Chloroplast Motifs - Imperfect CTAA Repeats
| S.No | Sequence ID | Motif | Iterations | Start | End | Tract Length | Sequence Name |
| 1 | NC_020362 | CTAA | 6 | 65771 | 65792 | 22 | Heliconia collinsiana plastid |
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| 2 | NC_020363 | CTAA | 6 | 62718 | 62739 | 22 | Zingiber spectabile plastid |
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| 3 | NC_014267 | CTAA | 3 | 62724 | 62736 | 13 | Kryptoperidinium foliaceum chloroplast |
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| 4 | NC_014573 | CTAA | 3 | 136719 | 136730 | 12 | Geranium palmatum plastid |
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| 5 | NC_014582 | CTAA | 3 | 122260 | 122271 | 12 | Monsonia speciosa plastid |
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| 6 | NC_015204 | CTAA | 3 | 29112 | 29123 | 12 | Gossypium thurberi chloroplast |
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| 7 | NC_015206 | CTAA | 3 | 131411 | 131421 | 11 | Fragaria vesca subsp. vesca chloroplast |
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| 8 | NC_015402 | CTAA | 3 | 21598 | 21608 | 11 | Ptilidium pulcherrimum chloroplast |
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| 9 | NC_015996 | CTAA | 3 | 117670 | 117680 | 11 | Pyrus pyrifolia chloroplast |
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| 10 | NC_016430 | CTAA | 3 | 7818 | 7829 | 12 | Eleutherococcus senticosus chloroplast |
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| 11 | NC_016471 | CTAA | 3 | 27082 | 27094 | 13 | Neottia nidus-avis plastid |
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| 12 | NC_016471 | CTAA | 3 | 69446 | 69456 | 11 | Neottia nidus-avis plastid |
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| 13 | NC_016668 | CTAA | 3 | 29036 | 29047 | 12 | Gossypium raimondii chloroplast |
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| 14 | NC_016670 | CTAA | 3 | 29127 | 29138 | 12 | Gossypium darwinii chloroplast |
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| 15 | NC_016690 | CTAA | 3 | 29142 | 29153 | 12 | Gossypium tomentosum chloroplast |
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| 16 | NC_016692 | CTAA | 3 | 29100 | 29111 | 12 | Gossypium herbaceum subsp. africanum chloroplast |
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| 17 | NC_016711 | CTAA | 3 | 29108 | 29119 | 12 | Gossypium mustelinum chloroplast |
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| 18 | NC_016712 | CTAA | 3 | 29100 | 29111 | 12 | Gossypium arboreum chloroplast |
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| 19 | NC_016732 | CTAA | 3 | 9055 | 9066 | 12 | Dunaliella salina chloroplast |
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| 20 | NC_016732 | CTAA | 3 | 82111 | 82121 | 11 | Dunaliella salina chloroplast |
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| 21 | NC_016736 | CTAA | 3 | 63475 | 63486 | 12 | Ricinus communis chloroplast |
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| 22 | NC_017006 | CTAA | 3 | 141366 | 141377 | 12 | Mankyua chejuensis chloroplast |
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| 23 | NC_017894 | CTAA | 3 | 29050 | 29061 | 12 | Gossypium gossypioides chloroplast |
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| 24 | NC_018109 | CTAA | 3 | 28840 | 28851 | 12 | Gossypium incanum chloroplast |
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| 25 | NC_018109 | CTAA | 3 | 37757 | 37769 | 13 | Gossypium incanum chloroplast |
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| 26 | NC_018110 | CTAA | 3 | 28939 | 28950 | 12 | Gossypium somalense chloroplast |
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| 27 | NC_018110 | CTAA | 3 | 37878 | 37890 | 13 | Gossypium somalense chloroplast |
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| 28 | NC_018111 | CTAA | 3 | 28986 | 28997 | 12 | Gossypium capitis-viridis chloroplast |
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| 29 | NC_018112 | CTAA | 3 | 28939 | 28950 | 12 | Gossypium areysianum chloroplast |
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| 30 | NC_018112 | CTAA | 3 | 37889 | 37901 | 13 | Gossypium areysianum chloroplast |
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| 31 | NC_018113 | CTAA | 3 | 29186 | 29197 | 12 | Gossypium robinsonii chloroplast |
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| 32 | NC_019601 | CTAA | 3 | 131334 | 131344 | 11 | Fragaria chiloensis chloroplast |
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| 33 | NC_019602 | CTAA | 3 | 131352 | 131362 | 11 | Fragaria virginiana chloroplast |
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| 34 | NC_019616 | CTAA | 3 | 79328 | 79339 | 12 | Vaccinium macrocarpon plastid |
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| 35 | NC_019628 | CTAA | 3 | 102321 | 102332 | 12 | Pellia endiviifolia chloroplast |
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| 36 | NC_020019 | CTAA | 3 | 7500 | 7511 | 12 | Camellia sinensis chloroplast |
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| 37 | NC_020147 | CTAA | 3 | 124069 | 124080 | 12 | Ophioglossum californicum chloroplast |
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| 38 | NC_020367 | CTAA | 3 | 116432 | 116443 | 12 | Dasypogon bromeliifolius plastid |
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| 39 | NC_020438 | CTAA | 3 | 128925 | 128937 | 13 | Gonium pectorale chloroplast |
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| 40 | NC_021423 | CTAA | 3 | 7099 | 7110 | 12 | Catharanthus roseus cultivar Pacifica Punch Halo chloroplast |
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| 41 | NC_021423 | CTAA | 3 | 83352 | 83363 | 12 | Catharanthus roseus cultivar Pacifica Punch Halo chloroplast |
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| 42 | NC_021637 | CTAA | 3 | 57671 | 57681 | 11 | Phaeocystis globosa strain Pg-G(A) chloroplast |
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| 43 | NC_021637 | CTAA | 3 | 83475 | 83486 | 12 | Phaeocystis globosa strain Pg-G(A) chloroplast |
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| 44 | NC_000925 | CTAA | 3 | 32438 | 32448 | 11 | Porphyra purpurea chloroplast |
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| 45 | NC_001675 | CTAA | 3 | 29151 | 29162 | 12 | Cyanophora paradoxa cyanelle |
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| 46 | NC_001840 | CTAA | 3 | 96218 | 96229 | 12 | Cyanidium caldarium chloroplast |
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| 47 | NC_002202 | CTAA | 3 | 122945 | 122956 | 12 | Spinacia oleracea plastid |
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| 48 | NC_003386 | CTAA | 3 | 8667 | 8677 | 11 | Psilotum nudum chloroplast |
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| 49 | NC_003386 | CTAA | 3 | 87451 | 87461 | 11 | Psilotum nudum chloroplast |
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| 50 | NC_004823 | CTAA | 3 | 1521 | 1532 | 12 | Eimeria tenella strain Penn State apicoplast |
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| 51 | NC_005087 | CTAA | 3 | 18000 | 18011 | 12 | Physcomitrella patens subsp. patens chloroplast |
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| 52 | NC_006290 | CTAA | 3 | 7849 | 7860 | 12 | Panax ginseng chloroplast |
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| 53 | NC_006290 | CTAA | 3 | 44481 | 44492 | 12 | Panax ginseng chloroplast |
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| 54 | NC_007932 | CTAA | 3 | 116244 | 116255 | 12 | Porphyra yezoensis chloroplast |
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| 55 | NC_007944 | CTAA | 3 | 29130 | 29141 | 12 | Gossypium hirsutum chloroplast |
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| 56 | NC_007957 | CTAA | 3 | 8083 | 8094 | 12 | Vitis vinifera chloroplast |
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| 57 | NC_008099 | CTAA | 3 | 88608 | 88619 | 12 | Oltmannsiellopsis viridis chloroplast |
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| 58 | NC_008114 | CTAA | 3 | 51085 | 51096 | 12 | Pseudendoclonium akinetum chloroplast |
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| 59 | NC_008588 | CTAA | 3 | 55150 | 55161 | 12 | Phaeodactylum tricornutum chloroplast |
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| 60 | NC_008641 | CTAA | 3 | 29130 | 29141 | 12 | Gossypium barbadense chloroplast |
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| 61 | NC_008796 | CTAA | 3 | 6646 | 6657 | 12 | Ranunculus macranthus chloroplast |
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| 62 | NC_008822 | CTAA | 3 | 10338 | 10349 | 12 | Chlorokybus atmophyticus chloroplast |
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| 63 | NC_008829 | CTAA | 3 | 11322 | 11332 | 11 | Angiopteris evecta chloroplast |
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| 64 | NC_009265 | CTAA | 3 | 114780 | 114791 | 12 | Aethionema cordifolium chloroplast |
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| 65 | NC_009273 | CTAA | 3 | 49053 | 49064 | 12 | Lepidium virginicum chloroplast |
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| 66 | NC_009274 | CTAA | 3 | 47617 | 47628 | 12 | Lobularia maritima chloroplast |
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| 67 | NC_009275 | CTAA | 3 | 49136 | 49147 | 12 | Nasturtium officinale chloroplast |
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| 68 | NC_010323 | CTAA | 3 | 73506 | 73516 | 11 | Carica papaya chloroplast |
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| 69 | NC_010359 | CTAA | 3 | 88194 | 88205 | 12 | Aneura mirabilis chloroplast |
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| 70 | NC_010548 | CTAA | 3 | 107786 | 107796 | 11 | Cryptomeria japonica chloroplast |
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| 71 | NC_010776 | CTAA | 3 | 69708 | 69719 | 12 | Fagopyrum esculentum subsp. ancestrale chloroplast |
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| 72 | NC_012224 | CTAA | 3 | 72434 | 72446 | 13 | Jatropha curcas chloroplast |
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| 73 | NC_012615 | CTAA | 3 | 7115 | 7126 | 12 | Megaleranthis saniculifolia chloroplast |
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| 74 | NC_012903 | CTAA | 3 | 5435 | 5445 | 11 | Aureoumbra lagunensis chloroplast |
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| 75 | NC_013498 | CTAA | 3 | 21863 | 21875 | 13 | Ectocarpus siliculosus chloroplast |
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| 76 | NC_013498 | CTAA | 3 | 132158 | 132168 | 11 | Ectocarpus siliculosus chloroplast |
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