Chloroplast Motifs - Imperfect TCA Repeats
| S.No | Sequence ID | Motif | Iterations | Start | End | Tract Length | Sequence Name |
| 1 | NC_020371 | TCA | 11 | 28236 | 28268 | 33 | Pavlova lutheri chloroplast |
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| 2 | NC_008407 | TCA | 8 | 139457 | 139480 | 24 | Jasminum nudiflorum chloroplast |
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| 3 | NC_015605 | TCA | 5 | 67319 | 67332 | 14 | Nelumbo lutea chloroplast |
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| 4 | NC_015610 | TCA | 5 | 67385 | 67398 | 14 | Nelumbo nucifera chloroplast |
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| 5 | NC_000926 | TCA | 5 | 73452 | 73469 | 18 | Guillardia theta chloroplast |
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| 6 | NC_007407 | TCA | 5 | 92300 | 92313 | 14 | Acorus calamus plastid |
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| 7 | NC_007932 | TCA | 5 | 62593 | 62607 | 15 | Porphyra yezoensis chloroplast |
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| 8 | NC_008335 | TCA | 5 | 67989 | 68002 | 14 | Platanus occidentalis chloroplast |
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| 9 | NC_010093 | TCA | 5 | 91975 | 91988 | 14 | Acorus americanus chloroplast |
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| 10 | NC_012575 | TCA | 5 | 53491 | 53505 | 15 | Micromonas sp. RCC299 chloroplast |
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| 11 | NC_011087 | TCA | 4 | 81325 | 81335 | 11 | Paulinella chromatophora chromatophore |
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| 12 | NC_011087 | TCA | 4 | 88247 | 88258 | 12 | Paulinella chromatophora chromatophore |
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| 13 | NC_011087 | TCA | 4 | 179905 | 179916 | 12 | Paulinella chromatophora chromatophore |
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| 14 | NC_011087 | TCA | 4 | 271781 | 271791 | 11 | Paulinella chromatophora chromatophore |
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| 15 | NC_011087 | TCA | 4 | 630759 | 630770 | 12 | Paulinella chromatophora chromatophore |
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| 16 | NC_011087 | TCA | 4 | 779142 | 779152 | 11 | Paulinella chromatophora chromatophore |
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| 17 | NC_011087 | TCA | 4 | 927640 | 927650 | 11 | Paulinella chromatophora chromatophore |
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| 18 | NC_014267 | TCA | 4 | 121158 | 121169 | 12 | Kryptoperidinium foliaceum chloroplast |
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| 19 | NC_014570 | TCA | 4 | 118896 | 118906 | 11 | Eucalyptus grandis chloroplast |
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| 20 | NC_014675 | TCA | 4 | 24058 | 24068 | 11 | Isoetes flaccida chloroplast |
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| 21 | NC_014675 | TCA | 4 | 110419 | 110431 | 13 | Isoetes flaccida chloroplast |
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| 22 | NC_014697 | TCA | 4 | 26210 | 26220 | 11 | Prunus persica chloroplast |
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| 23 | NC_014808 | TCA | 4 | 94001 | 94011 | 11 | Thalassiosira oceanica CCMP1005 chloroplast |
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| 24 | NC_014874 | TCA | 4 | 53016 | 53027 | 12 | Rhizanthella gardneri plastid |
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| 25 | NC_015084 | TCA | 4 | 22656 | 22666 | 11 | Coccomyxa sp. C-169 plastid |
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| 26 | NC_015139 | TCA | 4 | 7617 | 7627 | 11 | Brassica rapa subsp. pekinensis chloroplast |
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| 27 | NC_015139 | TCA | 4 | 25032 | 25042 | 11 | Brassica rapa subsp. pekinensis chloroplast |
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| 28 | NC_015308 | TCA | 4 | 136281 | 136291 | 11 | Hevea brasiliensis chloroplast |
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| 29 | NC_015403 | TCA | 4 | 25759 | 25770 | 12 | Fistulifera sp. JPCC DA0580 chloroplast |
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| 30 | NC_015605 | TCA | 4 | 136136 | 136146 | 11 | Nelumbo lutea chloroplast |
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| 31 | NC_015610 | TCA | 4 | 136225 | 136235 | 11 | Nelumbo nucifera chloroplast |
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| 32 | NC_015894 | TCA | 4 | 27579 | 27589 | 11 | Wolffiella lingulata chloroplast |
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| 33 | NC_015990 | TCA | 4 | 68761 | 68772 | 12 | Panicum virgatum chloroplast |
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| 34 | NC_016058 | TCA | 4 | 61959 | 61969 | 11 | Larix decidua chloroplast |
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| 35 | NC_016064 | TCA | 4 | 93956 | 93966 | 11 | Pseudotsuga sinensis var. wilsoniana chloroplast |
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| 36 | NC_016471 | TCA | 4 | 83691 | 83703 | 13 | Neottia nidus-avis plastid |
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| 37 | NC_016727 | TCA | 4 | 24822 | 24832 | 11 | Silene vulgaris chloroplast |
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| 38 | NC_016728 | TCA | 4 | 24079 | 24089 | 11 | Silene noctiflora chloroplast |
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| 39 | NC_016729 | TCA | 4 | 23400 | 23410 | 11 | Silene conica chloroplast |
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| 40 | NC_016730 | TCA | 4 | 24890 | 24900 | 11 | Silene latifolia chloroplast |
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| 41 | NC_016732 | TCA | 4 | 90676 | 90686 | 11 | Dunaliella salina chloroplast |
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| 42 | NC_016732 | TCA | 4 | 234065 | 234076 | 12 | Dunaliella salina chloroplast |
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| 43 | NC_016734 | TCA | 4 | 7607 | 7617 | 11 | Brassica napus chloroplast |
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| 44 | NC_016734 | TCA | 4 | 25040 | 25050 | 11 | Brassica napus chloroplast |
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| 45 | NC_016734 | TCA | 4 | 29588 | 29599 | 12 | Brassica napus chloroplast |
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| 46 | NC_016736 | TCA | 4 | 137512 | 137522 | 11 | Ricinus communis chloroplast |
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| 47 | NC_017609 | TCA | 4 | 121679 | 121689 | 11 | Phalaenopsis equestris chloroplast |
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| 48 | NC_018114 | TCA | 4 | 135999 | 136011 | 13 | Erycina pusilla chloroplast |
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| 49 | NC_018523 | TCA | 4 | 108612 | 108623 | 12 | Saccharina japonica chloroplast |
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| 50 | NC_018541 | TCA | 4 | 125298 | 125309 | 12 | Elodea canadensis chloroplast |
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| 51 | NC_018565 | TCA | 4 | 25309 | 25319 | 11 | Pachycladon enysii chloroplast |
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| 52 | NC_018569 | TCA | 4 | 66195 | 66206 | 12 | Trebouxiophyceae sp. MX-AZ01 chloroplast |
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| 53 | NC_018569 | TCA | 4 | 121220 | 121231 | 12 | Trebouxiophyceae sp. MX-AZ01 chloroplast |
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| 54 | NC_019616 | TCA | 4 | 79598 | 79608 | 11 | Vaccinium macrocarpon plastid |
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| 55 | NC_020014 | TCA | 4 | 20350 | 20361 | 12 | Nannochloropsis gaditana chloroplast |
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| 56 | NC_020019 | TCA | 4 | 26921 | 26931 | 11 | Camellia sinensis chloroplast |
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| 57 | NC_020146 | TCA | 4 | 52651 | 52661 | 11 | Equisetum hyemale chloroplast |
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| 58 | NC_020321 | TCA | 4 | 34975 | 34985 | 11 | Taxus mairei voucher NN014 chloroplast |
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| 59 | NC_020321 | TCA | 4 | 111967 | 111978 | 12 | Taxus mairei voucher NN014 chloroplast |
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| 60 | NC_020363 | TCA | 4 | 26675 | 26685 | 11 | Zingiber spectabile plastid |
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| 61 | NC_020363 | TCA | 4 | 63860 | 63870 | 11 | Zingiber spectabile plastid |
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| 62 | NC_020363 | TCA | 4 | 149083 | 149094 | 12 | Zingiber spectabile plastid |
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| 63 | NC_020438 | TCA | 4 | 8233 | 8243 | 11 | Gonium pectorale chloroplast |
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| 64 | NC_020795 | TCA | 4 | 35820 | 35831 | 12 | Chondrus crispus plastid complete genome |
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| 65 | NC_020795 | TCA | 4 | 68565 | 68576 | 12 | Chondrus crispus plastid complete genome |
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| 66 | NC_021102 | TCA | 4 | 25286 | 25296 | 11 | Pachycladon cheesemanii chloroplast |
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| 67 | NC_021111 | TCA | 4 | 45143 | 45154 | 12 | Cistanche deserticola chloroplast |
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| 68 | NC_021189 | TCA | 4 | 62567 | 62578 | 12 | Pyropia haitanensis voucher PH-38 chloroplast |
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| 69 | NC_021189 | TCA | 4 | 87320 | 87331 | 12 | Pyropia haitanensis voucher PH-38 chloroplast |
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| 70 | NC_021189 | TCA | 4 | 110333 | 110344 | 12 | Pyropia haitanensis voucher PH-38 chloroplast |
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| 71 | NC_021189 | TCA | 4 | 120076 | 120086 | 11 | Pyropia haitanensis voucher PH-38 chloroplast |
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| 72 | NC_021439 | TCA | 4 | 92394 | 92404 | 11 | Pinus massoniana chloroplast |
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| 73 | NC_021440 | TCA | 4 | 93126 | 93136 | 11 | Pinus taeda chloroplast |
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| 74 | NC_021440 | TCA | 4 | 110822 | 110832 | 11 | Pinus taeda chloroplast |
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| 75 | NC_021618 | TCA | 4 | 37299 | 37310 | 12 | Grateloupia taiwanensis plastid |
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| 76 | NC_000925 | TCA | 4 | 118024 | 118034 | 11 | Porphyra purpurea chloroplast |
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| 77 | NC_000925 | TCA | 4 | 147376 | 147387 | 12 | Porphyra purpurea chloroplast |
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| 78 | NC_000926 | TCA | 4 | 16900 | 16911 | 12 | Guillardia theta chloroplast |
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| 79 | NC_000926 | TCA | 4 | 30563 | 30574 | 12 | Guillardia theta chloroplast |
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| 80 | NC_000927 | TCA | 4 | 3295 | 3306 | 12 | Nephroselmis olivacea chloroplast |
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| 81 | NC_000927 | TCA | 4 | 183821 | 183831 | 11 | Nephroselmis olivacea chloroplast |
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| 82 | NC_000932 | TCA | 4 | 25411 | 25421 | 11 | Arabidopsis thaliana chloroplast |
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| 83 | NC_001319 | TCA | 4 | 44817 | 44827 | 11 | Marchantia polymorpha chloroplast |
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| 84 | NC_001568 | TCA | 4 | 62955 | 62966 | 12 | Epifagus virginiana chloroplast |
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| 85 | NC_001631 | TCA | 4 | 92382 | 92392 | 11 | Pinus thunbergii chloroplast |
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| 86 | NC_001631 | TCA | 4 | 109028 | 109038 | 11 | Pinus thunbergii chloroplast |
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| 87 | NC_001666 | TCA | 4 | 69473 | 69484 | 12 | Zea mays chloroplast |
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| 88 | NC_001675 | TCA | 4 | 9197 | 9208 | 12 | Cyanophora paradoxa cyanelle |
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| 89 | NC_001713 | TCA | 4 | 23438 | 23449 | 12 | Odontella sinensis chloroplast |
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| 90 | NC_001840 | TCA | 4 | 126283 | 126295 | 13 | Cyanidium caldarium chloroplast |
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| 91 | NC_002186 | TCA | 4 | 29424 | 29435 | 12 | Mesostigma viride chloroplast |
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| 92 | NC_002202 | TCA | 4 | 24700 | 24710 | 11 | Spinacia oleracea plastid |
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| 93 | NC_002202 | TCA | 4 | 125803 | 125813 | 11 | Spinacia oleracea plastid |
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| 94 | NC_002693 | TCA | 4 | 129930 | 129941 | 12 | Oenothera elata subsp. hookeri plastid plastome I |
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| 95 | NC_003386 | TCA | 4 | 99240 | 99252 | 13 | Psilotum nudum chloroplast |
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| 96 | NC_004677 | TCA | 4 | 90776 | 90786 | 11 | Pinus koraiensis chloroplast |
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| 97 | NC_005086 | TCA | 4 | 156019 | 156031 | 13 | Amborella trichopoda chloroplast |
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| 98 | NC_005878 | TCA | 4 | 131721 | 131732 | 12 | Saccharum hybrid cultivar SP-80-3280 chloroplast |
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| 99 | NC_006050 | TCA | 4 | 152796 | 152807 | 12 | Nymphaea alba chloroplast |
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| 100 | NC_006050 | TCA | 4 | 153327 | 153339 | 13 | Nymphaea alba chloroplast |
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| 101 | NC_006084 | TCA | 4 | 70095 | 70106 | 12 | Saccharum hybrid cultivar NCo 310 chloroplast |
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| 102 | NC_006861 | TCA | 4 | 68402 | 68413 | 12 | Huperzia lucidula chloroplast |
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| 103 | NC_007407 | TCA | 4 | 127825 | 127835 | 11 | Acorus calamus plastid |
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| 104 | NC_007499 | TCA | 4 | 121767 | 121777 | 11 | Phalaenopsis aphrodite subsp. formosana chloroplast |
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| 105 | NC_007932 | TCA | 4 | 87410 | 87421 | 12 | Porphyra yezoensis chloroplast |
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| 106 | NC_007932 | TCA | 4 | 119168 | 119178 | 11 | Porphyra yezoensis chloroplast |
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| 107 | NC_008100 | TCA | 4 | 13095 | 13105 | 11 | Helicosporidium sp. ex Simulium jonesii plastid |
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| 108 | NC_008115 | TCA | 4 | 119051 | 119061 | 11 | Eucalyptus globulus subsp. globulus chloroplast |
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| 109 | NC_008116 | TCA | 4 | 125244 | 125254 | 11 | Staurastrum punctulatum chloroplast |
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| 110 | NC_008335 | TCA | 4 | 7354 | 7364 | 11 | Platanus occidentalis chloroplast |
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| 111 | NC_008588 | TCA | 4 | 100828 | 100839 | 12 | Phaeodactylum tricornutum chloroplast |
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| 112 | NC_008589 | TCA | 4 | 61283 | 61294 | 12 | Thalassiosira pseudonana chloroplast |
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| 113 | NC_008602 | TCA | 4 | 70294 | 70305 | 12 | Sorghum bicolor chloroplast |
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| 114 | NC_008788 | TCA | 4 | 43128 | 43138 | 11 | Nuphar advena chloroplast |
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| 115 | NC_008788 | TCA | 4 | 154035 | 154047 | 13 | Nuphar advena chloroplast |
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| 116 | NC_008822 | TCA | 4 | 150024 | 150035 | 12 | Chlorokybus atmophyticus chloroplast |
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| 117 | NC_008829 | TCA | 4 | 47028 | 47038 | 11 | Angiopteris evecta chloroplast |
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| 118 | NC_009265 | TCA | 4 | 25140 | 25150 | 11 | Aethionema cordifolium chloroplast |
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| 119 | NC_009266 | TCA | 4 | 25182 | 25192 | 11 | Aethionema grandiflorum chloroplast |
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| 120 | NC_009267 | TCA | 4 | 25319 | 25329 | 11 | Olimarabidopsis pumila chloroplast |
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| 121 | NC_009268 | TCA | 4 | 25501 | 25511 | 11 | Arabis hirsuta chloroplast |
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| 122 | NC_009269 | TCA | 4 | 25369 | 25379 | 11 | Barbarea verna chloroplast |
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| 123 | NC_009270 | TCA | 4 | 25236 | 25246 | 11 | Capsella bursa-pastoris chloroplast |
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| 124 | NC_009271 | TCA | 4 | 25201 | 25211 | 11 | Crucihimalaya wallichii chloroplast |
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| 125 | NC_009272 | TCA | 4 | 24761 | 24771 | 11 | Draba nemorosa chloroplast |
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| 126 | NC_009273 | TCA | 4 | 25205 | 25215 | 11 | Lepidium virginicum chloroplast |
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| 127 | NC_009273 | TCA | 4 | 81630 | 81640 | 11 | Lepidium virginicum chloroplast |
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| 128 | NC_009274 | TCA | 4 | 24589 | 24599 | 11 | Lobularia maritima chloroplast |
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| 129 | NC_009275 | TCA | 4 | 25524 | 25534 | 11 | Nasturtium officinale chloroplast |
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| 130 | NC_009573 | TCA | 4 | 34399 | 34410 | 12 | Rhodomonas salina chloroplast |
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| 131 | NC_009573 | TCA | 4 | 66669 | 66680 | 12 | Rhodomonas salina chloroplast |
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| 132 | NC_009598 | TCA | 4 | 6309 | 6320 | 12 | Chloranthus spicatus chloroplast |
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| 133 | NC_009601 | TCA | 4 | 145754 | 145765 | 12 | Dioscorea elephantipes chloroplast |
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| 134 | NC_009681 | TCA | 4 | 104131 | 104142 | 12 | Leptosira terrestris chloroplast |
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| 135 | NC_009681 | TCA | 4 | 181097 | 181108 | 12 | Leptosira terrestris chloroplast |
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| 136 | NC_009765 | TCA | 4 | 72042 | 72052 | 11 | Cuscuta gronovii chloroplast |
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| 137 | NC_010093 | TCA | 4 | 127495 | 127505 | 11 | Acorus americanus chloroplast |
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| 138 | NC_010359 | TCA | 4 | 44162 | 44172 | 11 | Aneura mirabilis chloroplast |
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| 139 | NC_010359 | TCA | 4 | 87937 | 87948 | 12 | Aneura mirabilis chloroplast |
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| 140 | NC_010433 | TCA | 4 | 136385 | 136395 | 11 | Manihot esculenta chloroplast |
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| 141 | NC_010442 | TCA | 4 | 59867 | 59877 | 11 | Trachelium caeruleum chloroplast |
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| 142 | NC_010548 | TCA | 4 | 11258 | 11269 | 12 | Cryptomeria japonica chloroplast |
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| 143 | NC_010548 | TCA | 4 | 65543 | 65553 | 11 | Cryptomeria japonica chloroplast |
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| 144 | NC_010548 | TCA | 4 | 122875 | 122886 | 12 | Cryptomeria japonica chloroplast |
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| 145 | NC_010772 | TCA | 4 | 136255 | 136266 | 12 | Heterosigma akashiwo chloroplast |
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| 146 | NC_011152 | TCA | 4 | 92898 | 92908 | 11 | Picea sitchensis chloroplast |
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| 147 | NC_011153 | TCA | 4 | 92392 | 92402 | 11 | Pinus contorta chloroplast |
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| 148 | NC_011153 | TCA | 4 | 109796 | 109806 | 11 | Pinus contorta chloroplast |
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| 149 | NC_011154 | TCA | 4 | 91627 | 91637 | 11 | Pinus gerardiana chloroplast |
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| 150 | NC_011155 | TCA | 4 | 91437 | 91447 | 11 | Pinus krempfii chloroplast |
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| 151 | NC_011156 | TCA | 4 | 90912 | 90922 | 11 | Pinus lambertiana chloroplast |
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| 152 | NC_011158 | TCA | 4 | 91178 | 91188 | 11 | Pinus monophylla chloroplast |
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| 153 | NC_011159 | TCA | 4 | 91726 | 91736 | 11 | Pinus nelsonii chloroplast |
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| 154 | NC_011828 | TCA | 4 | 58581 | 58592 | 12 | Trifolium subterraneum chloroplast |
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| 155 | NC_012224 | TCA | 4 | 139437 | 139447 | 11 | Jatropha curcas chloroplast |
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| 156 | NC_012568 | TCA | 4 | 5441 | 5451 | 11 | Micromonas pusilla CCMP1545 chloroplast |
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| 157 | NC_012575 | TCA | 4 | 54142 | 54153 | 12 | Micromonas sp. RCC299 chloroplast |
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| 158 | NC_012615 | TCA | 4 | 65246 | 65256 | 11 | Megaleranthis saniculifolia chloroplast |
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| 159 | NC_013086 | TCA | 4 | 109465 | 109475 | 11 | Selaginella moellendorffii plastid |
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| 160 | NC_013273 | TCA | 4 | 69833 | 69844 | 12 | Coix lacryma-jobi chloroplast |
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| 161 | NC_013359 | TCA | 4 | 8263 | 8274 | 12 | Bryopsis hypnoides chloroplast |
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| 162 | NC_013359 | TCA | 4 | 27542 | 27554 | 13 | Bryopsis hypnoides chloroplast |
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| 163 | NC_013359 | TCA | 4 | 81323 | 81334 | 12 | Bryopsis hypnoides chloroplast |
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| 164 | NC_013359 | TCA | 4 | 102218 | 102229 | 12 | Bryopsis hypnoides chloroplast |
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| 165 | NC_014056 | TCA | 4 | 139287 | 139299 | 13 | Oncidium Gower Ramsey chloroplast |
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| 166 | NC_014062 | TCA | 4 | 66850 | 66860 | 11 | Anomochloa marantoidea chloroplast |
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