ChloroMitoSSRDB 2.0 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

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Chloroplast Motifs - Imperfect TAGA Repeats

S.NoSequence IDMotifIterationsStartEndTract LengthSequence Name
1NC_011087TAGA412212312213715Paulinella chromatophora chromatophore
2NC_021429TAGA4674906750516Cymbidium aloifolium voucher KUN:YJB100604 chloroplast
3NC_021636TAGA4184371845216Glycine tomentella voucher CSIRO:G1403 chloroplast
4NC_021636TAGA4472094722416Glycine tomentella voucher CSIRO:G1403 chloroplast
5NC_021645TAGA4183111832616Glycine cyrtoloba voucher CSIRO:G1267 chloroplast
6NC_021646TAGA4182901830516Glycine stenophita voucher CSIRO:G1974 chloroplast
7NC_021646TAGA4183611837616Glycine stenophita voucher CSIRO:G1974 chloroplast
8NC_021647TAGA4184361845116Glycine canescens voucher CSIRO:G1232 chloroplast
9NC_021648TAGA4184391845416Glycine dolichocarpa voucher CSIRO:G1134 chloroplast
10NC_021648TAGA4472254724016Glycine dolichocarpa voucher CSIRO:G1134 chloroplast
11NC_021649TAGA4184681848316Glycine falcata voucher CSIRO:G1718 chloroplast
12NC_021650TAGA4184341844916Glycine syndetika voucher CSIRO:G1300 chloroplast
13NC_021650TAGA4472354725016Glycine syndetika voucher CSIRO:G1300 chloroplast
14NC_007942TAGA4184461846116 Glycine max chloroplast
15NC_007957TAGA4390093902416 Vitis vinifera chloroplast
16NC_008590TAGA411670011671415 Hordeum vulgare subsp. vulgare chloroplast
17NC_011087TAGA3369923700211Paulinella chromatophora chromatophore
18NC_011087TAGA345266945267911Paulinella chromatophora chromatophore
19NC_011087TAGA382624082625011Paulinella chromatophora chromatophore
20NC_014346TAGA340709640710611Floydiella terrestris chloroplast
21NC_014348TAGA3316603167112Pteridium aquilinum subsp. aquilinum chloroplast
22NC_014569TAGA35681569212Erodium texanum plastid
23NC_014569TAGA3686716868111Erodium texanum plastid
24NC_014573TAGA3340303404011Geranium palmatum plastid
25NC_014575TAGA3480184802912Cedrus deodara chloroplast
26NC_014676TAGA312107112108212Theobroma cacao chloroplast
27NC_015083TAGA3329543296512Erodium carvifolium chloroplast
28NC_015083TAGA310572710573812Erodium carvifolium chloroplast
29NC_015204TAGA312081212082312Gossypium thurberi chloroplast
30NC_015401TAGA3614896150012Olea europaea subsp. europaea plastid
31NC_015604TAGA3614856149612Olea europaea subsp. cuspidata chloroplast
32NC_015608TAGA3615596157012Olea woodiana subsp. woodiana chloroplast
33NC_015623TAGA3614996151012Olea europaea subsp. maroccana chloroplast
34NC_015996TAGA3546375464711Pyrus pyrifolia chloroplast
35NC_016058TAGA3684396845012Larix decidua chloroplast
36NC_016058TAGA3896918970111Larix decidua chloroplast
37NC_016063TAGA3176231763311Cephalotaxus wilsoniana chloroplast DNA
38NC_016064TAGA310034410035512Pseudotsuga sinensis var. wilsoniana chloroplast
39NC_016065TAGA310570110571111Taiwania cryptomerioides chloroplast DNA
40NC_016430TAGA311854111855212Eleutherococcus senticosus chloroplast
41NC_016433TAGA36428643811Sesamum indicum chloroplast
42NC_016433TAGA3603796039012Sesamum indicum chloroplast
43NC_016468TAGA3603006031112Boea hygrometrica chloroplast
44NC_016677TAGA3829788298912Leersia tisserantii plastid
45NC_016727TAGA311379511380612Silene vulgaris chloroplast
46NC_016728TAGA310832910834012Silene noctiflora chloroplast
47NC_016728TAGA311474111475212Silene noctiflora chloroplast
48NC_016730TAGA311392711393812Silene latifolia chloroplast
49NC_016732TAGA3312293123911Dunaliella salina chloroplast
50NC_016732TAGA3643546436411Dunaliella salina chloroplast
51NC_016732TAGA312731612732712Dunaliella salina chloroplast
52NC_016732TAGA319359119360111Dunaliella salina chloroplast
53NC_016753TAGA315259515260612Colocasia esculenta chloroplast
54NC_016986TAGA3745347454411Ginkgo biloba chloroplast
55NC_016986TAGA315580315581412Ginkgo biloba chloroplast
56NC_017006TAGA3894228943211Mankyua chejuensis chloroplast
57NC_017602TAGA314675614676712Elaeis guineensis chloroplast
58NC_017609TAGA3110821109211Phalaenopsis equestris chloroplast
59NC_017609TAGA3706717068111Phalaenopsis equestris chloroplast
60NC_017609TAGA313847013848112Phalaenopsis equestris chloroplast
61NC_017754TAGA3619596196911Eutreptiella gymnastica plastid
62NC_018114TAGA3105141052411Erycina pusilla chloroplast
63NC_018114TAGA313291413292512Erycina pusilla chloroplast
64NC_018117TAGA312345412346512Datura stramonium chloroplast
65NC_018357TAGA34680469112Magnolia denudata chloroplast
66NC_018541TAGA3866438665412Elodea canadensis chloroplast
67NC_018541TAGA314732114733212Elodea canadensis chloroplast
68NC_018552TAGA312411312412412Capsicum annuum chloroplast
69NC_018565TAGA3421704218112Pachycladon enysii chloroplast
70NC_019616TAGA312597112598212Vaccinium macrocarpon plastid
71NC_019650TAGA3566155662612Festuca pratensis plastid
72NC_020147TAGA3823398234911Ophioglossum californicum chloroplast
73NC_020316TAGA34709472012Magnolia officinalis chloroplast
74NC_020317TAGA34708471912Magnolia officinalis subsp. biloba voucher SC001 chloroplast
75NC_020318TAGA34677468812Magnolia grandiflora voucher NJ016 chloroplast
76NC_020321TAGA3456934570412Taxus mairei voucher NN014 chloroplast
77NC_020321TAGA3745177452711Taxus mairei voucher NN014 chloroplast
78NC_020321TAGA3951329514211Taxus mairei voucher NN014 chloroplast
79NC_020321TAGA311405111406313Taxus mairei voucher NN014 chloroplast
80NC_020364TAGA3607046071512Pseudophoenix vinifera plastid
81NC_020364TAGA314747914749012Pseudophoenix vinifera plastid
82NC_020365TAGA3311423115312Calamus caryotoides plastid
83NC_020365TAGA314686214687312Calamus caryotoides plastid
84NC_020366TAGA3613866139712Bismarckia nobilis plastid
85NC_020366TAGA314794414795512Bismarckia nobilis plastid
86NC_020367TAGA314750714751812Dasypogon bromeliifolius plastid
87NC_020795TAGA312735112736111Chondrus crispus plastid complete genome
88NC_020795TAGA316640716641711Chondrus crispus plastid complete genome
89NC_021075TAGA316406916407911Calliarthron tuberculosum chloroplast
90NC_021101TAGA34711472212Francoa sonchifolia plastid
91NC_021102TAGA3417364174712Pachycladon cheesemanii chloroplast
92NC_021102TAGA3646806469011Pachycladon cheesemanii chloroplast
93NC_021110TAGA3174851749511Cephalotaxus oliveri chloroplast
94NC_021429TAGA311748511749511Cymbidium aloifolium voucher KUN:YJB100604 chloroplast
95NC_021429TAGA314650114651212Cymbidium aloifolium voucher KUN:YJB100604 chloroplast
96NC_021430TAGA3102101022011Cymbidium sinense voucher KUN:YJB100605 chloroplast
97NC_021430TAGA311629811630811Cymbidium sinense voucher KUN:YJB100605 chloroplast
98NC_021430TAGA313999414000411Cymbidium sinense voucher KUN:YJB100605 chloroplast
99NC_021430TAGA314514814515912Cymbidium sinense voucher KUN:YJB100605 chloroplast
100NC_021431TAGA3102831029311Cymbidium tortisepalum voucher KUN:HJL091027 chloroplast
101NC_021431TAGA311637711638711Cymbidium tortisepalum voucher KUN:HJL091027 chloroplast
102NC_021431TAGA314008214009211Cymbidium tortisepalum voucher KUN:HJL091027 chloroplast
103NC_021431TAGA314523614524712Cymbidium tortisepalum voucher KUN:HJL091027 chloroplast
104NC_021432TAGA3100561006611Cymbidium tracyanum voucher KUN:YJB100606 chloroplast
105NC_021432TAGA311678811679811Cymbidium tracyanum voucher KUN:YJB100606 chloroplast
106NC_021432TAGA314593014594112Cymbidium tracyanum voucher KUN:YJB100606 chloroplast
107NC_021433TAGA3101631017311Cymbidium mannii voucher KUN:YJB100602 chloroplast
108NC_021433TAGA311640711641711Cymbidium mannii voucher KUN:YJB100602 chloroplast
109NC_021433TAGA314003014004011Cymbidium mannii voucher KUN:YJB100602 chloroplast
110NC_021433TAGA314489514490612Cymbidium mannii voucher KUN:YJB100602 chloroplast
111NC_021437TAGA3937889379811Cunninghamia lanceolata chloroplast
112NC_021439TAGA3330713308111Pinus massoniana chloroplast
113NC_021440TAGA3341553416511Pinus taeda chloroplast
114NC_021441TAGA310475110476111Taiwania flousiana chloroplast
115NC_021449TAGA3150061501712Utricularia gibba chloroplast
116NC_021618TAGA317059717060711Grateloupia taiwanensis plastid
117NC_021637TAGA3789927900312Phaeocystis globosa strain Pg-G(A) chloroplast
118NC_021936TAGA314660214661312Najas flexilis chloroplast
119NC_000925TAGA317045317046311 Porphyra purpurea chloroplast
120NC_000932TAGA3653916540111 Arabidopsis thaliana chloroplast
121NC_001568TAGA3163821639211 Epifagus virginiana chloroplast
122NC_001631TAGA3330743308411 Pinus thunbergii chloroplast
123NC_002652TAGA36160617011 Euglena longa plastid
124NC_003386TAGA3383423835211 Psilotum nudum chloroplast
125NC_003386TAGA313802813803811 Psilotum nudum chloroplast
126NC_004543TAGA313767813768811 Anthoceros formosae chloroplast
127NC_004561TAGA312429112430212 Atropa belladonna chloroplast
128NC_004677TAGA3976079761812 Pinus koraiensis chloroplast
129NC_004799TAGA3502695027911 Cyanidioschyzon merolae strain 10D chloroplast
130NC_004993TAGA3368783688912 Calycanthus floridus var. glaucus chloroplast
131NC_006050TAGA38023803311 Nymphaea alba chloroplast
132NC_006290TAGA311803711804812 Panax ginseng chloroplast
133NC_007499TAGA3110051101511 Phalaenopsis aphrodite subsp. formosana chloroplast
134NC_007499TAGA3706477065711 Phalaenopsis aphrodite subsp. formosana chloroplast
135NC_007499TAGA313848213849312 Phalaenopsis aphrodite subsp. formosana chloroplast
136NC_007898TAGA312300512301612 Solanum lycopersicum chloroplast
137NC_007932TAGA31920193011 Porphyra yezoensis chloroplast
138NC_007943TAGA312291712292812 Solanum bulbocastanum chloroplast
139NC_007957TAGA312185612186712 Vitis vinifera chloroplast
140NC_008096TAGA312287012288112 Solanum tuberosum chloroplast
141NC_008097TAGA314866114867111 Chara vulgaris chloroplast
142NC_008235TAGA3846088461912 Populus alba chloroplast
143NC_008335TAGA39540955112 Platanus occidentalis chloroplast
144NC_008335TAGA312292612293712 Platanus occidentalis chloroplast
145NC_008372TAGA320555520556511 Stigeoclonium helveticum chloroplast
146NC_008454TAGA3700667007712 Pelargonium x hortorum chloroplast
147NC_008454TAGA310467910469012 Pelargonium x hortorum chloroplast
148NC_008457TAGA38793880412 Piper cenocladum chloroplast
149NC_008591TAGA311703911704911 Agrostis stolonifera chloroplast
150NC_008641TAGA312091212092312 Gossypium barbadense chloroplast
151NC_008788TAGA37754776411 Nuphar advena chloroplast
152NC_008796TAGA38379838911 Ranunculus macranthus chloroplast
153NC_008822TAGA3795607957011 Chlorokybus atmophyticus chloroplast
154NC_008829TAGA3732577326711 Angiopteris evecta chloroplast
155NC_009143TAGA3266692668012 Populus trichocarpa chloroplast
156NC_009143TAGA3851208513112 Populus trichocarpa chloroplast
157NC_009259TAGA31742175312 Phaseolus vulgaris chloroplast
158NC_009265TAGA3645586456811 Aethionema cordifolium chloroplast
159NC_009267TAGA3419774198812 Olimarabidopsis pumila chloroplast
160NC_009267TAGA3506655067612 Olimarabidopsis pumila chloroplast
161NC_009267TAGA3650986510811 Olimarabidopsis pumila chloroplast
162NC_009269TAGA3421834219412 Barbarea verna chloroplast
163NC_009270TAGA3417814179313 Capsella bursa-pastoris chloroplast
164NC_009271TAGA3419474195812 Crucihimalaya wallichii chloroplast
165NC_009271TAGA3651576516711 Crucihimalaya wallichii chloroplast
166NC_009273TAGA3419734198513 Lepidium virginicum chloroplast
167NC_009273TAGA3651666517611 Lepidium virginicum chloroplast
168NC_009274TAGA3408674087812 Lobularia maritima chloroplast
169NC_009274TAGA3634996350911 Lobularia maritima chloroplast
170NC_009275TAGA3420034201412 Nasturtium officinale chloroplast
171NC_009573TAGA33972398211 Rhodomonas salina chloroplast
172NC_009599TAGA311985011986112 Buxus microphylla chloroplast
173NC_009600TAGA3512645127512 Illicium oligandrum chloroplast
174NC_009601TAGA313767413768411 Dioscorea elephantipes chloroplast
175NC_009618TAGA311836511837612 Cycas taitungensis chloroplast
176NC_009681TAGA3336023361312 Leptosira terrestris chloroplast
177NC_009681TAGA3868688687912 Leptosira terrestris chloroplast
178NC_009681TAGA3947079471812 Leptosira terrestris chloroplast
179NC_009950TAGA3566625667312 Lolium perenne chloroplast
180NC_010109TAGA3397223973211 Lemna minor chloroplast
181NC_010359TAGA3228722288211 Aneura mirabilis chloroplast
182NC_010442TAGA3742767428611 Trachelium caeruleum chloroplast
183NC_010442TAGA311227211228211 Trachelium caeruleum chloroplast
184NC_010548TAGA3792867929712 Cryptomeria japonica chloroplast
185NC_011152TAGA3995929960312 Picea sitchensis chloroplast
186NC_011153TAGA3333143332411 Pinus contorta chloroplast
187NC_011154TAGA3982549826512 Pinus gerardiana chloroplast
188NC_011155TAGA3983319834212 Pinus krempfii chloroplast
189NC_011156TAGA3977229773312 Pinus lambertiana chloroplast
190NC_011158TAGA3974129742312 Pinus monophylla chloroplast
191NC_011159TAGA3982479825812 Pinus nelsonii chloroplast
192NC_011713TAGA3571705718112 Festuca arundinacea chloroplast
193NC_011828TAGA3844078441812 Trifolium subterraneum chloroplast
194NC_011930TAGA3195721958312 Keteleeria davidiana chloroplast
195NC_012099TAGA3532315324212 Pyramimonas parkeae chloroplast
196NC_013498TAGA3861198613012 Ectocarpus siliculosus chloroplast
197NC_013823TAGA31218122811 Typha latifolia chloroplast
198NC_013823TAGA315115115116212 Typha latifolia chloroplast
199NC_013991TAGA3611336114412 Phoenix dactylifera chloroplast
200NC_013991TAGA314806314807412 Phoenix dactylifera chloroplast
201NC_014056TAGA311082011083011 Oncidium Gower Ramsey chloroplast
202NC_014056TAGA313621713622812 Oncidium Gower Ramsey chloroplast
203NC_013707TAGA3614636147412 Olea europaea chloroplast