Chloroplast Motifs - Imperfect TTCC Repeats
S.No | Sequence ID | Motif | Iterations | Start | End | Tract Length | Sequence Name |
---|---|---|---|---|---|---|---|
1 | NC_014346 | TTCC | 3 | 240263 | 240273 | 11 | Floydiella terrestris chloroplast |
2 | NC_014348 | TTCC | 3 | 86817 | 86828 | 12 | Pteridium aquilinum subsp. aquilinum chloroplast |
3 | NC_014589 | TTCC | 3 | 17375 | 17386 | 12 | Cathaya argyrophylla chloroplast |
4 | NC_014592 | TTCC | 3 | 143057 | 143069 | 13 | Cheilanthes lindheimeri chloroplast |
5 | NC_014674 | TTCC | 3 | 64408 | 64418 | 11 | Castanea mollissima chloroplast |
6 | NC_014807 | TTCC | 3 | 107336 | 107347 | 12 | Corynocarpus laevigata chloroplast |
7 | NC_014807 | TTCC | 3 | 134382 | 134392 | 11 | Corynocarpus laevigata chloroplast |
8 | NC_015113 | TTCC | 3 | 130030 | 130040 | 11 | Anthriscus cerefolium chloroplast |
9 | NC_015206 | TTCC | 3 | 36143 | 36153 | 11 | Fragaria vesca subsp. vesca chloroplast |
10 | NC_015401 | TTCC | 3 | 131065 | 131075 | 11 | Olea europaea subsp. europaea plastid |
11 | NC_015604 | TTCC | 3 | 131063 | 131073 | 11 | Olea europaea subsp. cuspidata chloroplast |
12 | NC_015605 | TTCC | 3 | 137849 | 137859 | 11 | Nelumbo lutea chloroplast |
13 | NC_015608 | TTCC | 3 | 131158 | 131168 | 11 | Olea woodiana subsp. woodiana chloroplast |
14 | NC_015610 | TTCC | 3 | 137938 | 137948 | 11 | Nelumbo nucifera chloroplast |
15 | NC_015623 | TTCC | 3 | 131086 | 131096 | 11 | Olea europaea subsp. maroccana chloroplast |
16 | NC_015891 | TTCC | 3 | 143282 | 143292 | 11 | Spirodela polyrhiza chloroplast |
17 | NC_015892 | TTCC | 3 | 134294 | 134304 | 11 | Magnolia kwangsiensis chloroplast |
18 | NC_015894 | TTCC | 3 | 78753 | 78764 | 12 | Wolffiella lingulata chloroplast |
19 | NC_015894 | TTCC | 3 | 143963 | 143973 | 11 | Wolffiella lingulata chloroplast |
20 | NC_015899 | TTCC | 3 | 78279 | 78290 | 12 | Wolffia australiana chloroplast |
21 | NC_015899 | TTCC | 3 | 143139 | 143149 | 11 | Wolffia australiana chloroplast |
22 | NC_015983 | TTCC | 3 | 131260 | 131270 | 11 | Cucumis melo subsp. melo chloroplast |
23 | NC_015996 | TTCC | 3 | 46279 | 46290 | 12 | Pyrus pyrifolia chloroplast |
24 | NC_016063 | TTCC | 3 | 62249 | 62260 | 12 | Cephalotaxus wilsoniana chloroplast DNA |
25 | NC_016068 | TTCC | 3 | 72093 | 72103 | 11 | Nicotiana undulata chloroplast |
26 | NC_016068 | TTCC | 3 | 131368 | 131378 | 11 | Nicotiana undulata chloroplast |
27 | NC_016069 | TTCC | 3 | 52085 | 52096 | 12 | Picea morrisonicola chloroplast |
28 | NC_016433 | TTCC | 3 | 70905 | 70915 | 11 | Sesamum indicum chloroplast |
29 | NC_016433 | TTCC | 3 | 129036 | 129046 | 11 | Sesamum indicum chloroplast |
30 | NC_016468 | TTCC | 3 | 128700 | 128710 | 11 | Boea hygrometrica chloroplast |
31 | NC_016468 | TTCC | 3 | 144131 | 144142 | 12 | Boea hygrometrica chloroplast |
32 | NC_016703 | TTCC | 3 | 9476 | 9486 | 11 | Phaeocystis antarctica strain CCMP1374 plastid |
33 | NC_016730 | TTCC | 3 | 62135 | 62147 | 13 | Silene latifolia chloroplast |
34 | NC_016736 | TTCC | 3 | 24195 | 24205 | 11 | Ricinus communis chloroplast |
35 | NC_016753 | TTCC | 3 | 136845 | 136855 | 11 | Colocasia esculenta chloroplast |
36 | NC_016753 | TTCC | 3 | 142808 | 142819 | 12 | Colocasia esculenta chloroplast |
37 | NC_016986 | TTCC | 3 | 85161 | 85173 | 13 | Ginkgo biloba chloroplast |
38 | NC_017006 | TTCC | 3 | 34080 | 34090 | 11 | Mankyua chejuensis chloroplast |
39 | NC_017006 | TTCC | 3 | 50775 | 50787 | 13 | Mankyua chejuensis chloroplast |
40 | NC_017602 | TTCC | 3 | 131083 | 131093 | 11 | Elaeis guineensis chloroplast |
41 | NC_018051 | TTCC | 3 | 125106 | 125116 | 11 | Vigna unguiculata chloroplast |
42 | NC_018117 | TTCC | 3 | 131203 | 131213 | 11 | Datura stramonium chloroplast |
43 | NC_018357 | TTCC | 3 | 134595 | 134605 | 11 | Magnolia denudata chloroplast |
44 | NC_018552 | TTCC | 3 | 131967 | 131977 | 11 | Capsicum annuum chloroplast |
45 | NC_018766 | TTCC | 3 | 36158 | 36168 | 11 | Fragaria vesca subsp. bracteata chloroplast |
46 | NC_018767 | TTCC | 3 | 36143 | 36153 | 11 | Fragaria mandshurica plastid |
47 | NC_019601 | TTCC | 3 | 36097 | 36107 | 11 | Fragaria chiloensis chloroplast |
48 | NC_019602 | TTCC | 3 | 36096 | 36106 | 11 | Fragaria virginiana chloroplast |
49 | NC_019628 | TTCC | 3 | 104598 | 104608 | 11 | Pellia endiviifolia chloroplast |
50 | NC_020092 | TTCC | 3 | 126478 | 126488 | 11 | Chrysanthemum x morifolium chloroplast |
51 | NC_020098 | TTCC | 3 | 129420 | 129430 | 11 | Tectona grandis chloroplast |
52 | NC_020152 | TTCC | 3 | 64385 | 64395 | 11 | Quercus rubra plastid |
53 | NC_020316 | TTCC | 3 | 134738 | 134748 | 11 | Magnolia officinalis chloroplast |
54 | NC_020317 | TTCC | 3 | 134687 | 134697 | 11 | Magnolia officinalis subsp. biloba voucher SC001 chloroplast |
55 | NC_020318 | TTCC | 3 | 134180 | 134190 | 11 | Magnolia grandiflora voucher NJ016 chloroplast |
56 | NC_020320 | TTCC | 3 | 126404 | 126414 | 11 | Chrysanthemum indicum voucher HeN001 chloroplast |
57 | NC_020362 | TTCC | 3 | 136188 | 136198 | 11 | Heliconia collinsiana plastid |
58 | NC_020364 | TTCC | 3 | 131763 | 131773 | 11 | Pseudophoenix vinifera plastid |
59 | NC_020365 | TTCC | 3 | 131382 | 131392 | 11 | Calamus caryotoides plastid |
60 | NC_020366 | TTCC | 3 | 132273 | 132283 | 11 | Bismarckia nobilis plastid |
61 | NC_020367 | TTCC | 3 | 131794 | 131804 | 11 | Dasypogon bromeliifolius plastid |
62 | NC_020431 | TTCC | 3 | 126686 | 126696 | 11 | Salvia miltiorrhiza chloroplast |
63 | NC_020607 | TTCC | 3 | 126503 | 126513 | 11 | Artemisia frigida chloroplast |
64 | NC_021091 | TTCC | 3 | 125550 | 125560 | 11 | Vigna angularis chloroplast DNA |
65 | NC_021110 | TTCC | 3 | 61803 | 61814 | 12 | Cephalotaxus oliveri chloroplast |
66 | NC_021111 | TTCC | 3 | 88516 | 88527 | 12 | Cistanche deserticola chloroplast |
67 | NC_021121 | TTCC | 3 | 131271 | 131281 | 11 | Ardisia polysticta chloroplast |
68 | NC_021189 | TTCC | 3 | 31065 | 31076 | 12 | Pyropia haitanensis voucher PH-38 chloroplast |
69 | NC_021423 | TTCC | 3 | 130161 | 130171 | 11 | Catharanthus roseus cultivar Pacifica Punch Halo chloroplast |
70 | NC_021425 | TTCC | 3 | 135160 | 135170 | 11 | Tetracentron sinense chloroplast |
71 | NC_021426 | TTCC | 3 | 136494 | 136504 | 11 | Trochodendron aralioides chloroplast |
72 | NC_021429 | TTCC | 3 | 126382 | 126394 | 13 | Cymbidium aloifolium voucher KUN:YJB100604 chloroplast |
73 | NC_021433 | TTCC | 3 | 125163 | 125175 | 13 | Cymbidium mannii voucher KUN:YJB100602 chloroplast |
74 | NC_021449 | TTCC | 3 | 127686 | 127696 | 11 | Utricularia gibba chloroplast |
75 | NC_021637 | TTCC | 3 | 9578 | 9588 | 11 | Phaeocystis globosa strain Pg-G(A) chloroplast |
76 | NC_021936 | TTCC | 3 | 104752 | 104763 | 12 | Najas flexilis chloroplast |
77 | NC_021936 | TTCC | 3 | 119663 | 119673 | 11 | Najas flexilis chloroplast |
78 | NC_021936 | TTCC | 3 | 131247 | 131257 | 11 | Najas flexilis chloroplast |
79 | NC_021936 | TTCC | 3 | 137108 | 137118 | 11 | Najas flexilis chloroplast |
80 | NC_022099 | TTCC | 3 | 106242 | 106253 | 12 | Medicago truncatula cultivar Jemalong 2HA plastid |
81 | NC_022100 | TTCC | 3 | 106042 | 106053 | 12 | Medicago truncatula cultivar Borung plastid |
82 | NC_000925 | TTCC | 3 | 130275 | 130286 | 12 | Porphyra purpurea chloroplast |
83 | NC_001568 | TTCC | 3 | 47938 | 47948 | 11 | Epifagus virginiana chloroplast |
84 | NC_001675 | TTCC | 3 | 8439 | 8449 | 11 | Cyanophora paradoxa cyanelle |
85 | NC_001879 | TTCC | 3 | 72124 | 72134 | 11 | Nicotiana tabacum plastid |
86 | NC_001879 | TTCC | 3 | 131437 | 131447 | 11 | Nicotiana tabacum plastid |
87 | NC_003119 | TTCC | 3 | 106242 | 106253 | 12 | Medicago truncatula chloroplast |
88 | NC_003386 | TTCC | 3 | 55509 | 55519 | 11 | Psilotum nudum chloroplast |
89 | NC_004543 | TTCC | 3 | 152517 | 152527 | 11 | Anthoceros formosae chloroplast |
90 | NC_004561 | TTCC | 3 | 132061 | 132071 | 11 | Atropa belladonna chloroplast |
91 | NC_004766 | TTCC | 3 | 87962 | 87973 | 12 | Adiantum capillus-veneris chloroplast |
92 | NC_004823 | TTCC | 3 | 608 | 620 | 13 | Eimeria tenella strain Penn State apicoplast |
93 | NC_004993 | TTCC | 3 | 111042 | 111053 | 12 | Calycanthus floridus var. glaucus chloroplast |
94 | NC_004993 | TTCC | 3 | 121739 | 121750 | 12 | Calycanthus floridus var. glaucus chloroplast |
95 | NC_004993 | TTCC | 3 | 130146 | 130156 | 11 | Calycanthus floridus var. glaucus chloroplast |
96 | NC_005086 | TTCC | 3 | 71310 | 71321 | 12 | Amborella trichopoda chloroplast |
97 | NC_005086 | TTCC | 3 | 137354 | 137364 | 11 | Amborella trichopoda chloroplast |
98 | NC_005353 | TTCC | 3 | 1467 | 1477 | 11 | Chlamydomonas reinhardtii chloroplast |
99 | NC_005353 | TTCC | 3 | 83056 | 83066 | 11 | Chlamydomonas reinhardtii chloroplast |
100 | NC_005353 | TTCC | 3 | 147351 | 147361 | 11 | Chlamydomonas reinhardtii chloroplast |
101 | NC_005353 | TTCC | 3 | 147828 | 147838 | 11 | Chlamydomonas reinhardtii chloroplast |
102 | NC_006050 | TTCC | 3 | 70455 | 70466 | 12 | Nymphaea alba chloroplast |
103 | NC_007144 | TTCC | 3 | 130959 | 130969 | 11 | Cucumis sativus chloroplast |
104 | NC_007407 | TTCC | 3 | 70129 | 70141 | 13 | Acorus calamus plastid |
105 | NC_007407 | TTCC | 3 | 129206 | 129216 | 11 | Acorus calamus plastid |
106 | NC_007500 | TTCC | 3 | 72122 | 72132 | 11 | Nicotiana sylvestris chloroplast |
107 | NC_007500 | TTCC | 3 | 131435 | 131445 | 11 | Nicotiana sylvestris chloroplast |
108 | NC_007602 | TTCC | 3 | 71951 | 71961 | 11 | Nicotiana tomentosiformis chloroplast |
109 | NC_007602 | TTCC | 3 | 131165 | 131175 | 11 | Nicotiana tomentosiformis chloroplast |
110 | NC_007898 | TTCC | 3 | 130813 | 130823 | 11 | Solanum lycopersicum chloroplast |
111 | NC_007932 | TTCC | 3 | 31134 | 31145 | 12 | Porphyra yezoensis chloroplast |
112 | NC_007943 | TTCC | 3 | 130713 | 130723 | 11 | Solanum bulbocastanum chloroplast |
113 | NC_008096 | TTCC | 3 | 130666 | 130676 | 11 | Solanum tuberosum chloroplast |
114 | NC_008326 | TTCC | 3 | 134460 | 134470 | 11 | Liriodendron tulipifera chloroplast |
115 | NC_008335 | TTCC | 3 | 136911 | 136921 | 11 | Platanus occidentalis chloroplast |
116 | NC_008336 | TTCC | 3 | 131246 | 131256 | 11 | Nandina domestica chloroplast |
117 | NC_008372 | TTCC | 3 | 65010 | 65020 | 11 | Stigeoclonium helveticum chloroplast |
118 | NC_008372 | TTCC | 3 | 78688 | 78698 | 11 | Stigeoclonium helveticum chloroplast |
119 | NC_008407 | TTCC | 3 | 141411 | 141421 | 11 | Jasminum nudiflorum chloroplast |
120 | NC_008456 | TTCC | 3 | 134809 | 134819 | 11 | Drimys granadensis chloroplast |
121 | NC_008457 | TTCC | 3 | 33630 | 33641 | 12 | Piper cenocladum chloroplast |
122 | NC_008535 | TTCC | 3 | 130234 | 130244 | 11 | Coffea arabica chloroplast |
123 | NC_008591 | TTCC | 3 | 14581 | 14592 | 12 | Agrostis stolonifera chloroplast |
124 | NC_008788 | TTCC | 3 | 70884 | 70895 | 12 | Nuphar advena chloroplast |
125 | NC_008796 | TTCC | 3 | 136433 | 136444 | 12 | Ranunculus macranthus chloroplast |
126 | NC_009259 | TTCC | 3 | 105297 | 105308 | 12 | Phaseolus vulgaris chloroplast |
127 | NC_009259 | TTCC | 3 | 124205 | 124215 | 11 | Phaseolus vulgaris chloroplast |
128 | NC_009598 | TTCC | 3 | 67555 | 67566 | 12 | Chloranthus spicatus chloroplast |
129 | NC_009598 | TTCC | 3 | 132761 | 132771 | 11 | Chloranthus spicatus chloroplast |
130 | NC_009599 | TTCC | 3 | 133491 | 133501 | 11 | Buxus microphylla chloroplast |
131 | NC_009600 | TTCC | 3 | 133693 | 133703 | 11 | Illicium oligandrum chloroplast |
132 | NC_009601 | TTCC | 3 | 127292 | 127302 | 11 | Dioscorea elephantipes chloroplast |
133 | NC_009808 | TTCC | 3 | 72089 | 72099 | 11 | Ipomoea purpurea chloroplast |
134 | NC_009808 | TTCC | 3 | 133763 | 133774 | 12 | Ipomoea purpurea chloroplast |
135 | NC_009962 | TTCC | 3 | 131192 | 131202 | 11 | Ceratophyllum demersum chloroplast |
136 | NC_009963 | TTCC | 3 | 62198 | 62208 | 11 | Cuscuta exaltata chloroplast |
137 | NC_010093 | TTCC | 3 | 69805 | 69817 | 13 | Acorus americanus chloroplast |
138 | NC_010093 | TTCC | 3 | 128876 | 128886 | 11 | Acorus americanus chloroplast |
139 | NC_010109 | TTCC | 3 | 141128 | 141138 | 11 | Lemna minor chloroplast |
140 | NC_010323 | TTCC | 3 | 4430 | 4442 | 13 | Carica papaya chloroplast |
141 | NC_010359 | TTCC | 3 | 88327 | 88338 | 12 | Aneura mirabilis chloroplast |
142 | NC_010654 | TTCC | 3 | 55373 | 55384 | 12 | Welwitschia mirabilis chloroplast |
143 | NC_011163 | TTCC | 3 | 62074 | 62085 | 12 | Cicer arietinum chloroplast |
144 | NC_011713 | TTCC | 3 | 71714 | 71724 | 11 | Festuca arundinacea chloroplast |
145 | NC_012615 | TTCC | 3 | 134229 | 134239 | 11 | Megaleranthis saniculifolia chloroplast |
146 | NC_012903 | TTCC | 3 | 5778 | 5788 | 11 | Aureoumbra lagunensis chloroplast |
147 | NC_013703 | TTCC | 3 | 3596 | 3607 | 12 | Cryptomonas paramecium plastid |
148 | NC_013823 | TTCC | 3 | 135565 | 135575 | 11 | Typha latifolia chloroplast |
149 | NC_013843 | TTCC | 3 | 125130 | 125140 | 11 | Vigna radiata chloroplast |
150 | NC_013991 | TTCC | 3 | 132373 | 132383 | 11 | Phoenix dactylifera chloroplast |
151 | NC_014056 | TTCC | 3 | 120782 | 120792 | 11 | Oncidium Gower Ramsey chloroplast |
152 | NC_013707 | TTCC | 3 | 131055 | 131065 | 11 | Olea europaea chloroplast |