ChloroMitoSSRDB 2.0 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

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Chloroplast Motifs - Imperfect TTCC Repeats

S.NoSequence IDMotifIterationsStartEndTract LengthSequence Name
1NC_014346TTCC324026324027311Floydiella terrestris chloroplast
2NC_014348TTCC3868178682812Pteridium aquilinum subsp. aquilinum chloroplast
3NC_014589TTCC3173751738612Cathaya argyrophylla chloroplast
4NC_014592TTCC314305714306913Cheilanthes lindheimeri chloroplast
5NC_014674TTCC3644086441811Castanea mollissima chloroplast
6NC_014807TTCC310733610734712Corynocarpus laevigata chloroplast
7NC_014807TTCC313438213439211Corynocarpus laevigata chloroplast
8NC_015113TTCC313003013004011Anthriscus cerefolium chloroplast
9NC_015206TTCC3361433615311Fragaria vesca subsp. vesca chloroplast
10NC_015401TTCC313106513107511Olea europaea subsp. europaea plastid
11NC_015604TTCC313106313107311Olea europaea subsp. cuspidata chloroplast
12NC_015605TTCC313784913785911Nelumbo lutea chloroplast
13NC_015608TTCC313115813116811Olea woodiana subsp. woodiana chloroplast
14NC_015610TTCC313793813794811Nelumbo nucifera chloroplast
15NC_015623TTCC313108613109611Olea europaea subsp. maroccana chloroplast
16NC_015891TTCC314328214329211Spirodela polyrhiza chloroplast
17NC_015892TTCC313429413430411Magnolia kwangsiensis chloroplast
18NC_015894TTCC3787537876412Wolffiella lingulata chloroplast
19NC_015894TTCC314396314397311Wolffiella lingulata chloroplast
20NC_015899TTCC3782797829012Wolffia australiana chloroplast
21NC_015899TTCC314313914314911Wolffia australiana chloroplast
22NC_015983TTCC313126013127011Cucumis melo subsp. melo chloroplast
23NC_015996TTCC3462794629012Pyrus pyrifolia chloroplast
24NC_016063TTCC3622496226012Cephalotaxus wilsoniana chloroplast DNA
25NC_016068TTCC3720937210311Nicotiana undulata chloroplast
26NC_016068TTCC313136813137811Nicotiana undulata chloroplast
27NC_016069TTCC3520855209612Picea morrisonicola chloroplast
28NC_016433TTCC3709057091511Sesamum indicum chloroplast
29NC_016433TTCC312903612904611Sesamum indicum chloroplast
30NC_016468TTCC312870012871011Boea hygrometrica chloroplast
31NC_016468TTCC314413114414212Boea hygrometrica chloroplast
32NC_016703TTCC39476948611Phaeocystis antarctica strain CCMP1374 plastid
33NC_016730TTCC3621356214713Silene latifolia chloroplast
34NC_016736TTCC3241952420511Ricinus communis chloroplast
35NC_016753TTCC313684513685511Colocasia esculenta chloroplast
36NC_016753TTCC314280814281912Colocasia esculenta chloroplast
37NC_016986TTCC3851618517313Ginkgo biloba chloroplast
38NC_017006TTCC3340803409011Mankyua chejuensis chloroplast
39NC_017006TTCC3507755078713Mankyua chejuensis chloroplast
40NC_017602TTCC313108313109311Elaeis guineensis chloroplast
41NC_018051TTCC312510612511611Vigna unguiculata chloroplast
42NC_018117TTCC313120313121311Datura stramonium chloroplast
43NC_018357TTCC313459513460511Magnolia denudata chloroplast
44NC_018552TTCC313196713197711Capsicum annuum chloroplast
45NC_018766TTCC3361583616811Fragaria vesca subsp. bracteata chloroplast
46NC_018767TTCC3361433615311Fragaria mandshurica plastid
47NC_019601TTCC3360973610711Fragaria chiloensis chloroplast
48NC_019602TTCC3360963610611Fragaria virginiana chloroplast
49NC_019628TTCC310459810460811Pellia endiviifolia chloroplast
50NC_020092TTCC312647812648811Chrysanthemum x morifolium chloroplast
51NC_020098TTCC312942012943011Tectona grandis chloroplast
52NC_020152TTCC3643856439511Quercus rubra plastid
53NC_020316TTCC313473813474811Magnolia officinalis chloroplast
54NC_020317TTCC313468713469711Magnolia officinalis subsp. biloba voucher SC001 chloroplast
55NC_020318TTCC313418013419011Magnolia grandiflora voucher NJ016 chloroplast
56NC_020320TTCC312640412641411Chrysanthemum indicum voucher HeN001 chloroplast
57NC_020362TTCC313618813619811Heliconia collinsiana plastid
58NC_020364TTCC313176313177311Pseudophoenix vinifera plastid
59NC_020365TTCC313138213139211Calamus caryotoides plastid
60NC_020366TTCC313227313228311Bismarckia nobilis plastid
61NC_020367TTCC313179413180411Dasypogon bromeliifolius plastid
62NC_020431TTCC312668612669611Salvia miltiorrhiza chloroplast
63NC_020607TTCC312650312651311Artemisia frigida chloroplast
64NC_021091TTCC312555012556011Vigna angularis chloroplast DNA
65NC_021110TTCC3618036181412Cephalotaxus oliveri chloroplast
66NC_021111TTCC3885168852712Cistanche deserticola chloroplast
67NC_021121TTCC313127113128111Ardisia polysticta chloroplast
68NC_021189TTCC3310653107612Pyropia haitanensis voucher PH-38 chloroplast
69NC_021423TTCC313016113017111Catharanthus roseus cultivar Pacifica Punch Halo chloroplast
70NC_021425TTCC313516013517011Tetracentron sinense chloroplast
71NC_021426TTCC313649413650411Trochodendron aralioides chloroplast
72NC_021429TTCC312638212639413Cymbidium aloifolium voucher KUN:YJB100604 chloroplast
73NC_021433TTCC312516312517513Cymbidium mannii voucher KUN:YJB100602 chloroplast
74NC_021449TTCC312768612769611Utricularia gibba chloroplast
75NC_021637TTCC39578958811Phaeocystis globosa strain Pg-G(A) chloroplast
76NC_021936TTCC310475210476312Najas flexilis chloroplast
77NC_021936TTCC311966311967311Najas flexilis chloroplast
78NC_021936TTCC313124713125711Najas flexilis chloroplast
79NC_021936TTCC313710813711811Najas flexilis chloroplast
80NC_022099TTCC310624210625312Medicago truncatula cultivar Jemalong 2HA plastid
81NC_022100TTCC310604210605312Medicago truncatula cultivar Borung plastid
82NC_000925TTCC313027513028612 Porphyra purpurea chloroplast
83NC_001568TTCC3479384794811 Epifagus virginiana chloroplast
84NC_001675TTCC38439844911 Cyanophora paradoxa cyanelle
85NC_001879TTCC3721247213411 Nicotiana tabacum plastid
86NC_001879TTCC313143713144711 Nicotiana tabacum plastid
87NC_003119TTCC310624210625312 Medicago truncatula chloroplast
88NC_003386TTCC3555095551911 Psilotum nudum chloroplast
89NC_004543TTCC315251715252711 Anthoceros formosae chloroplast
90NC_004561TTCC313206113207111 Atropa belladonna chloroplast
91NC_004766TTCC3879628797312 Adiantum capillus-veneris chloroplast
92NC_004823TTCC360862013 Eimeria tenella strain Penn State apicoplast
93NC_004993TTCC311104211105312 Calycanthus floridus var. glaucus chloroplast
94NC_004993TTCC312173912175012 Calycanthus floridus var. glaucus chloroplast
95NC_004993TTCC313014613015611 Calycanthus floridus var. glaucus chloroplast
96NC_005086TTCC3713107132112 Amborella trichopoda chloroplast
97NC_005086TTCC313735413736411 Amborella trichopoda chloroplast
98NC_005353TTCC31467147711 Chlamydomonas reinhardtii chloroplast
99NC_005353TTCC3830568306611 Chlamydomonas reinhardtii chloroplast
100NC_005353TTCC314735114736111 Chlamydomonas reinhardtii chloroplast
101NC_005353TTCC314782814783811 Chlamydomonas reinhardtii chloroplast
102NC_006050TTCC3704557046612 Nymphaea alba chloroplast
103NC_007144TTCC313095913096911 Cucumis sativus chloroplast
104NC_007407TTCC3701297014113 Acorus calamus plastid
105NC_007407TTCC312920612921611 Acorus calamus plastid
106NC_007500TTCC3721227213211 Nicotiana sylvestris chloroplast
107NC_007500TTCC313143513144511 Nicotiana sylvestris chloroplast
108NC_007602TTCC3719517196111 Nicotiana tomentosiformis chloroplast
109NC_007602TTCC313116513117511 Nicotiana tomentosiformis chloroplast
110NC_007898TTCC313081313082311 Solanum lycopersicum chloroplast
111NC_007932TTCC3311343114512 Porphyra yezoensis chloroplast
112NC_007943TTCC313071313072311 Solanum bulbocastanum chloroplast
113NC_008096TTCC313066613067611 Solanum tuberosum chloroplast
114NC_008326TTCC313446013447011 Liriodendron tulipifera chloroplast
115NC_008335TTCC313691113692111 Platanus occidentalis chloroplast
116NC_008336TTCC313124613125611 Nandina domestica chloroplast
117NC_008372TTCC3650106502011 Stigeoclonium helveticum chloroplast
118NC_008372TTCC3786887869811 Stigeoclonium helveticum chloroplast
119NC_008407TTCC314141114142111 Jasminum nudiflorum chloroplast
120NC_008456TTCC313480913481911 Drimys granadensis chloroplast
121NC_008457TTCC3336303364112 Piper cenocladum chloroplast
122NC_008535TTCC313023413024411 Coffea arabica chloroplast
123NC_008591TTCC3145811459212 Agrostis stolonifera chloroplast
124NC_008788TTCC3708847089512 Nuphar advena chloroplast
125NC_008796TTCC313643313644412 Ranunculus macranthus chloroplast
126NC_009259TTCC310529710530812 Phaseolus vulgaris chloroplast
127NC_009259TTCC312420512421511 Phaseolus vulgaris chloroplast
128NC_009598TTCC3675556756612 Chloranthus spicatus chloroplast
129NC_009598TTCC313276113277111 Chloranthus spicatus chloroplast
130NC_009599TTCC313349113350111 Buxus microphylla chloroplast
131NC_009600TTCC313369313370311 Illicium oligandrum chloroplast
132NC_009601TTCC312729212730211 Dioscorea elephantipes chloroplast
133NC_009808TTCC3720897209911 Ipomoea purpurea chloroplast
134NC_009808TTCC313376313377412 Ipomoea purpurea chloroplast
135NC_009962TTCC313119213120211 Ceratophyllum demersum chloroplast
136NC_009963TTCC3621986220811 Cuscuta exaltata chloroplast
137NC_010093TTCC3698056981713 Acorus americanus chloroplast
138NC_010093TTCC312887612888611 Acorus americanus chloroplast
139NC_010109TTCC314112814113811 Lemna minor chloroplast
140NC_010323TTCC34430444213 Carica papaya chloroplast
141NC_010359TTCC3883278833812 Aneura mirabilis chloroplast
142NC_010654TTCC3553735538412 Welwitschia mirabilis chloroplast
143NC_011163TTCC3620746208512 Cicer arietinum chloroplast
144NC_011713TTCC3717147172411 Festuca arundinacea chloroplast
145NC_012615TTCC313422913423911 Megaleranthis saniculifolia chloroplast
146NC_012903TTCC35778578811 Aureoumbra lagunensis chloroplast
147NC_013703TTCC33596360712 Cryptomonas paramecium plastid
148NC_013823TTCC313556513557511 Typha latifolia chloroplast
149NC_013843TTCC312513012514011 Vigna radiata chloroplast
150NC_013991TTCC313237313238311 Phoenix dactylifera chloroplast
151NC_014056TTCC312078212079211 Oncidium Gower Ramsey chloroplast
152NC_013707TTCC313105513106511 Olea europaea chloroplast