ChloroMitoSSRDB 2.0 - Database of Microsatellites from Chloroplast & Mitochondrial Genomes

Chloroplast Motifs - Imperfect CAT Repeats

S.No	Sequence ID	Motif	Iterations	Start	End	Tract Length	Sequence Name
1	NC_014808	CAT	7	32164	32184	21	Thalassiosira oceanica CCMP1005 chloroplast
2	NC_014582	CAT	5	77039	77053	15	Monsonia speciosa plastid
3	NC_016703	CAT	5	74837	74850	14	Phaeocystis antarctica strain CCMP1374 plastid
4	NC_020367	CAT	5	32962	32975	14	Dasypogon bromeliifolius plastid
5	NC_011087	CAT	4	451545	451556	12	Paulinella chromatophora chromatophore
6	NC_011087	CAT	4	882812	882823	12	Paulinella chromatophora chromatophore
7	NC_014267	CAT	4	97118	97129	12	Kryptoperidinium foliaceum chloroplast
8	NC_014287	CAT	4	57593	57604	12	Durinskia baltica chloroplast
9	NC_014575	CAT	4	89959	89969	11	Cedrus deodara chloroplast
10	NC_014589	CAT	4	49561	49571	11	Cathaya argyrophylla chloroplast
11	NC_014699	CAT	4	10632	10643	12	Equisetum arvense chloroplast
12	NC_014874	CAT	4	25139	25149	11	Rhizanthella gardneri plastid
13	NC_014874	CAT	4	53708	53718	11	Rhizanthella gardneri plastid
14	NC_015830	CAT	4	74218	74229	12	Bambusa emeiensis chloroplast
15	NC_015892	CAT	4	6603	6614	12	Magnolia kwangsiensis chloroplast
16	NC_015983	CAT	4	72203	72214	12	Cucumis melo subsp. melo chloroplast
17	NC_016058	CAT	4	102548	102558	11	Larix decidua chloroplast
18	NC_016064	CAT	4	104444	104455	12	Pseudotsuga sinensis var. wilsoniana chloroplast
19	NC_016065	CAT	4	12715	12725	11	Taiwania cryptomerioides chloroplast DNA
20	NC_016471	CAT	4	2798	2809	12	Neottia nidus-avis plastid
21	NC_016703	CAT	4	45834	45844	11	Phaeocystis antarctica strain CCMP1374 plastid
22	NC_016703	CAT	4	58629	58639	11	Phaeocystis antarctica strain CCMP1374 plastid
23	NC_016703	CAT	4	65825	65835	11	Phaeocystis antarctica strain CCMP1374 plastid
24	NC_016708	CAT	4	22480	22490	11	Millettia pinnata chloroplast
25	NC_016708	CAT	4	40606	40617	12	Millettia pinnata chloroplast
26	NC_016728	CAT	4	84039	84051	13	Silene noctiflora chloroplast
27	NC_016729	CAT	4	101898	101908	11	Silene conica chloroplast
28	NC_016729	CAT	4	101957	101967	11	Silene conica chloroplast
29	NC_016731	CAT	4	927	937	11	Synedra acus chloroplast
30	NC_016731	CAT	4	84331	84342	12	Synedra acus chloroplast
31	NC_016732	CAT	4	152735	152746	12	Dunaliella salina chloroplast
32	NC_018357	CAT	4	6605	6616	12	Magnolia denudata chloroplast
33	NC_018523	CAT	4	28506	28517	12	Saccharina japonica chloroplast
34	NC_018569	CAT	4	67815	67826	12	Trebouxiophyceae sp. MX-AZ01 chloroplast
35	NC_018569	CAT	4	130646	130656	11	Trebouxiophyceae sp. MX-AZ01 chloroplast
36	NC_019616	CAT	4	146555	146565	11	Vaccinium macrocarpon plastid
37	NC_019628	CAT	4	4162	4172	11	Pellia endiviifolia chloroplast
38	NC_020146	CAT	4	26191	26202	12	Equisetum hyemale chloroplast
39	NC_020317	CAT	4	6656	6667	12	Magnolia officinalis subsp. biloba voucher SC001 chloroplast
40	NC_020318	CAT	4	6609	6620	12	Magnolia grandiflora voucher NJ016 chloroplast
41	NC_020319	CAT	4	72520	72530	11	Cycas revoluta chloroplast
42	NC_020319	CAT	4	92288	92299	12	Cycas revoluta chloroplast
43	NC_020361	CAT	4	37406	37416	11	Podocarpus totara chloroplast
44	NC_020431	CAT	4	78092	78102	11	Salvia miltiorrhiza chloroplast
45	NC_020460	CAT	4	17262	17273	12	Euglena viridis culture-collection ATCC:PRA110 chloroplast
46	NC_020460	CAT	4	34439	34449	11	Euglena viridis culture-collection ATCC:PRA110 chloroplast
47	NC_021075	CAT	4	36460	36471	12	Calliarthron tuberculosum chloroplast
48	NC_021075	CAT	4	45191	45202	12	Calliarthron tuberculosum chloroplast
49	NC_021075	CAT	4	111023	111033	11	Calliarthron tuberculosum chloroplast
50	NC_021111	CAT	4	46440	46451	12	Cistanche deserticola chloroplast
51	NC_021189	CAT	4	149837	149847	11	Pyropia haitanensis voucher PH-38 chloroplast
52	NC_021372	CAT	4	50803	50813	11	Pharus latifolius chloroplast
53	NC_021429	CAT	4	129814	129824	11	Cymbidium aloifolium voucher KUN:YJB100604 chloroplast
54	NC_021430	CAT	4	128478	128488	11	Cymbidium sinense voucher KUN:YJB100605 chloroplast
55	NC_021431	CAT	4	128565	128575	11	Cymbidium tortisepalum voucher KUN:HJL091027 chloroplast
56	NC_021432	CAT	4	129207	129217	11	Cymbidium tracyanum voucher KUN:YJB100606 chloroplast
57	NC_021433	CAT	4	128607	128617	11	Cymbidium mannii voucher KUN:YJB100602 chloroplast
58	NC_021438	CAT	4	114890	114900	11	Gnetum montanum chloroplast
59	NC_021439	CAT	4	20331	20341	11	Pinus massoniana chloroplast
60	NC_021440	CAT	4	21125	21135	11	Pinus taeda chloroplast
61	NC_021441	CAT	4	12717	12727	11	Taiwania flousiana chloroplast
62	NC_021636	CAT	4	41302	41313	12	Glycine tomentella voucher CSIRO:G1403 chloroplast
63	NC_021637	CAT	4	59907	59917	11	Phaeocystis globosa strain Pg-G(A) chloroplast
64	NC_021637	CAT	4	67989	67999	11	Phaeocystis globosa strain Pg-G(A) chloroplast
65	NC_021645	CAT	4	41153	41164	12	Glycine cyrtoloba voucher CSIRO:G1267 chloroplast
66	NC_021646	CAT	4	41340	41351	12	Glycine stenophita voucher CSIRO:G1974 chloroplast
67	NC_021647	CAT	4	41292	41303	12	Glycine canescens voucher CSIRO:G1232 chloroplast
68	NC_021648	CAT	4	41323	41334	12	Glycine dolichocarpa voucher CSIRO:G1134 chloroplast
69	NC_021649	CAT	4	41448	41459	12	Glycine falcata voucher CSIRO:G1718 chloroplast
70	NC_021650	CAT	4	41333	41344	12	Glycine syndetika voucher CSIRO:G1300 chloroplast
71	NC_022099	CAT	4	70439	70449	11	Medicago truncatula cultivar Jemalong 2HA plastid
72	NC_022100	CAT	4	70272	70282	11	Medicago truncatula cultivar Borung plastid
73	NC_000925	CAT	4	74457	74468	12	Porphyra purpurea chloroplast
74	NC_000927	CAT	4	9932	9942	11	Nephroselmis olivacea chloroplast
75	NC_001603	CAT	4	38251	38261	11	Euglena gracilis chloroplast
76	NC_001603	CAT	4	41913	41923	11	Euglena gracilis chloroplast
77	NC_001631	CAT	4	20259	20269	11	Pinus thunbergii chloroplast
78	NC_001840	CAT	4	20546	20556	11	Cyanidium caldarium chloroplast
79	NC_001840	CAT	4	28651	28661	11	Cyanidium caldarium chloroplast
80	NC_001840	CAT	4	164513	164523	11	Cyanidium caldarium chloroplast
81	NC_002186	CAT	4	49924	49934	11	Mesostigma viride chloroplast
82	NC_002694	CAT	4	19891	19901	11	Lotus japonicus chloroplast
83	NC_002694	CAT	4	40883	40894	12	Lotus japonicus chloroplast
84	NC_003119	CAT	4	70439	70449	11	Medicago truncatula chloroplast
85	NC_004677	CAT	4	20016	20026	11	Pinus koraiensis chloroplast
86	NC_004677	CAT	4	73199	73209	11	Pinus koraiensis chloroplast
87	NC_004799	CAT	4	72438	72448	11	Cyanidioschyzon merolae strain 10D chloroplast
88	NC_004799	CAT	4	89415	89425	11	Cyanidioschyzon merolae strain 10D chloroplast
89	NC_005087	CAT	4	36632	36642	11	Physcomitrella patens subsp. patens chloroplast
90	NC_006050	CAT	4	104211	104222	12	Nymphaea alba chloroplast
91	NC_006137	CAT	4	6260	6271	12	Gracilaria tenuistipitata var. liui chloroplast
92	NC_006137	CAT	4	54004	54014	11	Gracilaria tenuistipitata var. liui chloroplast
93	NC_006861	CAT	4	23841	23851	11	Huperzia lucidula chloroplast
94	NC_007144	CAT	4	72701	72712	12	Cucumis sativus chloroplast
95	NC_007942	CAT	4	40821	40832	12	Glycine max chloroplast
96	NC_008097	CAT	4	113428	113438	11	Chara vulgaris chloroplast
97	NC_008114	CAT	4	113782	113792	11	Pseudendoclonium akinetum chloroplast
98	NC_008117	CAT	4	44103	44113	11	Zygnema circumcarinatum chloroplast
99	NC_008326	CAT	4	6654	6665	12	Liriodendron tulipifera chloroplast
100	NC_008454	CAT	4	179787	179797	11	Pelargonium x hortorum chloroplast
101	NC_008456	CAT	4	6601	6612	12	Drimys granadensis chloroplast
102	NC_008456	CAT	4	33370	33380	11	Drimys granadensis chloroplast
103	NC_008788	CAT	4	104820	104831	12	Nuphar advena chloroplast
104	NC_009266	CAT	4	46544	46555	12	Aethionema grandiflorum chloroplast
105	NC_009573	CAT	4	28690	28700	11	Rhodomonas salina chloroplast
106	NC_009598	CAT	4	6712	6722	11	Chloranthus spicatus chloroplast
107	NC_009808	CAT	4	73446	73456	11	Ipomoea purpurea chloroplast
108	NC_009949	CAT	4	69940	69951	12	Cuscuta obtusiflora chloroplast
109	NC_010359	CAT	4	48364	48374	11	Aneura mirabilis chloroplast
110	NC_010654	CAT	4	3077	3088	12	Welwitschia mirabilis chloroplast
111	NC_010772	CAT	4	119321	119332	12	Heterosigma akashiwo chloroplast
112	NC_010776	CAT	4	17390	17400	11	Fagopyrum esculentum subsp. ancestrale chloroplast
113	NC_011031	CAT	4	156268	156279	12	Oedogonium cardiacum chloroplast
114	NC_011152	CAT	4	20271	20281	11	Picea sitchensis chloroplast
115	NC_011153	CAT	4	20331	20341	11	Pinus contorta chloroplast
116	NC_011154	CAT	4	20076	20086	11	Pinus gerardiana chloroplast
117	NC_011154	CAT	4	74039	74049	11	Pinus gerardiana chloroplast
118	NC_011155	CAT	4	19997	20007	11	Pinus krempfii chloroplast
119	NC_011155	CAT	4	73854	73864	11	Pinus krempfii chloroplast
120	NC_011156	CAT	4	20105	20115	11	Pinus lambertiana chloroplast
121	NC_011156	CAT	4	73345	73355	11	Pinus lambertiana chloroplast
122	NC_011158	CAT	4	19865	19875	11	Pinus monophylla chloroplast
123	NC_011159	CAT	4	19826	19836	11	Pinus nelsonii chloroplast
124	NC_011163	CAT	4	19901	19911	11	Cicer arietinum chloroplast
125	NC_011600	CAT	4	84399	84410	12	Vaucheria litorea chloroplast
126	NC_011828	CAT	4	121541	121552	12	Trifolium subterraneum chloroplast
127	NC_011930	CAT	4	61126	61136	11	Keteleeria davidiana chloroplast
128	NC_011942	CAT	4	57292	57302	11	Gnetum parvifolium chloroplast
129	NC_012052	CAT	4	37277	37287	11	Syntrichia ruralis chloroplast
130	NC_012568	CAT	4	40152	40164	13	Micromonas pusilla CCMP1545 chloroplast
131	NC_012615	CAT	4	6692	6703	12	Megaleranthis saniculifolia chloroplast
132	NC_012903	CAT	4	37612	37622	11	Aureoumbra lagunensis chloroplast
133	NC_012927	CAT	4	74116	74127	12	Bambusa oldhamii chloroplast
134	NC_013086	CAT	4	67271	67281	11	Selaginella moellendorffii plastid
135	NC_013086	CAT	4	74082	74093	12	Selaginella moellendorffii plastid
136	NC_013498	CAT	4	34075	34086	12	Ectocarpus siliculosus chloroplast
137	NC_013823	CAT	4	72869	72879	11	Typha latifolia chloroplast
138	NC_014057	CAT	4	110946	110957	12	Pisum sativum chloroplast
139	NC_014063	CAT	4	19037	19047	11	Lathyrus sativus chloroplast

ChloroMitoSSRDB 2.0 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

Chloroplast Motifs - Imperfect CAT Repeats