ChloroMitoSSRDB 2.0 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

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Chloroplast Motifs - Imperfect CAGA Repeats

S.NoSequence IDMotifIterationsStartEndTract LengthSequence Name
1NC_014569CAGA3476164762712Erodium texanum plastid
2NC_014569CAGA3887568876712Erodium texanum plastid
3NC_015803CAGA3510445105411Indocalamus longiauritus plastid
4NC_015817CAGA3509865099611Phyllostachys edulis chloroplast
5NC_015820CAGA3510315104111Acidosasa purpurea chloroplast
6NC_015826CAGA3509595096911Phyllostachys nigra var. henonis chloroplast
7NC_015830CAGA3505895059911Bambusa emeiensis chloroplast
8NC_015831CAGA3507215073111Ferrocalamus rimosivaginus plastid
9NC_015990CAGA3499884999811Panicum virgatum chloroplast
10NC_016677CAGA3494244943411Leersia tisserantii plastid
11NC_016699CAGA3509915100111Phyllostachys propinqua chloroplast
12NC_016718CAGA3492144922411Rhynchoryza subulata plastid
13NC_016927CAGA3481554816511Oryza meridionalis chloroplast
14NC_017006CAGA3711067111611Mankyua chejuensis chloroplast
15NC_017835CAGA3481434815311Oryza rufipogon chloroplast
16NC_019648CAGA3481794818911Festuca altissima plastid
17NC_019649CAGA3470464705611Festuca ovina plastid
18NC_019650CAGA3481784818811Festuca pratensis plastid
19NC_019651CAGA3480924810211Lolium multiflorum plastid
20NC_020341CAGA3509605097011Arundinaria gigantea chloroplast
21NC_021760CAGA3485724858211Triticum monococcum chloroplast
22NC_021761CAGA3486334864311Secale cereale chloroplast
23NC_021762CAGA3485444855411Triticum urartu chloroplast
24NC_022133CAGA3484344844411Aegilops tauschii chloroplast
25NC_022135CAGA3486234863311Aegilops speltoides isolate SPE0661 chloroplast
26NC_000927CAGA3709137092311 Nephroselmis olivacea chloroplast
27NC_001320CAGA3481644817411 Oryza sativa Japonica Group plastid
28NC_002762CAGA3487484875811 Triticum aestivum chloroplast
29NC_005973CAGA3480844809411 Oryza nivara chloroplast
30NC_008155CAGA3481054811511 Oryza sativa Indica Group chloroplast
31NC_008535CAGA3495414955111 Coffea arabica chloroplast
32NC_008590CAGA3489594896911 Hordeum vulgare subsp. vulgare chloroplast
33NC_008591CAGA3486574866711 Agrostis stolonifera chloroplast
34NC_009950CAGA3482254823511 Lolium perenne chloroplast
35NC_011032CAGA3482374824711 Brachypodium distachyon chloroplast
36NC_011713CAGA3486764868611 Festuca arundinacea chloroplast
37NC_012927CAGA3504545046411 Bambusa oldhamii chloroplast
38NC_013088CAGA3506305064011 Dendrocalamus latiflorus chloroplast
39NC_013273CAGA3509365094611 Coix lacryma-jobi chloroplast
40NC_014063CAGA3686596866911 Lathyrus sativus chloroplast