Chloroplast Motifs - Imperfect GTAT Repeats
S.No | Sequence ID | Motif | Iterations | Start | End | Tract Length | Sequence Name |
---|---|---|---|---|---|---|---|
1 | NC_008117 | GTAT | 9 | 73919 | 73954 | 36 | Zygnema circumcarinatum chloroplast |
2 | NC_020365 | GTAT | 4 | 3343 | 3357 | 15 | Calamus caryotoides plastid |
3 | NC_020366 | GTAT | 4 | 3490 | 3504 | 15 | Bismarckia nobilis plastid |
4 | NC_008335 | GTAT | 4 | 85499 | 85514 | 16 | Platanus occidentalis chloroplast |
5 | NC_011031 | GTAT | 4 | 188188 | 188202 | 15 | Oedogonium cardiacum chloroplast |
6 | NC_013991 | GTAT | 4 | 3369 | 3383 | 15 | Phoenix dactylifera chloroplast |
7 | NC_011087 | GTAT | 3 | 551797 | 551808 | 12 | Paulinella chromatophora chromatophore |
8 | NC_014582 | GTAT | 3 | 95502 | 95512 | 11 | Monsonia speciosa plastid |
9 | NC_014674 | GTAT | 3 | 101 | 111 | 11 | Castanea mollissima chloroplast |
10 | NC_014808 | GTAT | 3 | 31472 | 31482 | 11 | Thalassiosira oceanica CCMP1005 chloroplast |
11 | NC_015206 | GTAT | 3 | 30949 | 30959 | 11 | Fragaria vesca subsp. vesca chloroplast |
12 | NC_015401 | GTAT | 3 | 32991 | 33003 | 13 | Olea europaea subsp. europaea plastid |
13 | NC_015604 | GTAT | 3 | 32993 | 33005 | 13 | Olea europaea subsp. cuspidata chloroplast |
14 | NC_015605 | GTAT | 3 | 134770 | 134781 | 12 | Nelumbo lutea chloroplast |
15 | NC_015608 | GTAT | 3 | 33038 | 33050 | 13 | Olea woodiana subsp. woodiana chloroplast |
16 | NC_015610 | GTAT | 3 | 134859 | 134870 | 12 | Nelumbo nucifera chloroplast |
17 | NC_015623 | GTAT | 3 | 32999 | 33011 | 13 | Olea europaea subsp. maroccana chloroplast |
18 | NC_015803 | GTAT | 3 | 17383 | 17393 | 11 | Indocalamus longiauritus plastid |
19 | NC_015817 | GTAT | 3 | 17400 | 17410 | 11 | Phyllostachys edulis chloroplast |
20 | NC_015826 | GTAT | 3 | 17393 | 17403 | 11 | Phyllostachys nigra var. henonis chloroplast |
21 | NC_015830 | GTAT | 3 | 16956 | 16966 | 11 | Bambusa emeiensis chloroplast |
22 | NC_015831 | GTAT | 3 | 17429 | 17439 | 11 | Ferrocalamus rimosivaginus plastid |
23 | NC_016677 | GTAT | 3 | 16424 | 16434 | 11 | Leersia tisserantii plastid |
24 | NC_016699 | GTAT | 3 | 17395 | 17405 | 11 | Phyllostachys propinqua chloroplast |
25 | NC_016718 | GTAT | 3 | 16374 | 16384 | 11 | Rhynchoryza subulata plastid |
26 | NC_016733 | GTAT | 3 | 18325 | 18337 | 13 | Pedinomonas minor chloroplast |
27 | NC_016735 | GTAT | 3 | 90914 | 90925 | 12 | Fucus vesiculosus chloroplast |
28 | NC_016927 | GTAT | 3 | 16132 | 16142 | 11 | Oryza meridionalis chloroplast |
29 | NC_016986 | GTAT | 3 | 139435 | 139446 | 12 | Ginkgo biloba chloroplast |
30 | NC_017835 | GTAT | 3 | 16135 | 16145 | 11 | Oryza rufipogon chloroplast |
31 | NC_018114 | GTAT | 3 | 3305 | 3315 | 11 | Erycina pusilla chloroplast |
32 | NC_018766 | GTAT | 3 | 30958 | 30968 | 11 | Fragaria vesca subsp. bracteata chloroplast |
33 | NC_018767 | GTAT | 3 | 30961 | 30971 | 11 | Fragaria mandshurica plastid |
34 | NC_019601 | GTAT | 3 | 30921 | 30931 | 11 | Fragaria chiloensis chloroplast |
35 | NC_019602 | GTAT | 3 | 30920 | 30930 | 11 | Fragaria virginiana chloroplast |
36 | NC_019648 | GTAT | 3 | 15833 | 15843 | 11 | Festuca altissima plastid |
37 | NC_019649 | GTAT | 3 | 15107 | 15117 | 11 | Festuca ovina plastid |
38 | NC_020147 | GTAT | 3 | 38505 | 38516 | 12 | Ophioglossum californicum chloroplast |
39 | NC_020341 | GTAT | 3 | 17380 | 17390 | 11 | Arundinaria gigantea chloroplast |
40 | NC_020363 | GTAT | 3 | 47530 | 47541 | 12 | Zingiber spectabile plastid |
41 | NC_020363 | GTAT | 3 | 73721 | 73732 | 12 | Zingiber spectabile plastid |
42 | NC_020795 | GTAT | 3 | 58585 | 58595 | 11 | Chondrus crispus plastid complete genome |
43 | NC_020795 | GTAT | 3 | 71140 | 71151 | 12 | Chondrus crispus plastid complete genome |
44 | NC_021101 | GTAT | 3 | 96192 | 96202 | 11 | Francoa sonchifolia plastid |
45 | NC_021109 | GTAT | 3 | 7073 | 7084 | 12 | Pleodorina starrii plastid |
46 | NC_021372 | GTAT | 3 | 16784 | 16794 | 11 | Pharus latifolius chloroplast |
47 | NC_021425 | GTAT | 3 | 131907 | 131918 | 12 | Tetracentron sinense chloroplast |
48 | NC_021426 | GTAT | 3 | 133235 | 133246 | 12 | Trochodendron aralioides chloroplast |
49 | NC_021645 | GTAT | 3 | 71247 | 71258 | 12 | Glycine cyrtoloba voucher CSIRO:G1267 chloroplast |
50 | NC_022135 | GTAT | 3 | 15644 | 15654 | 11 | Aegilops speltoides isolate SPE0661 chloroplast |
51 | NC_001320 | GTAT | 3 | 16133 | 16143 | 11 | Oryza sativa Japonica Group plastid |
52 | NC_001666 | GTAT | 3 | 16965 | 16975 | 11 | Zea mays chloroplast |
53 | NC_002762 | GTAT | 3 | 15967 | 15977 | 11 | Triticum aestivum chloroplast |
54 | NC_004115 | GTAT | 3 | 52285 | 52295 | 11 | Chaetosphaeridium globosum chloroplast |
55 | NC_004115 | GTAT | 3 | 85809 | 85819 | 11 | Chaetosphaeridium globosum chloroplast |
56 | NC_004543 | GTAT | 3 | 3382 | 3393 | 12 | Anthoceros formosae chloroplast |
57 | NC_005878 | GTAT | 3 | 79085 | 79095 | 11 | Saccharum hybrid cultivar SP-80-3280 chloroplast |
58 | NC_005973 | GTAT | 3 | 16074 | 16084 | 11 | Oryza nivara chloroplast |
59 | NC_006084 | GTAT | 3 | 17458 | 17468 | 11 | Saccharum hybrid cultivar NCo 310 chloroplast |
60 | NC_006137 | GTAT | 3 | 24468 | 24478 | 11 | Gracilaria tenuistipitata var. liui chloroplast |
61 | NC_007932 | GTAT | 3 | 7359 | 7371 | 13 | Porphyra yezoensis chloroplast |
62 | NC_008114 | GTAT | 3 | 111651 | 111662 | 12 | Pseudendoclonium akinetum chloroplast |
63 | NC_008116 | GTAT | 3 | 59006 | 59016 | 11 | Staurastrum punctulatum chloroplast |
64 | NC_008117 | GTAT | 3 | 100323 | 100334 | 12 | Zygnema circumcarinatum chloroplast |
65 | NC_008155 | GTAT | 3 | 16067 | 16077 | 11 | Oryza sativa Indica Group chloroplast |
66 | NC_008454 | GTAT | 3 | 173296 | 173306 | 11 | Pelargonium x hortorum chloroplast |
67 | NC_008454 | GTAT | 3 | 198602 | 198612 | 11 | Pelargonium x hortorum chloroplast |
68 | NC_008602 | GTAT | 3 | 17834 | 17844 | 11 | Sorghum bicolor chloroplast |
69 | NC_009681 | GTAT | 3 | 90040 | 90051 | 12 | Leptosira terrestris chloroplast |
70 | NC_009681 | GTAT | 3 | 106618 | 106629 | 12 | Leptosira terrestris chloroplast |
71 | NC_011031 | GTAT | 3 | 81240 | 81251 | 12 | Oedogonium cardiacum chloroplast |
72 | NC_012898 | GTAT | 3 | 82062 | 82072 | 11 | Aureococcus anophagefferens chloroplast |
73 | NC_013088 | GTAT | 3 | 17041 | 17051 | 11 | Dendrocalamus latiflorus chloroplast |
74 | NC_013273 | GTAT | 3 | 17438 | 17448 | 11 | Coix lacryma-jobi chloroplast |
75 | NC_013359 | GTAT | 3 | 68636 | 68647 | 12 | Bryopsis hypnoides chloroplast |
76 | NC_013707 | GTAT | 3 | 32966 | 32978 | 13 | Olea europaea chloroplast |