ChloroMitoSSRDB 2.0 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

Back To Motif Summary

Chloroplast Motifs - Imperfect ATCA Repeats

S.NoSequence IDMotifIterationsStartEndTract LengthSequence Name
1NC_015308ATCA412515712517317Hevea brasiliensis chloroplast
2NC_011087ATCA362721262722312Paulinella chromatophora chromatophore
3NC_011087ATCA369767369768311Paulinella chromatophora chromatophore
4NC_014570ATCA315345615346813Eucalyptus grandis chloroplast
5NC_014676ATCA315386815388013Theobroma cacao chloroplast
6NC_014697ATCA315082715083913Prunus persica chloroplast
7NC_014807ATCA315240315241513Corynocarpus laevigata chloroplast
8NC_015113ATCA3908779088913Anthriscus cerefolium chloroplast
9NC_015139ATCA314665114666313Brassica rapa subsp. pekinensis chloroplast
10NC_015204ATCA3316553166511Gossypium thurberi chloroplast
11NC_015204ATCA315353915355113Gossypium thurberi chloroplast
12NC_015206ATCA314900514901713Fragaria vesca subsp. vesca chloroplast
13NC_015308ATCA315438615439813Hevea brasiliensis chloroplast
14NC_015543ATCA3807238073412Jacobaea vulgaris chloroplast
15NC_015605ATCA315650315651513Nelumbo lutea chloroplast
16NC_015610ATCA315660415661613Nelumbo nucifera chloroplast
17NC_015621ATCA3546275463711Ageratina adenophora chloroplast
18NC_015803ATCA3195371954711Indocalamus longiauritus plastid
19NC_015803ATCA3448224483211Indocalamus longiauritus plastid
20NC_015817ATCA3195671957711Phyllostachys edulis chloroplast
21NC_015817ATCA3447584476811Phyllostachys edulis chloroplast
22NC_015820ATCA3195931960311Acidosasa purpurea chloroplast
23NC_015820ATCA3448354484511Acidosasa purpurea chloroplast
24NC_015826ATCA3195481955811Phyllostachys nigra var. henonis chloroplast
25NC_015826ATCA3447314474111Phyllostachys nigra var. henonis chloroplast
26NC_015830ATCA3191661917611Bambusa emeiensis chloroplast
27NC_015830ATCA3444024441211Bambusa emeiensis chloroplast
28NC_015831ATCA3196061961611Ferrocalamus rimosivaginus plastid
29NC_015831ATCA3445024451211Ferrocalamus rimosivaginus plastid
30NC_015891ATCA3484034841412Spirodela polyrhiza chloroplast
31NC_015891ATCA316219516220713Spirodela polyrhiza chloroplast
32NC_015892ATCA3453564536611Magnolia kwangsiensis chloroplast
33NC_015892ATCA315303115304313Magnolia kwangsiensis chloroplast
34NC_015894ATCA3309753098511Wolffiella lingulata chloroplast
35NC_015894ATCA316265316266513Wolffiella lingulata chloroplast
36NC_015899ATCA316202016203213Wolffia australiana chloroplast
37NC_015983ATCA3820258203612Cucumis melo subsp. melo chloroplast
38NC_015983ATCA314936714937913Cucumis melo subsp. melo chloroplast
39NC_015990ATCA3439344394411Panicum virgatum chloroplast
40NC_015996ATCA315297815299013Pyrus pyrifolia chloroplast
41NC_016065ATCA3546735468311Taiwania cryptomerioides chloroplast DNA
42NC_016471ATCA3584155842713Neottia nidus-avis plastid
43NC_016471ATCA3837388375013Neottia nidus-avis plastid
44NC_016668ATCA3315783158811Gossypium raimondii chloroplast
45NC_016668ATCA312607012608112Gossypium raimondii chloroplast
46NC_016668ATCA315338415339613Gossypium raimondii chloroplast
47NC_016670ATCA3317163172611Gossypium darwinii chloroplast
48NC_016670ATCA312626012627112Gossypium darwinii chloroplast
49NC_016670ATCA315366215367413Gossypium darwinii chloroplast
50NC_016677ATCA3435074351711Leersia tisserantii plastid
51NC_016690ATCA3316793168911Gossypium tomentosum chloroplast
52NC_016690ATCA312630212631312Gossypium tomentosum chloroplast
53NC_016690ATCA315371715372913Gossypium tomentosum chloroplast
54NC_016692ATCA3316433165311Gossypium herbaceum subsp. africanum chloroplast
55NC_016692ATCA312618212619312Gossypium herbaceum subsp. africanum chloroplast
56NC_016692ATCA315358915360113Gossypium herbaceum subsp. africanum chloroplast
57NC_016699ATCA3195561956611Phyllostachys propinqua chloroplast
58NC_016699ATCA3447624477211Phyllostachys propinqua chloroplast
59NC_016708ATCA314600414601613Millettia pinnata chloroplast
60NC_016711ATCA3316503166011Gossypium mustelinum chloroplast
61NC_016711ATCA312619212620312Gossypium mustelinum chloroplast
62NC_016711ATCA315359015360213Gossypium mustelinum chloroplast
63NC_016712ATCA3316433165311Gossypium arboreum chloroplast
64NC_016712ATCA312610012611112Gossypium arboreum chloroplast
65NC_016712ATCA315350415351613Gossypium arboreum chloroplast
66NC_016718ATCA3434034341311Rhynchoryza subulata plastid
67NC_016729ATCA314269714270913Silene conica chloroplast
68NC_016734ATCA314602914604113Brassica napus chloroplast
69NC_016736ATCA315567515568713Ricinus communis chloroplast
70NC_016753ATCA315574115575313Colocasia esculenta chloroplast
71NC_016921ATCA3483224833211Pentactina rupicola chloroplast
72NC_016921ATCA314975414976613Pentactina rupicola chloroplast
73NC_016927ATCA3421964220611Oryza meridionalis chloroplast
74NC_017602ATCA3293962940611Elaeis guineensis chloroplast
75NC_017602ATCA314975314976513Elaeis guineensis chloroplast
76NC_017609ATCA3736027361413Phalaenopsis equestris chloroplast
77NC_017609ATCA314155814157013Phalaenopsis equestris chloroplast
78NC_017835ATCA3421874219711Oryza rufipogon chloroplast
79NC_017894ATCA3315943160411Gossypium gossypioides chloroplast
80NC_017894ATCA312614312615412Gossypium gossypioides chloroplast
81NC_017894ATCA315324715325913Gossypium gossypioides chloroplast
82NC_018109ATCA3313693137911Gossypium incanum chloroplast
83NC_018109ATCA312520112521212Gossypium incanum chloroplast
84NC_018109ATCA315249015250213Gossypium incanum chloroplast
85NC_018110ATCA3314763148611Gossypium somalense chloroplast
86NC_018110ATCA312549012550112Gossypium somalense chloroplast
87NC_018110ATCA315281215282413Gossypium somalense chloroplast
88NC_018111ATCA3315093151911Gossypium capitis-viridis chloroplast
89NC_018111ATCA312536612537712Gossypium capitis-viridis chloroplast
90NC_018111ATCA315274115275313Gossypium capitis-viridis chloroplast
91NC_018112ATCA3314763148611Gossypium areysianum chloroplast
92NC_018112ATCA312552212553312Gossypium areysianum chloroplast
93NC_018112ATCA315284515285713Gossypium areysianum chloroplast
94NC_018113ATCA3314563146611Gossypium robinsonii chloroplast
95NC_018113ATCA312583912585012Gossypium robinsonii chloroplast
96NC_018113ATCA315312215313413Gossypium robinsonii chloroplast
97NC_018114ATCA313604613605813Erycina pusilla chloroplast
98NC_018357ATCA3454334544311Magnolia denudata chloroplast
99NC_018357ATCA315339015340213Magnolia denudata chloroplast
100NC_018565ATCA314806814808013Pachycladon enysii chloroplast
101NC_019601ATCA314891114892313Fragaria chiloensis chloroplast
102NC_019602ATCA314892914894113Fragaria virginiana chloroplast
103NC_019648ATCA3172051721511Festuca altissima plastid
104NC_019648ATCA3419984200811Festuca altissima plastid
105NC_019649ATCA3162971630711Festuca ovina plastid
106NC_019650ATCA3171371714711Festuca pratensis plastid
107NC_019650ATCA3419434195311Festuca pratensis plastid
108NC_019651ATCA3170971710711Lolium multiflorum plastid
109NC_019651ATCA3418724188211Lolium multiflorum plastid
110NC_020146ATCA3649436495816Equisetum hyemale chloroplast
111NC_020316ATCA3455304554011Magnolia officinalis chloroplast
112NC_020316ATCA315352015353213Magnolia officinalis chloroplast
113NC_020317ATCA3455264553611Magnolia officinalis subsp. biloba voucher SC001 chloroplast
114NC_020317ATCA315344215345413Magnolia officinalis subsp. biloba voucher SC001 chloroplast
115NC_020318ATCA3451684517811Magnolia grandiflora voucher NJ016 chloroplast
116NC_020318ATCA315297115298313Magnolia grandiflora voucher NJ016 chloroplast
117NC_020341ATCA3195341954411Arundinaria gigantea chloroplast
118NC_020341ATCA3447524476211Arundinaria gigantea chloroplast
119NC_020361ATCA3274202743112Podocarpus totara chloroplast
120NC_020362ATCA315503215504413Heliconia collinsiana plastid
121NC_020363ATCA314913314914513Zingiber spectabile plastid
122NC_020364ATCA3292022921211Pseudophoenix vinifera plastid
123NC_020364ATCA315062615063813Pseudophoenix vinifera plastid
124NC_020365ATCA3428164282611Calamus caryotoides plastid
125NC_020365ATCA315001115002313Calamus caryotoides plastid
126NC_020366ATCA3296512966111Bismarckia nobilis plastid
127NC_020367ATCA315067915069113Dasypogon bromeliifolius plastid
128NC_020795ATCA317166517167511Chondrus crispus plastid complete genome
129NC_021075ATCA315473015474112Calliarthron tuberculosum chloroplast
130NC_021101ATCA3476844769411Francoa sonchifolia plastid
131NC_021101ATCA315061215062413Francoa sonchifolia plastid
132NC_021102ATCA314767214768413Pachycladon cheesemanii chloroplast
133NC_021372ATCA3194201943011Pharus latifolius chloroplast
134NC_021425ATCA315369615370813Tetracentron sinense chloroplast
135NC_021426ATCA3507545076411Trochodendron aralioides chloroplast
136NC_021426ATCA315503515504713Trochodendron aralioides chloroplast
137NC_021429ATCA3606686067912Cymbidium aloifolium voucher KUN:YJB100604 chloroplast
138NC_021429ATCA314960014961213Cymbidium aloifolium voucher KUN:YJB100604 chloroplast
139NC_021430ATCA314824714825913Cymbidium sinense voucher KUN:YJB100605 chloroplast
140NC_021431ATCA314833514834713Cymbidium tortisepalum voucher KUN:HJL091027 chloroplast
141NC_021432ATCA314902914904113Cymbidium tracyanum voucher KUN:YJB100606 chloroplast
142NC_021433ATCA3604126042312Cymbidium mannii voucher KUN:YJB100602 chloroplast
143NC_021433ATCA314799414800613Cymbidium mannii voucher KUN:YJB100602 chloroplast
144NC_021441ATCA3546935470311Taiwania flousiana chloroplast
145NC_021455ATCA3478564786611Prinsepia utilis plastid
146NC_021455ATCA314930814932013Prinsepia utilis plastid
147NC_021636ATCA3789327894312Glycine tomentella voucher CSIRO:G1403 chloroplast
148NC_021636ATCA312047112048212Glycine tomentella voucher CSIRO:G1403 chloroplast
149NC_021636ATCA314565214566413Glycine tomentella voucher CSIRO:G1403 chloroplast
150NC_021645ATCA312022012023112Glycine cyrtoloba voucher CSIRO:G1267 chloroplast
151NC_021645ATCA314523914525113Glycine cyrtoloba voucher CSIRO:G1267 chloroplast
152NC_021646ATCA3790547906512Glycine stenophita voucher CSIRO:G1974 chloroplast
153NC_021646ATCA312051912053012Glycine stenophita voucher CSIRO:G1974 chloroplast
154NC_021647ATCA3787407875112Glycine canescens voucher CSIRO:G1232 chloroplast
155NC_021647ATCA312026612027712Glycine canescens voucher CSIRO:G1232 chloroplast
156NC_021647ATCA314545614546813Glycine canescens voucher CSIRO:G1232 chloroplast
157NC_021648ATCA3789667897712Glycine dolichocarpa voucher CSIRO:G1134 chloroplast
158NC_021648ATCA312050712051812Glycine dolichocarpa voucher CSIRO:G1134 chloroplast
159NC_021648ATCA314572814574013Glycine dolichocarpa voucher CSIRO:G1134 chloroplast
160NC_021649ATCA3791507916112Glycine falcata voucher CSIRO:G1718 chloroplast
161NC_021649ATCA312075312076412Glycine falcata voucher CSIRO:G1718 chloroplast
162NC_021649ATCA314593914595113Glycine falcata voucher CSIRO:G1718 chloroplast
163NC_021650ATCA3789887899912Glycine syndetika voucher CSIRO:G1300 chloroplast
164NC_021650ATCA312052312053412Glycine syndetika voucher CSIRO:G1300 chloroplast
165NC_021650ATCA314571614572813Glycine syndetika voucher CSIRO:G1300 chloroplast
166NC_021760ATCA3175031751311Triticum monococcum chloroplast
167NC_021760ATCA3424404245011Triticum monococcum chloroplast
168NC_021761ATCA3175301754011Secale cereale chloroplast
169NC_021761ATCA3425024251211Secale cereale chloroplast
170NC_021762ATCA3174951750511Triticum urartu chloroplast
171NC_021762ATCA3424124242211Triticum urartu chloroplast
172NC_022099ATCA3356263563813Medicago truncatula cultivar Jemalong 2HA plastid
173NC_022099ATCA3403384034912Medicago truncatula cultivar Jemalong 2HA plastid
174NC_022100ATCA3356383565013Medicago truncatula cultivar Borung plastid
175NC_022100ATCA3403944040512Medicago truncatula cultivar Borung plastid
176NC_022133ATCA3175401755011Aegilops tauschii chloroplast
177NC_022133ATCA3423324234211Aegilops tauschii chloroplast
178NC_022135ATCA3174951750511Aegilops speltoides isolate SPE0661 chloroplast
179NC_022135ATCA3424954250511Aegilops speltoides isolate SPE0661 chloroplast
180NC_000927ATCA319103019104112 Nephroselmis olivacea chloroplast
181NC_000932ATCA3824848249512 Arabidopsis thaliana chloroplast
182NC_000932ATCA314763714764913 Arabidopsis thaliana chloroplast
183NC_001320ATCA3421924220211 Oryza sativa Japonica Group plastid
184NC_001568ATCA33618362811 Epifagus virginiana chloroplast
185NC_001666ATCA3192161922611 Zea mays chloroplast
186NC_001666ATCA3445534456311 Zea mays chloroplast
187NC_002202ATCA314503914505113 Spinacia oleracea plastid
188NC_002694ATCA314353114354313 Lotus japonicus chloroplast
189NC_002762ATCA3177781778811 Triticum aestivum chloroplast
190NC_002762ATCA3427504276011 Triticum aestivum chloroplast
191NC_003119ATCA3356263563813 Medicago truncatula chloroplast
192NC_003119ATCA3403384034912 Medicago truncatula chloroplast
193NC_004766ATCA311369911371012 Adiantum capillus-veneris chloroplast
194NC_004993ATCA311306611307712 Calycanthus floridus var. glaucus chloroplast
195NC_004993ATCA314824214825413 Calycanthus floridus var. glaucus chloroplast
196NC_005086ATCA36988699912 Amborella trichopoda chloroplast
197NC_005086ATCA311475211476211 Amborella trichopoda chloroplast
198NC_005878ATCA3813488135811 Saccharum hybrid cultivar SP-80-3280 chloroplast
199NC_005878ATCA310672710673711 Saccharum hybrid cultivar SP-80-3280 chloroplast
200NC_005973ATCA3421264213611 Oryza nivara chloroplast
201NC_006050ATCA3463714638111 Nymphaea alba chloroplast
202NC_006050ATCA3964709648213 Nymphaea alba chloroplast
203NC_006084ATCA3197211973111 Saccharum hybrid cultivar NCo 310 chloroplast
204NC_006084ATCA3451004511011 Saccharum hybrid cultivar NCo 310 chloroplast
205NC_006137ATCA317451517452511 Gracilaria tenuistipitata var. liui chloroplast
206NC_007499ATCA3735907360213 Phalaenopsis aphrodite subsp. formosana chloroplast
207NC_007499ATCA314156514157713 Phalaenopsis aphrodite subsp. formosana chloroplast
208NC_007942ATCA3782857829612 Glycine max chloroplast
209NC_007942ATCA311991711992812 Glycine max chloroplast
210NC_007942ATCA314514214515413 Glycine max chloroplast
211NC_007944ATCA3317133172311 Gossypium hirsutum chloroplast
212NC_007944ATCA312617712618812 Gossypium hirsutum chloroplast
213NC_007944ATCA315358515359713 Gossypium hirsutum chloroplast
214NC_007957ATCA315416815418013 Vitis vinifera chloroplast
215NC_007977ATCA3814638147412 Helianthus annuus chloroplast
216NC_008097ATCA3447784478811 Chara vulgaris chloroplast
217NC_008115ATCA315359915361113 Eucalyptus globulus subsp. globulus chloroplast
218NC_008155ATCA3421524216211 Oryza sativa Indica Group chloroplast
219NC_008326ATCA3454994550911 Liriodendron tulipifera chloroplast
220NC_008326ATCA315324115325313 Liriodendron tulipifera chloroplast
221NC_008334ATCA312390212391312 Citrus sinensis chloroplast
222NC_008334ATCA315283915285113 Citrus sinensis chloroplast
223NC_008335ATCA315504615505813 Platanus occidentalis chloroplast
224NC_008359ATCA315175915177113 Morus indica chloroplast
225NC_008372ATCA3104741048512 Stigeoclonium helveticum chloroplast
226NC_008456ATCA3454184542811 Drimys granadensis chloroplast
227NC_008456ATCA315352815354013 Drimys granadensis chloroplast
228NC_008590ATCA3181721818211 Hordeum vulgare subsp. vulgare chloroplast
229NC_008591ATCA3177611777111 Agrostis stolonifera chloroplast
230NC_008602ATCA3201012011111 Sorghum bicolor chloroplast
231NC_008602ATCA3453114532111 Sorghum bicolor chloroplast
232NC_008641ATCA3316673167711 Gossypium barbadense chloroplast
233NC_008641ATCA315361715362913 Gossypium barbadense chloroplast
234NC_008788ATCA3465434655311 Nuphar advena chloroplast
235NC_008796ATCA314844814846013 Ranunculus macranthus chloroplast
236NC_008829ATCA3516355164612 Angiopteris evecta chloroplast
237NC_009265ATCA314732014733213 Aethionema cordifolium chloroplast
238NC_009267ATCA314790414791613 Olimarabidopsis pumila chloroplast
239NC_009268ATCA314684414685613 Arabis hirsuta chloroplast
240NC_009269ATCA314770214771413 Barbarea verna chloroplast
241NC_009270ATCA314767014768213 Capsella bursa-pastoris chloroplast
242NC_009271ATCA314834114835313 Crucihimalaya wallichii chloroplast
243NC_009272ATCA314652114653313 Draba nemorosa chloroplast
244NC_009273ATCA314792914794113 Lepidium virginicum chloroplast
245NC_009274ATCA314583114584313 Lobularia maritima chloroplast
246NC_009275ATCA314827514828713 Nasturtium officinale chloroplast
247NC_009598ATCA315102915104113 Chloranthus spicatus chloroplast
248NC_009599ATCA315231915233113 Buxus microphylla chloroplast
249NC_009601ATCA314580414581613 Dioscorea elephantipes chloroplast
250NC_009950ATCA3171451715511 Lolium perenne chloroplast
251NC_009950ATCA3419924200211 Lolium perenne chloroplast
252NC_009962ATCA314958914960113 Ceratophyllum demersum chloroplast
253NC_010109ATCA315969215970413 Lemna minor chloroplast
254NC_010323ATCA315325415326613 Carica papaya chloroplast
255NC_010433ATCA315454715455913 Manihot esculenta chloroplast
256NC_010548ATCA3740577406711 Cryptomeria japonica chloroplast
257NC_010601ATCA3814768148712 Guizotia abyssinica chloroplast
258NC_010654ATCA3280052801511 Welwitschia mirabilis chloroplast
259NC_010776ATCA3277492775911 Fagopyrum esculentum subsp. ancestrale chloroplast
260NC_010776ATCA311293611294611 Fagopyrum esculentum subsp. ancestrale chloroplast
261NC_011032ATCA3173951740511 Brachypodium distachyon chloroplast
262NC_011713ATCA3171421715211 Festuca arundinacea chloroplast
263NC_011713ATCA3423704238011 Festuca arundinacea chloroplast
264NC_012224ATCA315723715724913 Jatropha curcas chloroplast
265NC_012615ATCA315317715318913 Megaleranthis saniculifolia chloroplast
266NC_012927ATCA3190601907011 Bambusa oldhamii chloroplast
267NC_012927ATCA3442784428811 Bambusa oldhamii chloroplast
268NC_013088ATCA3192481925811 Dendrocalamus latiflorus chloroplast
269NC_013088ATCA3444384444811 Dendrocalamus latiflorus chloroplast
270NC_013273ATCA3196911970111 Coix lacryma-jobi chloroplast
271NC_013553ATCA3825388254912 Parthenium argentatum chloroplast
272NC_013823ATCA315433515434713 Typha latifolia chloroplast
273NC_013991ATCA3293792938911 Phoenix dactylifera chloroplast
274NC_013991ATCA315121515122713 Phoenix dactylifera chloroplast
275NC_014056ATCA313933413934613 Oncidium Gower Ramsey chloroplast
276NC_014062ATCA3187741878411 Anomochloa marantoidea chloroplast