016753AATG3430374304812Colocasia esculenta chloroplast
70NC_016753AATG3669246693512Colocasia esculenta chloroplast
71NC_016921AATG3415984160912Pentactina rupicola chloroplast
72NC_016927AATG3810208103011Oryza meridionalis chloroplast
73NC_016986AATG3446584466912Ginkgo biloba chloroplast
74NC_017602AATG3403354034612Elaeis guineensis chloroplast
75NC_017602AATG3627166272712Elaeis guineensis chloroplast
76NC_017609AATG3417584176912Phalaenopsis equestris chloroplast
77NC_017609AATG3788257883511Phalaenopsis equestris chloroplast
78NC_017609AATG3865848659411Phalaenopsis equestris chloroplast
79NC_017835AATG3810098101911Oryza rufipogon chloroplast
80NC_017894AATG3422594227012Gossypium gossypioides chloroplast
81NC_018109AATG3418984190912Gossypium incanum chloroplast
82NC_018110AATG3420164202712Gossypium somalense chloroplast
83NC_018111AATG3418614187212Gossypium capitis-viridis chloroplast
84NC_018112AATG3420404205112Gossypium areysianum chloroplast
85NC_018114AATG3411504116112Erycina pusilla chloroplast
86NC_018114AATG3769387694811Erycina pusilla chloroplast
87NC_018117AATG3416974170812Datura stramonium chloroplast
88NC_018357AATG3427814279212Magnolia denudata chloroplast
89NC_018357AATG3655596557012Magnolia denudata chloroplast
90NC_018523AATG3193971940711Saccharina japonica chloroplast
91NC_018541AATG3149431495412Elodea canadensis chloroplast
92NC_018552AATG3416444165512Capsicum annuum chloroplast
93NC_018766AATG3411284113912Fragaria vesca subsp. bracteata chloroplast
94NC_018767AATG3411134112412Fragaria mandshurica plastid
95NC_019601AATG3410644107512Fragaria chiloensis chloroplast
96NC_019602AATG3410954110612Fragaria virginiana chloroplast
97NC_019616AATG3562285623912Vaccinium macrocarpon plastid
98NC_019648AATG3393903940112Festuca altissima plastid
99NC_019648AATG310367710368711Festuca altissima plastid
100NC_019649AATG3383043831512Festuca ovina plastid
101NC_019649AATG310197110198111Festuca ovina plastid
102NC_019650AATG3393323934312Festuca pratensis plastid
103NC_019650AATG310379810380811Festuca pratensis plastid
104NC_019651AATG3392603927112Lolium multiflorum plastid
105NC_019651AATG310371010372011Lolium multiflorum plastid
106NC_020019AATG3420574206812Camellia sinensis chloroplast
107NC_020092AATG3394903950112Chrysanthemum x morifolium chloroplast
108NC_020146AATG3714867149712Equisetum hyemale chloroplast
109NC_020152AATG3450994511012Quercus rubra plastid
110NC_020316AATG3428994291012Magnolia officinalis chloroplast
111NC_020316AATG3656436565412Magnolia officinalis chloroplast
112NC_020317AATG3428964290712Magnolia officinalis subsp. biloba voucher SC001 chloroplast
113NC_020317AATG3656426565312Magnolia officinalis subsp. biloba voucher SC001 chloroplast
114NC_020318AATG3425144252512Magnolia grandiflora voucher NJ016 chloroplast
115NC_020318AATG3652246523512Magnolia grandiflora voucher NJ016 chloroplast
116NC_020320AATG3395043951512Chrysanthemum indicum voucher HeN001 chloroplast
117NC_020341AATG3830468305611Arundinaria gigantea chloroplast
118NC_020363AATG311201411202512Zingiber spectabile plastid
119NC_020364AATG3403214033212Pseudophoenix vinifera plastid
120NC_020364AATG3631226313312Pseudophoenix vinifera plastid
121NC_020365AATG3402044021512Calamus caryotoides plastid
122NC_020365AATG3627316274212Calamus caryotoides plastid
123NC_020366AATG3409954100612Bismarckia nobilis plastid
124NC_020366AATG3636186362912Bismarckia nobilis plastid
125NC_020367AATG3420754208612Dasypogon bromeliifolius plastid
126NC_020367AATG3638756388612Dasypogon bromeliifolius plastid
127NC_020607AATG3395063951712Artemisia frigida chloroplast
128NC_020607AATG310799210800211Artemisia frigida chloroplast
129NC_021075AATG3505365054611Calliarthron tuberculosum chloroplast
130NC_021101AATG3408104082112Francoa sonchifolia plastid
131NC_021109AATG311850911852012Pleodorina starrii plastid
132NC_021110AATG310385410386411Cephalotaxus oliveri chloroplast
133NC_021121AATG3412594127012Ardisia polysticta chloroplast
134NC_021423AATG3412654127612Catharanthus roseus cultivar Pacifica Punch Halo chloroplast
135NC_021425AATG3427784278912Tetracentron sinense chloroplast
136NC_021426AATG3439314394212Trochodendron aralioides chloroplast
137NC_021429AATG3410794109012Cymbidium aloifolium voucher KUN:YJB100604 chloroplast
138NC_021429AATG3785777858711Cymbidium aloifolium voucher KUN:YJB100604 chloroplast
139NC_021430AATG3411214113212Cymbidium sinense voucher KUN:YJB100605 chloroplast
140NC_021430AATG3778627787211Cymbidium sinense voucher KUN:YJB100605 chloroplast
141NC_021431AATG3412194123012Cymbidium tortisepalum voucher KUN:HJL091027 chloroplast
142NC_021431AATG3779087791811Cymbidium tortisepalum voucher KUN:HJL091027 chloroplast
143NC_021432AATG3406364064712Cymbidium tracyanum voucher KUN:YJB100606 chloroplast
144NC_021432AATG3779677797711Cymbidium tracyanum voucher KUN:YJB100606 chloroplast
145NC_021433AATG3409674097812Cymbidium mannii voucher KUN:YJB100602 chloroplast
146NC_021433AATG3780947810411Cymbidium mannii voucher KUN:YJB100602 chloroplast
147NC_021455AATG3412854129612Prinsepia utilis plastid
148NC_021649AATG3349073491812Glycine falcata voucher CSIRO:G1718 chloroplast
149NC_021760AATG3398033981412Triticum monococcum chloroplast
150NC_021761AATG3398693988012Secale cereale chloroplast
151NC_021762AATG3397813979212Triticum urartu chloroplast
152NC_022099AATG312189612190611Medicago truncatula cultivar Jemalong 2HA plastid
153NC_022100AATG312169612170611Medicago truncatula cultivar Borung plastid
154NC_022133AATG3396973970812Aegilops tauschii chloroplast
155NC_022135AATG3398463985712Aegilops speltoides isolate SPE0661 chloroplast
156NC_022136AATG39136914712Lygodium japonicum chloroplast
157NC_000927AATG3261572616711 Nephroselmis olivacea chloroplast
158NC_000932AATG3316163162611 Arabidopsis thaliana chloroplast
159NC_001320AATG3810078101711 Oryza sativa Japonica Group plastid
160NC_001879AATG3418764188712 Nicotiana tabacum plastid
161NC_002762AATG3401014011212 Triticum aestivum chloroplast
162NC_003119AATG312189612190611 Medicago truncatula chloroplast
163NC_003386AATG3654016541111 Psilotum nudum chloroplast
164NC_004561AATG3416194163012 Atropa belladonna chloroplast
165NC_004766AATG3578105782112 Adiantum capillus-veneris chloroplast
166NC_004799AATG3943539436412 Cyanidioschyzon merolae strain 10D chloroplast
167NC_004993AATG3412574126812 Calycanthus floridus var. glaucus chloroplast
168NC_004993AATG3628796289012 Calycanthus floridus var. glaucus chloroplast
169NC_005086AATG3452974530812 Amborella trichopoda chloroplast
170NC_005973AATG3809608097011 Oryza nivara chloroplast
171NC_006050AATG3437354374612 Nymphaea alba chloroplast
172NC_006050AATG3507305074213 Nymphaea alba chloroplast
173NC_006137AATG316298416299411 Gracilaria tenuistipitata var. liui chloroplast
174NC_006861AATG314254714255711 Huperzia lucidula chloroplast
175NC_007407AATG3406604067112 Acorus calamus plastid
176NC_007499AATG3416114162212 Phalaenopsis aphrodite subsp. formosana chloroplast
177NC_007499AATG3787837879311 Phalaenopsis aphrodite subsp. formosana chloroplast
178NC_007499AATG3865938660311 Phalaenopsis aphrodite subsp. formosana chloroplast
179NC_007500AATG3418734188412 Nicotiana sylvestris chloroplast
180NC_007578AATG3301143012411 Lactuca sativa chloroplast
181NC_007578AATG3398383984912 Lactuca sativa chloroplast
182NC_007602AATG3418024181312 Nicotiana tomentosiformis chloroplast
183NC_007898AATG3409594097012 Solanum lycopersicum chloroplast
184NC_007943AATG3409814099212 Solanum bulbocastanum chloroplast
185NC_007944AATG3423994241012 Gossypium hirsutum chloroplast
186NC_007957AATG3438694388012 Vitis vinifera chloroplast
187NC_007977AATG3399123992312 Helianthus annuus chloroplast
188NC_008096AATG3411004111112 Solanum tuberosum chloroplast
189NC_008097AATG3533535336412 Chara vulgaris chloroplast
190NC_008101AATG34372438312 Scenedesmus obliquus chloroplast
191NC_008115AATG3437504376112 Eucalyptus globulus subsp. globulus chloroplast
192NC_008116AATG315175415176512 Staurastrum punctulatum chloroplast
193NC_008117AATG3499144992512 Zygnema circumcarinatum chloroplast
194NC_008117AATG313782513783612 Zygnema circumcarinatum chloroplast
195NC_008155AATG3809648097411 Oryza sativa Indica Group chloroplast
196NC_008235AATG3312493125911 Populus alba chloroplast
197NC_008235AATG3401514016212 Populus alba chloroplast
198NC_008235AATG3834768348813 Populus alba chloroplast
199NC_008325AATG3404804049112 Daucus carota chloroplast
200NC_008326AATG3428834289412 Liriodendron tulipifera chloroplast
201NC_008326AATG3655576556812 Liriodendron tulipifera chloroplast
202NC_008334AATG3435044351512 Citrus sinensis chloroplast
203NC_008335AATG3445174452812 Platanus occidentalis chloroplast
204NC_008336AATG3411534116412 Nandina domestica chloroplast
205NC_008359AATG3421694218012 Morus indica chloroplast
206NC_008372AATG319417419418411 Stigeoclonium helveticum chloroplast
207NC_008407AATG3649566496611 Jasminum nudiflorum chloroplast
208NC_008407AATG312022312023412 Jasminum nudiflorum chloroplast
209NC_008456AATG3428834289412 Drimys granadensis chloroplast
210NC_008456AATG3660426605312 Drimys granadensis chloroplast
211NC_008457AATG3418824189312 Piper cenocladum chloroplast
212NC_008457AATG3648676487812 Piper cenocladum chloroplast
213NC_008535AATG3407854079612 Coffea arabica chloroplast
214NC_008590AATG3402654027612 Hordeum vulgare subsp. vulgare chloroplast
215NC_008591AATG3399503996112 Agrostis stolonifera chloroplast
216NC_008591AATG3814928150211 Agrostis stolonifera chloroplast
217NC_008641AATG3424504246112 Gossypium barbadense chloroplast
218NC_009143AATG3315953160511 Populus trichocarpa chloroplast
219NC_009143AATG3404654047612 Populus trichocarpa chloroplast
220NC_009143AATG3839888400013 Populus trichocarpa chloroplast
221NC_009272AATG3307513076111 Draba nemorosa chloroplast
222NC_009573AATG311417711418812 Rhodomonas salina chloroplast
223NC_009598AATG3415734158412 Chloranthus spicatus chloroplast
224NC_009599AATG3428894290012 Buxus microphylla chloroplast
225NC_009600AATG3432104322112 Illicium oligandrum chloroplast
226NC_009600AATG3655346554512 Illicium oligandrum chloroplast
227NC_009600AATG3760217603212 Illicium oligandrum chloroplast
228NC_009601AATG3398263983712 Dioscorea elephantipes chloroplast
229NC_009601AATG3609466095712 Dioscorea elephantipes chloroplast
230NC_009618AATG3418134182412 Cycas taitungensis chloroplast
231NC_009765AATG3336243363411 Cuscuta gronovii chloroplast
232NC_009765AATG3384343844512 Cuscuta gronovii chloroplast
233NC_009766AATG3347553476612 Cuscuta reflexa chloroplast
234NC_009808AATG3184511846212 Ipomoea purpurea chloroplast
235NC_009808AATG3418124182312 Ipomoea purpurea chloroplast
236NC_009949AATG3329713298111 Cuscuta obtusiflora chloroplast
237NC_009950AATG3393803939112 Lolium perenne chloroplast
238NC_009950AATG310385010386011 Lolium perenne chloroplast
239NC_009962AATG3414894150012 Ceratophyllum demersum chloroplast
240NC_009962AATG3643126432312 Ceratophyllum demersum chloroplast
241NC_009962AATG311536211537312 Ceratophyllum demersum chloroplast
242NC_009963AATG3362063621712 Cuscuta exaltata chloroplast
243NC_010093AATG3403404035112 Acorus americanus chloroplast
244NC_010109AATG3433324334312 Lemna minor chloroplast
245NC_010109AATG3666606667112 Lemna minor chloroplast
246NC_010323AATG32183219412 Carica papaya chloroplast
247NC_010323AATG3426174262812 Carica papaya chloroplast
248NC_010433AATG3429394295012 Manihot esculenta chloroplast
249NC_010548AATG3154071541812 Cryptomeria japonica chloroplast
250NC_010601AATG3396623967312 Guizotia abyssinica chloroplast
251NC_010654AATG3126461265712 Welwitschia mirabilis chloroplast
252NC_010654AATG3613186132912 Welwitschia mirabilis chloroplast
253NC_010776AATG3402564026712 Fagopyrum esculentum subsp. ancestrale chloroplast
254NC_011031AATG3106901070112 Oedogonium cardiacum chloroplast
255NC_011031AATG316252616253712 Oedogonium cardiacum chloroplast
256NC_011032AATG3798677987711 Brachypodium distachyon chloroplast
257NC_011152AATG3544485445912 Picea sitchensis chloroplast
258NC_011713AATG3397503976112 Festuca arundinacea chloroplast
259NC_011713AATG310464010465011 Festuca arundinacea chloroplast
260NC_011828AATG312124312125412 Trifolium subterraneum chloroplast
261NC_011828AATG313785113786111 Trifolium subterraneum chloroplast
262NC_012052AATG3797117972111 Syntrichia ruralis chloroplast
263NC_012224AATG3451814519212 Jatropha curcas chloroplast
264NC_012927AATG3833038331311 Bambusa oldhamii chloroplast
265NC_013086AATG3834298344012 Selaginella moellendorffii plastid
266NC_013088AATG3834078341711 Dendrocalamus latiflorus chloroplast
267NC_013553AATG3403744038512 Parthenium argentatum chloroplast
268NC_013553AATG311335811336912 Parthenium argentatum chloroplast
269NC_013823AATG3428664287712 Typha latifolia chloroplast
270NC_013823AATG3662726628312 Typha latifolia chloroplast
271NC_013991AATG3407544076512 Phoenix dactylifera chloroplast
272NC_013991AATG3634196343012 Phoenix dactylifera chloroplast
273NC_014056AATG3397273973812 Oncidium Gower Ramsey chloroplast
274NC_014056AATG3753957540511 Oncidium Gower Ramsey chloroplast
275NC_014057AATG311062511063612 Pisum sativum chloroplast
276NC_014062AATG3611916120212 Anomochloa marantoidea chloroplast