Chloroplast Motifs - Imperfect TTTCT Repeats
S.No | Sequence ID | Motif | Iterations | Start | End | Tract Length | Sequence Name |
---|---|---|---|---|---|---|---|
1 | NC_008359 | TTTCT | 5 | 24079 | 24102 | 24 | Morus indica chloroplast |
2 | NC_008602 | TTTCT | 5 | 9698 | 9721 | 24 | Sorghum bicolor chloroplast |
3 | NC_014570 | TTTCT | 4 | 13465 | 13483 | 19 | Eucalyptus grandis chloroplast |
4 | NC_014676 | TTTCT | 4 | 8769 | 8787 | 19 | Theobroma cacao chloroplast |
5 | NC_008589 | TTTCT | 4 | 37658 | 37678 | 21 | Thalassiosira pseudonana chloroplast |
6 | NC_009962 | TTTCT | 4 | 101044 | 101063 | 20 | Ceratophyllum demersum chloroplast |
7 | NC_014340 | TTTCT | 3 | 78385 | 78399 | 15 | Chromera velia strain CCMP2878 chloroplast |
8 | NC_014346 | TTTCT | 3 | 335906 | 335919 | 14 | Floydiella terrestris chloroplast |
9 | NC_014346 | TTTCT | 3 | 369115 | 369128 | 14 | Floydiella terrestris chloroplast |
10 | NC_014346 | TTTCT | 3 | 455581 | 455595 | 15 | Floydiella terrestris chloroplast |
11 | NC_014582 | TTTCT | 3 | 39491 | 39504 | 14 | Monsonia speciosa plastid |
12 | NC_014582 | TTTCT | 3 | 100277 | 100290 | 14 | Monsonia speciosa plastid |
13 | NC_014589 | TTTCT | 3 | 64780 | 64794 | 15 | Cathaya argyrophylla chloroplast |
14 | NC_015204 | TTTCT | 3 | 12712 | 12725 | 14 | Gossypium thurberi chloroplast |
15 | NC_015204 | TTTCT | 3 | 144171 | 144185 | 15 | Gossypium thurberi chloroplast |
16 | NC_015308 | TTTCT | 3 | 45418 | 45431 | 14 | Hevea brasiliensis chloroplast |
17 | NC_015401 | TTTCT | 3 | 13492 | 13505 | 14 | Olea europaea subsp. europaea plastid |
18 | NC_015543 | TTTCT | 3 | 42460 | 42473 | 14 | Jacobaea vulgaris chloroplast |
19 | NC_015604 | TTTCT | 3 | 13495 | 13508 | 14 | Olea europaea subsp. cuspidata chloroplast |
20 | NC_015608 | TTTCT | 3 | 13511 | 13524 | 14 | Olea woodiana subsp. woodiana chloroplast |
21 | NC_015610 | TTTCT | 3 | 34961 | 34975 | 15 | Nelumbo nucifera chloroplast |
22 | NC_015621 | TTTCT | 3 | 42822 | 42835 | 14 | Ageratina adenophora chloroplast |
23 | NC_015623 | TTTCT | 3 | 13497 | 13510 | 14 | Olea europaea subsp. maroccana chloroplast |
24 | NC_015645 | TTTCT | 3 | 30715 | 30728 | 14 | Schizomeris leibleinii chloroplast |
25 | NC_015891 | TTTCT | 3 | 3466 | 3479 | 14 | Spirodela polyrhiza chloroplast |
26 | NC_015894 | TTTCT | 3 | 3055 | 3068 | 14 | Wolffiella lingulata chloroplast |
27 | NC_015899 | TTTCT | 3 | 3114 | 3127 | 14 | Wolffia australiana chloroplast |
28 | NC_015983 | TTTCT | 3 | 13366 | 13380 | 15 | Cucumis melo subsp. melo chloroplast |
29 | NC_016058 | TTTCT | 3 | 19480 | 19494 | 15 | Larix decidua chloroplast |
30 | NC_016064 | TTTCT | 3 | 51560 | 51574 | 15 | Pseudotsuga sinensis var. wilsoniana chloroplast |
31 | NC_016433 | TTTCT | 3 | 12773 | 12787 | 15 | Sesamum indicum chloroplast |
32 | NC_016468 | TTTCT | 3 | 12760 | 12773 | 14 | Boea hygrometrica chloroplast |
33 | NC_016668 | TTTCT | 3 | 12648 | 12661 | 14 | Gossypium raimondii chloroplast |
34 | NC_016668 | TTTCT | 3 | 144025 | 144039 | 15 | Gossypium raimondii chloroplast |
35 | NC_016670 | TTTCT | 3 | 12747 | 12760 | 14 | Gossypium darwinii chloroplast |
36 | NC_016690 | TTTCT | 3 | 12744 | 12757 | 14 | Gossypium tomentosum chloroplast |
37 | NC_016692 | TTTCT | 3 | 12698 | 12711 | 14 | Gossypium herbaceum subsp. africanum chloroplast |
38 | NC_016692 | TTTCT | 3 | 144218 | 144232 | 15 | Gossypium herbaceum subsp. africanum chloroplast |
39 | NC_016711 | TTTCT | 3 | 12724 | 12737 | 14 | Gossypium mustelinum chloroplast |
40 | NC_016711 | TTTCT | 3 | 144217 | 144231 | 15 | Gossypium mustelinum chloroplast |
41 | NC_016712 | TTTCT | 3 | 12699 | 12712 | 14 | Gossypium arboreum chloroplast |
42 | NC_016712 | TTTCT | 3 | 144136 | 144150 | 15 | Gossypium arboreum chloroplast |
43 | NC_016732 | TTTCT | 3 | 170009 | 170023 | 15 | Dunaliella salina chloroplast |
44 | NC_016753 | TTTCT | 3 | 3479 | 3492 | 14 | Colocasia esculenta chloroplast |
45 | NC_017609 | TTTCT | 3 | 119987 | 120001 | 15 | Phalaenopsis equestris chloroplast |
46 | NC_017894 | TTTCT | 3 | 12667 | 12680 | 14 | Gossypium gossypioides chloroplast |
47 | NC_017894 | TTTCT | 3 | 143893 | 143907 | 15 | Gossypium gossypioides chloroplast |
48 | NC_018051 | TTTCT | 3 | 33406 | 33419 | 14 | Vigna unguiculata chloroplast |
49 | NC_018111 | TTTCT | 3 | 12694 | 12707 | 14 | Gossypium capitis-viridis chloroplast |
50 | NC_018113 | TTTCT | 3 | 12829 | 12843 | 15 | Gossypium robinsonii chloroplast |
51 | NC_018565 | TTTCT | 3 | 64142 | 64156 | 15 | Pachycladon enysii chloroplast |
52 | NC_020092 | TTTCT | 3 | 42591 | 42604 | 14 | Chrysanthemum x morifolium chloroplast |
53 | NC_020098 | TTTCT | 3 | 12920 | 12933 | 14 | Tectona grandis chloroplast |
54 | NC_020320 | TTTCT | 3 | 42617 | 42630 | 14 | Chrysanthemum indicum voucher HeN001 chloroplast |
55 | NC_020365 | TTTCT | 3 | 131556 | 131569 | 14 | Calamus caryotoides plastid |
56 | NC_020366 | TTTCT | 3 | 73498 | 73512 | 15 | Bismarckia nobilis plastid |
57 | NC_020367 | TTTCT | 3 | 79948 | 79961 | 14 | Dasypogon bromeliifolius plastid |
58 | NC_020431 | TTTCT | 3 | 12324 | 12337 | 14 | Salvia miltiorrhiza chloroplast |
59 | NC_020431 | TTTCT | 3 | 14325 | 14339 | 15 | Salvia miltiorrhiza chloroplast |
60 | NC_020607 | TTTCT | 3 | 42599 | 42612 | 14 | Artemisia frigida chloroplast |
61 | NC_021091 | TTTCT | 3 | 33547 | 33560 | 14 | Vigna angularis chloroplast DNA |
62 | NC_021101 | TTTCT | 3 | 12310 | 12323 | 14 | Francoa sonchifolia plastid |
63 | NC_021102 | TTTCT | 3 | 124515 | 124529 | 15 | Pachycladon cheesemanii chloroplast |
64 | NC_021426 | TTTCT | 3 | 34897 | 34910 | 14 | Trochodendron aralioides chloroplast |
65 | NC_021426 | TTTCT | 3 | 45639 | 45653 | 15 | Trochodendron aralioides chloroplast |
66 | NC_021430 | TTTCT | 3 | 126774 | 126788 | 15 | Cymbidium sinense voucher KUN:YJB100605 chloroplast |
67 | NC_021431 | TTTCT | 3 | 126861 | 126875 | 15 | Cymbidium tortisepalum voucher KUN:HJL091027 chloroplast |
68 | NC_021432 | TTTCT | 3 | 127497 | 127511 | 15 | Cymbidium tracyanum voucher KUN:YJB100606 chloroplast |
69 | NC_021433 | TTTCT | 3 | 126903 | 126917 | 15 | Cymbidium mannii voucher KUN:YJB100602 chloroplast |
70 | NC_021449 | TTTCT | 3 | 11758 | 11772 | 15 | Utricularia gibba chloroplast |
71 | NC_021645 | TTTCT | 3 | 30835 | 30848 | 14 | Glycine cyrtoloba voucher CSIRO:G1267 chloroplast |
72 | NC_021646 | TTTCT | 3 | 30879 | 30892 | 14 | Glycine stenophita voucher CSIRO:G1974 chloroplast |
73 | NC_022136 | TTTCT | 3 | 3912 | 3925 | 14 | Lygodium japonicum chloroplast |
74 | NC_000926 | TTTCT | 3 | 57537 | 57550 | 14 | Guillardia theta chloroplast |
75 | NC_001865 | TTTCT | 3 | 51508 | 51521 | 14 | Chlorella vulgaris chloroplast |
76 | NC_001865 | TTTCT | 3 | 100174 | 100188 | 15 | Chlorella vulgaris chloroplast |
77 | NC_001865 | TTTCT | 3 | 121208 | 121221 | 14 | Chlorella vulgaris chloroplast |
78 | NC_002202 | TTTCT | 3 | 34066 | 34079 | 14 | Spinacia oleracea plastid |
79 | NC_003386 | TTTCT | 3 | 82258 | 82272 | 15 | Psilotum nudum chloroplast |
80 | NC_004766 | TTTCT | 3 | 83473 | 83486 | 14 | Adiantum capillus-veneris chloroplast |
81 | NC_006137 | TTTCT | 3 | 89129 | 89143 | 15 | Gracilaria tenuistipitata var. liui chloroplast |
82 | NC_007144 | TTTCT | 3 | 13367 | 13381 | 15 | Cucumis sativus chloroplast |
83 | NC_007407 | TTTCT | 3 | 124407 | 124421 | 15 | Acorus calamus plastid |
84 | NC_007499 | TTTCT | 3 | 120070 | 120084 | 15 | Phalaenopsis aphrodite subsp. formosana chloroplast |
85 | NC_007944 | TTTCT | 3 | 12729 | 12742 | 14 | Gossypium hirsutum chloroplast |
86 | NC_007944 | TTTCT | 3 | 144221 | 144235 | 15 | Gossypium hirsutum chloroplast |
87 | NC_007977 | TTTCT | 3 | 43030 | 43043 | 14 | Helianthus annuus chloroplast |
88 | NC_008114 | TTTCT | 3 | 32078 | 32091 | 14 | Pseudendoclonium akinetum chloroplast |
89 | NC_008336 | TTTCT | 3 | 42855 | 42868 | 14 | Nandina domestica chloroplast |
90 | NC_008372 | TTTCT | 3 | 21787 | 21801 | 15 | Stigeoclonium helveticum chloroplast |
91 | NC_008407 | TTTCT | 3 | 13880 | 13893 | 14 | Jasminum nudiflorum chloroplast |
92 | NC_008407 | TTTCT | 3 | 138320 | 138334 | 15 | Jasminum nudiflorum chloroplast |
93 | NC_008457 | TTTCT | 3 | 14748 | 14761 | 14 | Piper cenocladum chloroplast |
94 | NC_008535 | TTTCT | 3 | 121 | 135 | 15 | Coffea arabica chloroplast |
95 | NC_008641 | TTTCT | 3 | 12754 | 12767 | 14 | Gossypium barbadense chloroplast |
96 | NC_008822 | TTTCT | 3 | 44273 | 44287 | 15 | Chlorokybus atmophyticus chloroplast |
97 | NC_009265 | TTTCT | 3 | 46887 | 46901 | 15 | Aethionema cordifolium chloroplast |
98 | NC_009266 | TTTCT | 3 | 46934 | 46947 | 14 | Aethionema grandiflorum chloroplast |
99 | NC_009267 | TTTCT | 3 | 124754 | 124768 | 15 | Olimarabidopsis pumila chloroplast |
100 | NC_009270 | TTTCT | 3 | 124551 | 124565 | 15 | Capsella bursa-pastoris chloroplast |
101 | NC_009271 | TTTCT | 3 | 64311 | 64324 | 14 | Crucihimalaya wallichii chloroplast |
102 | NC_009275 | TTTCT | 3 | 64524 | 64538 | 15 | Nasturtium officinale chloroplast |
103 | NC_010093 | TTTCT | 3 | 124077 | 124091 | 15 | Acorus americanus chloroplast |
104 | NC_010362 | TTTCT | 3 | 37142 | 37156 | 15 | Oenothera parviflora chloroplast |
105 | NC_010433 | TTTCT | 3 | 44648 | 44661 | 14 | Manihot esculenta chloroplast |
106 | NC_010654 | TTTCT | 3 | 114006 | 114021 | 16 | Welwitschia mirabilis chloroplast |
107 | NC_010776 | TTTCT | 3 | 68055 | 68068 | 14 | Fagopyrum esculentum subsp. ancestrale chloroplast |
108 | NC_011942 | TTTCT | 3 | 80401 | 80414 | 14 | Gnetum parvifolium chloroplast |
109 | NC_012052 | TTTCT | 3 | 111974 | 111987 | 14 | Syntrichia ruralis chloroplast |
110 | NC_013553 | TTTCT | 3 | 43507 | 43520 | 14 | Parthenium argentatum chloroplast |
111 | NC_013823 | TTTCT | 3 | 10812 | 10825 | 14 | Typha latifolia chloroplast |
112 | NC_013843 | TTTCT | 3 | 33430 | 33443 | 14 | Vigna radiata chloroplast |
113 | NC_013991 | TTTCT | 3 | 73264 | 73277 | 14 | Phoenix dactylifera chloroplast |
114 | NC_014056 | TTTCT | 3 | 31235 | 31249 | 15 | Oncidium Gower Ramsey chloroplast |
115 | NC_013707 | TTTCT | 3 | 13465 | 13478 | 14 | Olea europaea chloroplast |