ChloroMitoSSRDB 2.0 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

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Chloroplast Motifs - Imperfect TTTCT Repeats

S.NoSequence IDMotifIterationsStartEndTract LengthSequence Name
1NC_008359TTTCT5240792410224 Morus indica chloroplast
2NC_008602TTTCT59698972124 Sorghum bicolor chloroplast
3NC_014570TTTCT4134651348319Eucalyptus grandis chloroplast
4NC_014676TTTCT48769878719Theobroma cacao chloroplast
5NC_008589TTTCT4376583767821 Thalassiosira pseudonana chloroplast
6NC_009962TTTCT410104410106320 Ceratophyllum demersum chloroplast
7NC_014340TTTCT3783857839915Chromera velia strain CCMP2878 chloroplast
8NC_014346TTTCT333590633591914Floydiella terrestris chloroplast
9NC_014346TTTCT336911536912814Floydiella terrestris chloroplast
10NC_014346TTTCT345558145559515Floydiella terrestris chloroplast
11NC_014582TTTCT3394913950414Monsonia speciosa plastid
12NC_014582TTTCT310027710029014Monsonia speciosa plastid
13NC_014589TTTCT3647806479415Cathaya argyrophylla chloroplast
14NC_015204TTTCT3127121272514Gossypium thurberi chloroplast
15NC_015204TTTCT314417114418515Gossypium thurberi chloroplast
16NC_015308TTTCT3454184543114Hevea brasiliensis chloroplast
17NC_015401TTTCT3134921350514Olea europaea subsp. europaea plastid
18NC_015543TTTCT3424604247314Jacobaea vulgaris chloroplast
19NC_015604TTTCT3134951350814Olea europaea subsp. cuspidata chloroplast
20NC_015608TTTCT3135111352414Olea woodiana subsp. woodiana chloroplast
21NC_015610TTTCT3349613497515Nelumbo nucifera chloroplast
22NC_015621TTTCT3428224283514Ageratina adenophora chloroplast
23NC_015623TTTCT3134971351014Olea europaea subsp. maroccana chloroplast
24NC_015645TTTCT3307153072814Schizomeris leibleinii chloroplast
25NC_015891TTTCT33466347914Spirodela polyrhiza chloroplast
26NC_015894TTTCT33055306814Wolffiella lingulata chloroplast
27NC_015899TTTCT33114312714Wolffia australiana chloroplast
28NC_015983TTTCT3133661338015Cucumis melo subsp. melo chloroplast
29NC_016058TTTCT3194801949415Larix decidua chloroplast
30NC_016064TTTCT3515605157415Pseudotsuga sinensis var. wilsoniana chloroplast
31NC_016433TTTCT3127731278715Sesamum indicum chloroplast
32NC_016468TTTCT3127601277314Boea hygrometrica chloroplast
33NC_016668TTTCT3126481266114Gossypium raimondii chloroplast
34NC_016668TTTCT314402514403915Gossypium raimondii chloroplast
35NC_016670TTTCT3127471276014Gossypium darwinii chloroplast
36NC_016690TTTCT3127441275714Gossypium tomentosum chloroplast
37NC_016692TTTCT3126981271114Gossypium herbaceum subsp. africanum chloroplast
38NC_016692TTTCT314421814423215Gossypium herbaceum subsp. africanum chloroplast
39NC_016711TTTCT3127241273714Gossypium mustelinum chloroplast
40NC_016711TTTCT314421714423115Gossypium mustelinum chloroplast
41NC_016712TTTCT3126991271214Gossypium arboreum chloroplast
42NC_016712TTTCT314413614415015Gossypium arboreum chloroplast
43NC_016732TTTCT317000917002315Dunaliella salina chloroplast
44NC_016753TTTCT33479349214Colocasia esculenta chloroplast
45NC_017609TTTCT311998712000115Phalaenopsis equestris chloroplast
46NC_017894TTTCT3126671268014Gossypium gossypioides chloroplast
47NC_017894TTTCT314389314390715Gossypium gossypioides chloroplast
48NC_018051TTTCT3334063341914Vigna unguiculata chloroplast
49NC_018111TTTCT3126941270714Gossypium capitis-viridis chloroplast
50NC_018113TTTCT3128291284315Gossypium robinsonii chloroplast
51NC_018565TTTCT3641426415615Pachycladon enysii chloroplast
52NC_020092TTTCT3425914260414Chrysanthemum x morifolium chloroplast
53NC_020098TTTCT3129201293314Tectona grandis chloroplast
54NC_020320TTTCT3426174263014Chrysanthemum indicum voucher HeN001 chloroplast
55NC_020365TTTCT313155613156914Calamus caryotoides plastid
56NC_020366TTTCT3734987351215Bismarckia nobilis plastid
57NC_020367TTTCT3799487996114Dasypogon bromeliifolius plastid
58NC_020431TTTCT3123241233714Salvia miltiorrhiza chloroplast
59NC_020431TTTCT3143251433915Salvia miltiorrhiza chloroplast
60NC_020607TTTCT3425994261214Artemisia frigida chloroplast
61NC_021091TTTCT3335473356014Vigna angularis chloroplast DNA
62NC_021101TTTCT3123101232314Francoa sonchifolia plastid
63NC_021102TTTCT312451512452915Pachycladon cheesemanii chloroplast
64NC_021426TTTCT3348973491014Trochodendron aralioides chloroplast
65NC_021426TTTCT3456394565315Trochodendron aralioides chloroplast
66NC_021430TTTCT312677412678815Cymbidium sinense voucher KUN:YJB100605 chloroplast
67NC_021431TTTCT312686112687515Cymbidium tortisepalum voucher KUN:HJL091027 chloroplast
68NC_021432TTTCT312749712751115Cymbidium tracyanum voucher KUN:YJB100606 chloroplast
69NC_021433TTTCT312690312691715Cymbidium mannii voucher KUN:YJB100602 chloroplast
70NC_021449TTTCT3117581177215Utricularia gibba chloroplast
71NC_021645TTTCT3308353084814Glycine cyrtoloba voucher CSIRO:G1267 chloroplast
72NC_021646TTTCT3308793089214Glycine stenophita voucher CSIRO:G1974 chloroplast
73NC_022136TTTCT33912392514Lygodium japonicum chloroplast
74NC_000926TTTCT3575375755014 Guillardia theta chloroplast
75NC_001865TTTCT3515085152114 Chlorella vulgaris chloroplast
76NC_001865TTTCT310017410018815 Chlorella vulgaris chloroplast
77NC_001865TTTCT312120812122114 Chlorella vulgaris chloroplast
78NC_002202TTTCT3340663407914 Spinacia oleracea plastid
79NC_003386TTTCT3822588227215 Psilotum nudum chloroplast
80NC_004766TTTCT3834738348614 Adiantum capillus-veneris chloroplast
81NC_006137TTTCT3891298914315 Gracilaria tenuistipitata var. liui chloroplast
82NC_007144TTTCT3133671338115 Cucumis sativus chloroplast
83NC_007407TTTCT312440712442115 Acorus calamus plastid
84NC_007499TTTCT312007012008415 Phalaenopsis aphrodite subsp. formosana chloroplast
85NC_007944TTTCT3127291274214 Gossypium hirsutum chloroplast
86NC_007944TTTCT314422114423515 Gossypium hirsutum chloroplast
87NC_007977TTTCT3430304304314 Helianthus annuus chloroplast
88NC_008114TTTCT3320783209114 Pseudendoclonium akinetum chloroplast
89NC_008336TTTCT3428554286814 Nandina domestica chloroplast
90NC_008372TTTCT3217872180115 Stigeoclonium helveticum chloroplast
91NC_008407TTTCT3138801389314 Jasminum nudiflorum chloroplast
92NC_008407TTTCT313832013833415 Jasminum nudiflorum chloroplast
93NC_008457TTTCT3147481476114 Piper cenocladum chloroplast
94NC_008535TTTCT312113515 Coffea arabica chloroplast
95NC_008641TTTCT3127541276714 Gossypium barbadense chloroplast
96NC_008822TTTCT3442734428715 Chlorokybus atmophyticus chloroplast
97NC_009265TTTCT3468874690115 Aethionema cordifolium chloroplast
98NC_009266TTTCT3469344694714 Aethionema grandiflorum chloroplast
99NC_009267TTTCT312475412476815 Olimarabidopsis pumila chloroplast
100NC_009270TTTCT312455112456515 Capsella bursa-pastoris chloroplast
101NC_009271TTTCT3643116432414 Crucihimalaya wallichii chloroplast
102NC_009275TTTCT3645246453815 Nasturtium officinale chloroplast
103NC_010093TTTCT312407712409115 Acorus americanus chloroplast
104NC_010362TTTCT3371423715615 Oenothera parviflora chloroplast
105NC_010433TTTCT3446484466114 Manihot esculenta chloroplast
106NC_010654TTTCT311400611402116 Welwitschia mirabilis chloroplast
107NC_010776TTTCT3680556806814 Fagopyrum esculentum subsp. ancestrale chloroplast
108NC_011942TTTCT3804018041414 Gnetum parvifolium chloroplast
109NC_012052TTTCT311197411198714 Syntrichia ruralis chloroplast
110NC_013553TTTCT3435074352014 Parthenium argentatum chloroplast
111NC_013823TTTCT3108121082514 Typha latifolia chloroplast
112NC_013843TTTCT3334303344314 Vigna radiata chloroplast
113NC_013991TTTCT3732647327714 Phoenix dactylifera chloroplast
114NC_014056TTTCT3312353124915 Oncidium Gower Ramsey chloroplast
115NC_013707TTTCT3134651347814 Olea europaea chloroplast