ChloroMitoSSRDB 2.0 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

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Chloroplast Motifs - Imperfect ATG Repeats

S.NoSequence IDMotifIterationsStartEndTract LengthSequence Name
1NC_016063ATG913572713575327Cephalotaxus wilsoniana chloroplast DNA
2NC_021110ATG813383413385724Cephalotaxus oliveri chloroplast
3NC_015204ATG7182751829521Gossypium thurberi chloroplast
4NC_016668ATG7181761819621Gossypium raimondii chloroplast
5NC_016690ATG7183071832721Gossypium tomentosum chloroplast
6NC_016692ATG7182631828321Gossypium herbaceum subsp. africanum chloroplast
7NC_016711ATG7182691828921Gossypium mustelinum chloroplast
8NC_016712ATG7182631828321Gossypium arboreum chloroplast
9NC_017894ATG7181941821421Gossypium gossypioides chloroplast
10NC_018109ATG7180421806221Gossypium incanum chloroplast
11NC_018110ATG7181161813621Gossypium somalense chloroplast
12NC_018111ATG7181591817921Gossypium capitis-viridis chloroplast
13NC_018112ATG7181161813621Gossypium areysianum chloroplast
14NC_018113ATG7183201834021Gossypium robinsonii chloroplast
15NC_007944ATG7182931831321 Gossypium hirsutum chloroplast
16NC_004799ATG5636246363815 Cyanidioschyzon merolae strain 10D chloroplast
17NC_008099ATG5824988251114 Oltmannsiellopsis viridis chloroplast
18NC_008335ATG5927719278515 Platanus occidentalis chloroplast
19NC_008589ATG5593805939415 Thalassiosira pseudonana chloroplast
20NC_010433ATG5610586107215 Manihot esculenta chloroplast
21NC_010433ATG5611366115015 Manihot esculenta chloroplast
22NC_011087ATG483028883029912Paulinella chromatophora chromatophore
23NC_014267ATG4912339124412Kryptoperidinium foliaceum chloroplast
24NC_014287ATG43777378711Durinskia baltica chloroplast
25NC_014346ATG414093114094313Floydiella terrestris chloroplast
26NC_014569ATG4923149232411Erodium texanum plastid
27NC_014570ATG4421384214811Eucalyptus grandis chloroplast
28NC_014570ATG4443624437211Eucalyptus grandis chloroplast
29NC_014570ATG4520845209512Eucalyptus grandis chloroplast
30NC_014589ATG4539415395111Cathaya argyrophylla chloroplast
31NC_014589ATG4876568766712Cathaya argyrophylla chloroplast
32NC_014589ATG410647910648911Cathaya argyrophylla chloroplast
33NC_014592ATG4400694007911Cheilanthes lindheimeri chloroplast
34NC_014674ATG47702771312Castanea mollissima chloroplast
35NC_014674ATG4436084361811Castanea mollissima chloroplast
36NC_014697ATG4400534006311Prunus persica chloroplast
37NC_014699ATG4410744108411Equisetum arvense chloroplast
38NC_014807ATG4420624207211Corynocarpus laevigata chloroplast
39NC_014808ATG4512205123011Thalassiosira oceanica CCMP1005 chloroplast
40NC_014808ATG4692846929411Thalassiosira oceanica CCMP1005 chloroplast
41NC_015083ATG4387353874511Erodium carvifolium chloroplast
42NC_015084ATG4473334734513Coccomyxa sp. C-169 plastid
43NC_015113ATG4395763958611Anthriscus cerefolium chloroplast
44NC_015139ATG4401124012211Brassica rapa subsp. pekinensis chloroplast
45NC_015402ATG4455814559111Ptilidium pulcherrimum chloroplast
46NC_015402ATG4657266573611Ptilidium pulcherrimum chloroplast
47NC_015403ATG410106910107911Fistulifera sp. JPCC DA0580 chloroplast
48NC_015543ATG4378903790011Jacobaea vulgaris chloroplast
49NC_015605ATG4429104292011Nelumbo lutea chloroplast
50NC_015610ATG4428764288611Nelumbo nucifera chloroplast
51NC_015621ATG4382113822111Ageratina adenophora chloroplast
52NC_015891ATG4432794328911Spirodela polyrhiza chloroplast
53NC_015892ATG4412094121911Magnolia kwangsiensis chloroplast
54NC_015894ATG4220622207312Wolffiella lingulata chloroplast
55NC_015894ATG4431224313211Wolffiella lingulata chloroplast
56NC_015899ATG4422914230111Wolffia australiana chloroplast
57NC_015983ATG4408974090711Cucumis melo subsp. melo chloroplast
58NC_015990ATG4398503986011Panicum virgatum chloroplast
59NC_015996ATG4415644157411Pyrus pyrifolia chloroplast
60NC_016058ATG48557856711Larix decidua chloroplast
61NC_016058ATG4674826749211Larix decidua chloroplast
62NC_016063ATG4566365664611Cephalotaxus wilsoniana chloroplast DNA
63NC_016063ATG4852718528212Cephalotaxus wilsoniana chloroplast DNA
64NC_016064ATG4405874059711Pseudotsuga sinensis var. wilsoniana chloroplast
65NC_016064ATG4993969940611Pseudotsuga sinensis var. wilsoniana chloroplast
66NC_016065ATG42950296112Taiwania cryptomerioides chloroplast DNA
67NC_016065ATG4628096281911Taiwania cryptomerioides chloroplast DNA
68NC_016069ATG4275882759912Picea morrisonicola chloroplast
69NC_016069ATG4463924640211Picea morrisonicola chloroplast
70NC_016069ATG410505810506811Picea morrisonicola chloroplast
71NC_016430ATG4409944100411Eleutherococcus senticosus chloroplast
72NC_016433ATG4392223923211Sesamum indicum chloroplast
73NC_016468ATG4392323924211Boea hygrometrica chloroplast
74NC_016670ATG4183031831412Gossypium darwinii chloroplast
75NC_016677ATG4394363944611Leersia tisserantii plastid
76NC_016703ATG41768178013Phaeocystis antarctica strain CCMP1374 plastid
77NC_016718ATG4393183932811Rhynchoryza subulata plastid
78NC_016727ATG4348383485013Silene vulgaris chloroplast
79NC_016727ATG4366983670811Silene vulgaris chloroplast
80NC_016728ATG414706414707613Silene noctiflora chloroplast
81NC_016729ATG4333653337713Silene conica chloroplast
82NC_016729ATG4352033521311Silene conica chloroplast
83NC_016729ATG412537112538111Silene conica chloroplast
84NC_016729ATG412543012544011Silene conica chloroplast
85NC_016730ATG4368263683611Silene latifolia chloroplast
86NC_016731ATG4473874739812Synedra acus chloroplast
87NC_016734ATG4400594006911Brassica napus chloroplast
88NC_016735ATG4173541736512Fucus vesiculosus chloroplast
89NC_016921ATG4401054011511Pentactina rupicola chloroplast
90NC_016927ATG4381453815511Oryza meridionalis chloroplast
91NC_016986ATG4222842229512Ginkgo biloba chloroplast
92NC_016986ATG4431654317511Ginkgo biloba chloroplast
93NC_017006ATG4545985460811Mankyua chejuensis chloroplast
94NC_017006ATG4651666517712Mankyua chejuensis chloroplast
95NC_017602ATG4388423885211Elaeis guineensis chloroplast
96NC_017609ATG4402654027511Phalaenopsis equestris chloroplast
97NC_017835ATG4381383814811Oryza rufipogon chloroplast
98NC_017928ATG49229923911Plasmodium falciparum HB3 apicoplast
99NC_018051ATG42596260712Vigna unguiculata chloroplast
100NC_018114ATG4396573966711Erycina pusilla chloroplast
101NC_018357ATG4412884129811Magnolia denudata chloroplast
102NC_018523ATG4722547226512Saccharina japonica chloroplast
103NC_018523ATG410491910493012Saccharina japonica chloroplast
104NC_018541ATG4207942080512Elodea canadensis chloroplast
105NC_018541ATG4399183992811Elodea canadensis chloroplast
106NC_018565ATG4385813859111Pachycladon enysii chloroplast
107NC_018565ATG4408054081511Pachycladon enysii chloroplast
108NC_018569ATG4352803529011Trebouxiophyceae sp. MX-AZ01 chloroplast
109NC_019616ATG4547355474511Vaccinium macrocarpon plastid
110NC_019616ATG413403313404311Vaccinium macrocarpon plastid
111NC_020018ATG4632476325711Monomorphina aenigmatica strain UTEX1284 chloroplast
112NC_020019ATG4405644057411Camellia sinensis chloroplast
113NC_020092ATG4379973800711Chrysanthemum x morifolium chloroplast
114NC_020092ATG4402214023111Chrysanthemum x morifolium chloroplast
115NC_020098ATG4395743958411Tectona grandis chloroplast
116NC_020146ATG4827278273812Equisetum hyemale chloroplast
117NC_020152ATG47725773612Quercus rubra plastid
118NC_020152ATG4436064361611Quercus rubra plastid
119NC_020316ATG4414064141611Magnolia officinalis chloroplast
120NC_020317ATG4414034141311Magnolia officinalis subsp. biloba voucher SC001 chloroplast
121NC_020318ATG4410214103111Magnolia grandiflora voucher NJ016 chloroplast
122NC_020320ATG4380113802111Chrysanthemum indicum voucher HeN001 chloroplast
123NC_020320ATG4402354024511Chrysanthemum indicum voucher HeN001 chloroplast
124NC_020361ATG4389103892011Podocarpus totara chloroplast
125NC_020361ATG412688612689712Podocarpus totara chloroplast
126NC_020362ATG4428194282911Heliconia collinsiana plastid
127NC_020363ATG4400734008311Zingiber spectabile plastid
128NC_020363ATG4422974230711Zingiber spectabile plastid
129NC_020363ATG4850808509112Zingiber spectabile plastid
130NC_020364ATG4316653167612Pseudophoenix vinifera plastid
131NC_020364ATG4388283883811Pseudophoenix vinifera plastid
132NC_020365ATG4387113872111Calamus caryotoides plastid
133NC_020366ATG4395023951211Bismarckia nobilis plastid
134NC_020367ATG4405824059211Dasypogon bromeliifolius plastid
135NC_020431ATG4379833799311Salvia miltiorrhiza chloroplast
136NC_020431ATG4402074021711Salvia miltiorrhiza chloroplast
137NC_020607ATG4380133802311Artemisia frigida chloroplast
138NC_020607ATG4402374024711Artemisia frigida chloroplast
139NC_021091ATG42626263712Vigna angularis chloroplast DNA
140NC_021101ATG4393173932711Francoa sonchifolia plastid
141NC_021101ATG4493514936212Francoa sonchifolia plastid
142NC_021102ATG4381473815711Pachycladon cheesemanii chloroplast
143NC_021102ATG4403714038111Pachycladon cheesemanii chloroplast
144NC_021109ATG4642956430713Pleodorina starrii plastid
145NC_021110ATG4561715618111Cephalotaxus oliveri chloroplast
146NC_021110ATG4583925840211Cephalotaxus oliveri chloroplast
147NC_021110ATG4846408465112Cephalotaxus oliveri chloroplast
148NC_021121ATG4397663977611Ardisia polysticta chloroplast
149NC_021121ATG4493664937712Ardisia polysticta chloroplast
150NC_021372ATG4404744048411Pharus latifolius chloroplast
151NC_021423ATG4397723978211Catharanthus roseus cultivar Pacifica Punch Halo chloroplast
152NC_021425ATG4412854129511Tetracentron sinense chloroplast
153NC_021426ATG4424384244811Trochodendron aralioides chloroplast
154NC_021429ATG4395863959611Cymbidium aloifolium voucher KUN:YJB100604 chloroplast
155NC_021430ATG4396283963811Cymbidium sinense voucher KUN:YJB100605 chloroplast
156NC_021431ATG4397263973611Cymbidium tortisepalum voucher KUN:HJL091027 chloroplast
157NC_021432ATG4391433915311Cymbidium tracyanum voucher KUN:YJB100606 chloroplast
158NC_021433ATG4394743948411Cymbidium mannii voucher KUN:YJB100602 chloroplast
159NC_021437ATG43181319212Cunninghamia lanceolata chloroplast
160NC_021438ATG4105321054211Gnetum montanum chloroplast
161NC_021441ATG42950296112Taiwania flousiana chloroplast
162NC_021441ATG4628576286711Taiwania flousiana chloroplast
163NC_021449ATG4378883789811Utricularia gibba chloroplast
164NC_021449ATG4401124012211Utricularia gibba chloroplast
165NC_021455ATG4397923980211Prinsepia utilis plastid
166NC_021618ATG410525310526412Grateloupia taiwanensis plastid
167NC_021618ATG414498514499612Grateloupia taiwanensis plastid
168NC_021636ATG4578535786412Glycine tomentella voucher CSIRO:G1403 chloroplast
169NC_021645ATG4578255783612Glycine cyrtoloba voucher CSIRO:G1267 chloroplast
170NC_021646ATG4578845789512Glycine stenophita voucher CSIRO:G1974 chloroplast
171NC_021647ATG4578235783412Glycine canescens voucher CSIRO:G1232 chloroplast
172NC_021648ATG4578695788012Glycine dolichocarpa voucher CSIRO:G1134 chloroplast
173NC_021649ATG4580045801512Glycine falcata voucher CSIRO:G1718 chloroplast
174NC_021650ATG4578685787912Glycine syndetika voucher CSIRO:G1300 chloroplast
175NC_021936ATG4447554476511Najas flexilis chloroplast
176NC_022099ATG4449094492012Medicago truncatula cultivar Jemalong 2HA plastid
177NC_022099ATG410211110212111Medicago truncatula cultivar Jemalong 2HA plastid
178NC_022099ATG410433510434511Medicago truncatula cultivar Jemalong 2HA plastid
179NC_022100ATG4449654497612Medicago truncatula cultivar Borung plastid
180NC_022100ATG410191810192811Medicago truncatula cultivar Borung plastid
181NC_022100ATG410414210415211Medicago truncatula cultivar Borung plastid
182NC_022136ATG4633396335012Lygodium japonicum chloroplast
183NC_000927ATG4367603677112 Nephroselmis olivacea chloroplast
184NC_000927ATG416771816772912 Nephroselmis olivacea chloroplast
185NC_000932ATG4387493875911 Arabidopsis thaliana chloroplast
186NC_000932ATG4409734098311 Arabidopsis thaliana chloroplast
187NC_001319ATG4463234633311 Marchantia polymorpha chloroplast
188NC_001319ATG4660176602711 Marchantia polymorpha chloroplast
189NC_001320ATG4381423815211 Oryza sativa Japonica Group plastid
190NC_001666ATG4404934050311 Zea mays chloroplast
191NC_001675ATG410831110832212 Cyanophora paradoxa cyanelle
192NC_002202ATG4356033561513 Spinacia oleracea plastid
193NC_002202ATG4374443745411 Spinacia oleracea plastid
194NC_002202ATG410763110764111 Spinacia oleracea plastid
195NC_003119ATG4449094492012 Medicago truncatula chloroplast
196NC_003119ATG410211110212111 Medicago truncatula chloroplast
197NC_003119ATG410433510434511 Medicago truncatula chloroplast
198NC_004543ATG4582785828811 Anthoceros formosae chloroplast
199NC_004766ATG4353503536112 Adiantum capillus-veneris chloroplast
200NC_004799ATG44119413012 Cyanidioschyzon merolae strain 10D chloroplast
201NC_004799ATG4728817289212 Cyanidioschyzon merolae strain 10D chloroplast
202NC_004799ATG4931169312712 Cyanidioschyzon merolae strain 10D chloroplast
203NC_004799ATG414034314035311 Cyanidioschyzon merolae strain 10D chloroplast
204NC_004993ATG4397643977411 Calycanthus floridus var. glaucus chloroplast
205NC_005086ATG4438044381411 Amborella trichopoda chloroplast
206NC_005087ATG4381363814611 Physcomitrella patens subsp. patens chloroplast
207NC_005878ATG410267410268411 Saccharum hybrid cultivar SP-80-3280 chloroplast
208NC_005973ATG4380763808611 Oryza nivara chloroplast
209NC_006084ATG4410474105711 Saccharum hybrid cultivar NCo 310 chloroplast
210NC_006137ATG4472504726011 Gracilaria tenuistipitata var. liui chloroplast
211NC_006290ATG4406964070611 Panax ginseng chloroplast
212NC_006861ATG4691816919212 Huperzia lucidula chloroplast
213NC_007144ATG4408794088911 Cucumis sativus chloroplast
214NC_007407ATG4391673917711 Acorus calamus plastid
215NC_007499ATG4401184012811 Phalaenopsis aphrodite subsp. formosana chloroplast
216NC_007578ATG4383453835511 Lactuca sativa chloroplast
217NC_007942ATG4571195713012 Glycine max chloroplast
218NC_007957ATG4423764238611 Vitis vinifera chloroplast
219NC_007957ATG4520355204612 Vitis vinifera chloroplast
220NC_007977ATG4384193842911 Helianthus annuus chloroplast
221NC_008097ATG4999369994712 Chara vulgaris chloroplast
222NC_008097ATG417470817471912 Chara vulgaris chloroplast
223NC_008099ATG4386353864612 Oltmannsiellopsis viridis chloroplast
224NC_008100ATG42822283312 Helicosporidium sp. ex Simulium jonesii plastid
225NC_008100ATG4118151182612 Helicosporidium sp. ex Simulium jonesii plastid
226NC_008115ATG4422574226711 Eucalyptus globulus subsp. globulus chloroplast
227NC_008115ATG4444814449111 Eucalyptus globulus subsp. globulus chloroplast
228NC_008115ATG4521785218912 Eucalyptus globulus subsp. globulus chloroplast
229NC_008155ATG4381023811211 Oryza sativa Indica Group chloroplast
230NC_008235ATG4386583866811 Populus alba chloroplast
231NC_008325ATG4389873899711 Daucus carota chloroplast
232NC_008326ATG4413904140011 Liriodendron tulipifera chloroplast
233NC_008334ATG4420114202111 Citrus sinensis chloroplast
234NC_008335ATG4430244303411 Platanus occidentalis chloroplast
235NC_008336ATG4396603967011 Nandina domestica chloroplast
236NC_008359ATG4406764068611 Morus indica chloroplast
237NC_008407ATG412185712186812 Jasminum nudiflorum chloroplast
238NC_008408ATG4411764118611 Bigelowiella natans plastid
239NC_008454ATG4635946360411 Pelargonium x hortorum chloroplast
240NC_008454ATG4978569786611 Pelargonium x hortorum chloroplast
241NC_008456ATG4413904140011 Drimys granadensis chloroplast
242NC_008456ATG4436144362411 Drimys granadensis chloroplast
243NC_008457ATG4403894039911 Piper cenocladum chloroplast
244NC_008588ATG43677368711 Phaeodactylum tricornutum chloroplast
245NC_008602ATG4412664127611 Sorghum bicolor chloroplast
246NC_008641ATG4183071831812 Gossypium barbadense chloroplast
247NC_008796ATG411892011893112 Ranunculus macranthus chloroplast
248NC_008829ATG4463094631911 Angiopteris evecta chloroplast
249NC_009143ATG4389723898211 Populus trichocarpa chloroplast
250NC_009259ATG42614262512 Phaseolus vulgaris chloroplast
251NC_009265ATG4383333834311 Aethionema cordifolium chloroplast
252NC_009265ATG4405574056711 Aethionema cordifolium chloroplast
253NC_009266ATG4383983840811 Aethionema grandiflorum chloroplast
254NC_009266ATG4406224063211 Aethionema grandiflorum chloroplast
255NC_009267ATG4383853839511 Olimarabidopsis pumila chloroplast
256NC_009267ATG4406094061911 Olimarabidopsis pumila chloroplast
257NC_009268ATG4401944020411 Arabis hirsuta chloroplast
258NC_009269ATG4386363864611 Barbarea verna chloroplast
259NC_009269ATG4408604087011 Barbarea verna chloroplast
260NC_009270ATG4381943820411 Capsella bursa-pastoris chloroplast
261NC_009270ATG4404184042811 Capsella bursa-pastoris chloroplast
262NC_009271ATG4383643837411 Crucihimalaya wallichii chloroplast
263NC_009272ATG4399643997411 Draba nemorosa chloroplast
264NC_009273ATG4383743838411 Lepidium virginicum chloroplast
265NC_009273ATG4405984060811 Lepidium virginicum chloroplast
266NC_009274ATG4372973730711 Lobularia maritima chloroplast
267NC_009274ATG4395213953111 Lobularia maritima chloroplast
268NC_009275ATG4384023841211 Nasturtium officinale chloroplast
269NC_009275ATG4406264063611 Nasturtium officinale chloroplast
270NC_009573ATG413111013112011 Rhodomonas salina chloroplast
271NC_009598ATG4400804009011 Chloranthus spicatus chloroplast
272NC_009598ATG4631156312511 Chloranthus spicatus chloroplast
273NC_009600ATG4208192082911 Illicium oligandrum chloroplast
274NC_009600ATG4348543486613 Illicium oligandrum chloroplast
275NC_009600ATG4417174172711 Illicium oligandrum chloroplast
276NC_009600ATG4439414395111 Illicium oligandrum chloroplast
277NC_009601ATG4383343834411 Dioscorea elephantipes chloroplast
278NC_009618ATG4216162162712 Cycas taitungensis chloroplast
279NC_009618ATG4403204033011 Cycas taitungensis chloroplast
280NC_009618ATG4425444255411 Cycas taitungensis chloroplast
281NC_009618ATG4537045371411 Cycas taitungensis chloroplast
282NC_009681ATG414469314470311 Leptosira terrestris chloroplast
283NC_009962ATG4292042921613 Ceratophyllum demersum chloroplast
284NC_009962ATG4482144822411 Ceratophyllum demersum chloroplast
285NC_009963ATG4135811359212 Cuscuta exaltata chloroplast
286NC_010093ATG4388473885711 Acorus americanus chloroplast
287NC_010323ATG4141631417311 Carica papaya chloroplast
288NC_010433ATG4610196103012 Manihot esculenta chloroplast
289NC_010433ATG4610406105112 Manihot esculenta chloroplast
290NC_010433ATG4611186112912 Manihot esculenta chloroplast
291NC_010548ATG4438704388112 Cryptomeria japonica chloroplast
292NC_010601ATG4381693817911 Guizotia abyssinica chloroplast
293NC_010654ATG4111561116611 Welwitschia mirabilis chloroplast
294NC_010654ATG4133771338711 Welwitschia mirabilis chloroplast
295NC_010772ATG412795512796612 Heterosigma akashiwo chloroplast
296NC_011031ATG45272528312 Oedogonium cardiacum chloroplast
297NC_011031ATG410249510250511 Oedogonium cardiacum chloroplast
298NC_011163ATG4538795388911 Cicer arietinum chloroplast
299NC_011163ATG4567615677212 Cicer arietinum chloroplast
300NC_011828ATG4529295293911 Trifolium subterraneum chloroplast
301NC_011828ATG4551535516311 Trifolium subterraneum chloroplast
302NC_011954ATG4107271073711 Ephedra equisetina chloroplast
303NC_012052ATG4387813879111 Syntrichia ruralis chloroplast
304NC_012099ATG4820658207612 Pyramimonas parkeae chloroplast
305NC_012099ATG4854368544611 Pyramimonas parkeae chloroplast
306NC_012101ATG4894018941212 Monomastix sp. OKE-1 chloroplast
307NC_012575ATG41923193412 Micromonas sp. RCC299 chloroplast
308NC_012575ATG4628716288313 Micromonas sp. RCC299 chloroplast
309NC_012818ATG4251782518811 Alsophila spinulosa chloroplast
310NC_012818ATG4404054041511 Alsophila spinulosa chloroplast
311NC_012978ATG46335634511 Parachlorella kessleri chloroplast
312NC_012978ATG48967897711 Parachlorella kessleri chloroplast
313NC_013086ATG4736017361111 Selaginella moellendorffii plastid
314NC_013273ATG4407564076611 Coix lacryma-jobi chloroplast
315NC_013498ATG4303973040711 Ectocarpus siliculosus chloroplast
316NC_013498ATG412548112549212 Ectocarpus siliculosus chloroplast
317NC_013553ATG4388813889111 Parthenium argentatum chloroplast
318NC_013823ATG4413734138311 Typha latifolia chloroplast
319NC_013843ATG42620263112 Vigna radiata chloroplast
320NC_013991ATG4392613927111 Phoenix dactylifera chloroplast
321NC_014056ATG4382343824411 Oncidium Gower Ramsey chloroplast
322NC_014057ATG4330903310011 Pisum sativum chloroplast
323NC_014057ATG4362373624812 Pisum sativum chloroplast
324NC_014062ATG4402714028111 Anomochloa marantoidea chloroplast