Chloroplast Motifs - Imperfect TTTTC Repeats
S.No | Sequence ID | Motif | Iterations | Start | End | Tract Length | Sequence Name |
---|---|---|---|---|---|---|---|
1 | NC_014346 | TTTTC | 5 | 191691 | 191713 | 23 | Floydiella terrestris chloroplast |
2 | NC_017609 | TTTTC | 5 | 51560 | 51582 | 23 | Phalaenopsis equestris chloroplast |
3 | NC_015204 | TTTTC | 4 | 64533 | 64552 | 20 | Gossypium thurberi chloroplast |
4 | NC_016668 | TTTTC | 4 | 64483 | 64502 | 20 | Gossypium raimondii chloroplast |
5 | NC_016670 | TTTTC | 4 | 64670 | 64689 | 20 | Gossypium darwinii chloroplast |
6 | NC_016690 | TTTTC | 4 | 64692 | 64711 | 20 | Gossypium tomentosum chloroplast |
7 | NC_016692 | TTTTC | 4 | 64558 | 64577 | 20 | Gossypium herbaceum subsp. africanum chloroplast |
8 | NC_016711 | TTTTC | 4 | 64597 | 64616 | 20 | Gossypium mustelinum chloroplast |
9 | NC_016712 | TTTTC | 4 | 64494 | 64513 | 20 | Gossypium arboreum chloroplast |
10 | NC_016753 | TTTTC | 4 | 85424 | 85442 | 19 | Colocasia esculenta chloroplast |
11 | NC_017894 | TTTTC | 4 | 64531 | 64550 | 20 | Gossypium gossypioides chloroplast |
12 | NC_019650 | TTTTC | 4 | 76625 | 76644 | 20 | Festuca pratensis plastid |
13 | NC_020098 | TTTTC | 4 | 129594 | 129612 | 19 | Tectona grandis chloroplast |
14 | NC_021372 | TTTTC | 4 | 79797 | 79815 | 19 | Pharus latifolius chloroplast |
15 | NC_021761 | TTTTC | 4 | 77309 | 77327 | 19 | Secale cereale chloroplast |
16 | NC_002693 | TTTTC | 4 | 35474 | 35492 | 19 | Oenothera elata subsp. hookeri plastid plastome I |
17 | NC_005087 | TTTTC | 4 | 108791 | 108810 | 20 | Physcomitrella patens subsp. patens chloroplast |
18 | NC_007944 | TTTTC | 4 | 64564 | 64583 | 20 | Gossypium hirsutum chloroplast |
19 | NC_008114 | TTTTC | 4 | 117083 | 117102 | 20 | Pseudendoclonium akinetum chloroplast |
20 | NC_008590 | TTTTC | 4 | 77680 | 77699 | 20 | Hordeum vulgare subsp. vulgare chloroplast |
21 | NC_008641 | TTTTC | 4 | 64613 | 64632 | 20 | Gossypium barbadense chloroplast |
22 | NC_010358 | TTTTC | 4 | 35019 | 35037 | 19 | Oenothera argillicola chloroplast |
23 | NC_010360 | TTTTC | 4 | 35332 | 35350 | 19 | Oenothera glazioviana chloroplast |
24 | NC_010361 | TTTTC | 4 | 35422 | 35440 | 19 | Oenothera biennis chloroplast |
25 | NC_010362 | TTTTC | 4 | 35276 | 35295 | 20 | Oenothera parviflora chloroplast |
26 | NC_011032 | TTTTC | 4 | 76041 | 76059 | 19 | Brachypodium distachyon chloroplast |
27 | NC_011152 | TTTTC | 4 | 51447 | 51466 | 20 | Picea sitchensis chloroplast |
28 | NC_011713 | TTTTC | 4 | 77308 | 77326 | 19 | Festuca arundinacea chloroplast |
29 | NC_014346 | TTTTC | 3 | 79569 | 79583 | 15 | Floydiella terrestris chloroplast |
30 | NC_014346 | TTTTC | 3 | 170554 | 170567 | 14 | Floydiella terrestris chloroplast |
31 | NC_014346 | TTTTC | 3 | 174658 | 174671 | 14 | Floydiella terrestris chloroplast |
32 | NC_014346 | TTTTC | 3 | 194175 | 194188 | 14 | Floydiella terrestris chloroplast |
33 | NC_014346 | TTTTC | 3 | 244787 | 244800 | 14 | Floydiella terrestris chloroplast |
34 | NC_014346 | TTTTC | 3 | 252800 | 252813 | 14 | Floydiella terrestris chloroplast |
35 | NC_014346 | TTTTC | 3 | 265361 | 265375 | 15 | Floydiella terrestris chloroplast |
36 | NC_014346 | TTTTC | 3 | 290918 | 290932 | 15 | Floydiella terrestris chloroplast |
37 | NC_014346 | TTTTC | 3 | 368046 | 368059 | 14 | Floydiella terrestris chloroplast |
38 | NC_014346 | TTTTC | 3 | 454645 | 454658 | 14 | Floydiella terrestris chloroplast |
39 | NC_014346 | TTTTC | 3 | 459969 | 459983 | 15 | Floydiella terrestris chloroplast |
40 | NC_014569 | TTTTC | 3 | 115933 | 115948 | 16 | Erodium texanum plastid |
41 | NC_014699 | TTTTC | 3 | 23047 | 23060 | 14 | Equisetum arvense chloroplast |
42 | NC_014699 | TTTTC | 3 | 82358 | 82371 | 14 | Equisetum arvense chloroplast |
43 | NC_014807 | TTTTC | 3 | 6124 | 6139 | 16 | Corynocarpus laevigata chloroplast |
44 | NC_014807 | TTTTC | 3 | 128480 | 128493 | 14 | Corynocarpus laevigata chloroplast |
45 | NC_014807 | TTTTC | 3 | 131274 | 131288 | 15 | Corynocarpus laevigata chloroplast |
46 | NC_015083 | TTTTC | 3 | 67527 | 67540 | 14 | Erodium carvifolium chloroplast |
47 | NC_015359 | TTTTC | 3 | 64105 | 64118 | 14 | Chlorella variabilis plastid |
48 | NC_015645 | TTTTC | 3 | 84634 | 84647 | 14 | Schizomeris leibleinii chloroplast |
49 | NC_015645 | TTTTC | 3 | 180311 | 180326 | 16 | Schizomeris leibleinii chloroplast |
50 | NC_015803 | TTTTC | 3 | 79780 | 79794 | 15 | Indocalamus longiauritus plastid |
51 | NC_015817 | TTTTC | 3 | 79733 | 79747 | 15 | Phyllostachys edulis chloroplast |
52 | NC_015820 | TTTTC | 3 | 79797 | 79811 | 15 | Acidosasa purpurea chloroplast |
53 | NC_015826 | TTTTC | 3 | 79740 | 79754 | 15 | Phyllostachys nigra var. henonis chloroplast |
54 | NC_015831 | TTTTC | 3 | 79558 | 79572 | 15 | Ferrocalamus rimosivaginus plastid |
55 | NC_015891 | TTTTC | 3 | 33192 | 33206 | 15 | Spirodela polyrhiza chloroplast |
56 | NC_015892 | TTTTC | 3 | 128584 | 128597 | 14 | Magnolia kwangsiensis chloroplast |
57 | NC_015899 | TTTTC | 3 | 6811 | 6824 | 14 | Wolffia australiana chloroplast |
58 | NC_015983 | TTTTC | 3 | 125374 | 125387 | 14 | Cucumis melo subsp. melo chloroplast |
59 | NC_016468 | TTTTC | 3 | 115223 | 115236 | 14 | Boea hygrometrica chloroplast |
60 | NC_016668 | TTTTC | 3 | 74606 | 74619 | 14 | Gossypium raimondii chloroplast |
61 | NC_016699 | TTTTC | 3 | 79735 | 79749 | 15 | Phyllostachys propinqua chloroplast |
62 | NC_016728 | TTTTC | 3 | 38776 | 38790 | 15 | Silene noctiflora chloroplast |
63 | NC_016732 | TTTTC | 3 | 262931 | 262945 | 15 | Dunaliella salina chloroplast |
64 | NC_016736 | TTTTC | 3 | 35804 | 35818 | 15 | Ricinus communis chloroplast |
65 | NC_016921 | TTTTC | 3 | 66736 | 66750 | 15 | Pentactina rupicola chloroplast |
66 | NC_017006 | TTTTC | 3 | 119411 | 119425 | 15 | Mankyua chejuensis chloroplast |
67 | NC_017602 | TTTTC | 3 | 125499 | 125513 | 15 | Elaeis guineensis chloroplast |
68 | NC_017602 | TTTTC | 3 | 128047 | 128061 | 15 | Elaeis guineensis chloroplast |
69 | NC_017609 | TTTTC | 3 | 64417 | 64431 | 15 | Phalaenopsis equestris chloroplast |
70 | NC_017609 | TTTTC | 3 | 120464 | 120478 | 15 | Phalaenopsis equestris chloroplast |
71 | NC_017894 | TTTTC | 3 | 74681 | 74695 | 15 | Gossypium gossypioides chloroplast |
72 | NC_018051 | TTTTC | 3 | 131032 | 131046 | 15 | Vigna unguiculata chloroplast |
73 | NC_018109 | TTTTC | 3 | 130605 | 130618 | 14 | Gossypium incanum chloroplast |
74 | NC_018110 | TTTTC | 3 | 74052 | 74066 | 15 | Gossypium somalense chloroplast |
75 | NC_018110 | TTTTC | 3 | 130913 | 130926 | 14 | Gossypium somalense chloroplast |
76 | NC_018112 | TTTTC | 3 | 74084 | 74098 | 15 | Gossypium areysianum chloroplast |
77 | NC_018112 | TTTTC | 3 | 130946 | 130959 | 14 | Gossypium areysianum chloroplast |
78 | NC_018357 | TTTTC | 3 | 128817 | 128830 | 14 | Magnolia denudata chloroplast |
79 | NC_018523 | TTTTC | 3 | 31089 | 31102 | 14 | Saccharina japonica chloroplast |
80 | NC_018523 | TTTTC | 3 | 41899 | 41912 | 14 | Saccharina japonica chloroplast |
81 | NC_018541 | TTTTC | 3 | 79306 | 79319 | 14 | Elodea canadensis chloroplast |
82 | NC_018552 | TTTTC | 3 | 44959 | 44972 | 14 | Capsicum annuum chloroplast |
83 | NC_019628 | TTTTC | 3 | 77265 | 77278 | 14 | Pellia endiviifolia chloroplast |
84 | NC_019649 | TTTTC | 3 | 76965 | 76979 | 15 | Festuca ovina plastid |
85 | NC_019650 | TTTTC | 3 | 78570 | 78584 | 15 | Festuca pratensis plastid |
86 | NC_019651 | TTTTC | 3 | 78483 | 78497 | 15 | Lolium multiflorum plastid |
87 | NC_020014 | TTTTC | 3 | 57692 | 57706 | 15 | Nannochloropsis gaditana chloroplast |
88 | NC_020092 | TTTTC | 3 | 43586 | 43600 | 15 | Chrysanthemum x morifolium chloroplast |
89 | NC_020316 | TTTTC | 3 | 128949 | 128962 | 14 | Magnolia officinalis chloroplast |
90 | NC_020317 | TTTTC | 3 | 128909 | 128922 | 14 | Magnolia officinalis subsp. biloba voucher SC001 chloroplast |
91 | NC_020318 | TTTTC | 3 | 128455 | 128468 | 14 | Magnolia grandiflora voucher NJ016 chloroplast |
92 | NC_020364 | TTTTC | 3 | 131936 | 131949 | 14 | Pseudophoenix vinifera plastid |
93 | NC_020438 | TTTTC | 3 | 154973 | 154986 | 14 | Gonium pectorale chloroplast |
94 | NC_020607 | TTTTC | 3 | 43586 | 43600 | 15 | Artemisia frigida chloroplast |
95 | NC_021091 | TTTTC | 3 | 131473 | 131487 | 15 | Vigna angularis chloroplast DNA |
96 | NC_021121 | TTTTC | 3 | 53542 | 53556 | 15 | Ardisia polysticta chloroplast |
97 | NC_021429 | TTTTC | 3 | 64464 | 64477 | 14 | Cymbidium aloifolium voucher KUN:YJB100604 chloroplast |
98 | NC_021432 | TTTTC | 3 | 122657 | 122671 | 15 | Cymbidium tracyanum voucher KUN:YJB100606 chloroplast |
99 | NC_021433 | TTTTC | 3 | 122319 | 122333 | 15 | Cymbidium mannii voucher KUN:YJB100602 chloroplast |
100 | NC_021449 | TTTTC | 3 | 69907 | 69921 | 15 | Utricularia gibba chloroplast |
101 | NC_021636 | TTTTC | 3 | 133450 | 133464 | 15 | Glycine tomentella voucher CSIRO:G1403 chloroplast |
102 | NC_021637 | TTTTC | 3 | 2549 | 2562 | 14 | Phaeocystis globosa strain Pg-G(A) chloroplast |
103 | NC_021645 | TTTTC | 3 | 133043 | 133057 | 15 | Glycine cyrtoloba voucher CSIRO:G1267 chloroplast |
104 | NC_021646 | TTTTC | 3 | 133336 | 133350 | 15 | Glycine stenophita voucher CSIRO:G1974 chloroplast |
105 | NC_021647 | TTTTC | 3 | 133253 | 133267 | 15 | Glycine canescens voucher CSIRO:G1232 chloroplast |
106 | NC_021648 | TTTTC | 3 | 133525 | 133539 | 15 | Glycine dolichocarpa voucher CSIRO:G1134 chloroplast |
107 | NC_021649 | TTTTC | 3 | 133733 | 133747 | 15 | Glycine falcata voucher CSIRO:G1718 chloroplast |
108 | NC_021650 | TTTTC | 3 | 133513 | 133527 | 15 | Glycine syndetika voucher CSIRO:G1300 chloroplast |
109 | NC_021761 | TTTTC | 3 | 44565 | 44579 | 15 | Secale cereale chloroplast |
110 | NC_001319 | TTTTC | 3 | 74115 | 74128 | 14 | Marchantia polymorpha chloroplast |
111 | NC_001675 | TTTTC | 3 | 11256 | 11270 | 15 | Cyanophora paradoxa cyanelle |
112 | NC_001865 | TTTTC | 3 | 21098 | 21111 | 14 | Chlorella vulgaris chloroplast |
113 | NC_001865 | TTTTC | 3 | 140022 | 140036 | 15 | Chlorella vulgaris chloroplast |
114 | NC_002693 | TTTTC | 3 | 89038 | 89051 | 14 | Oenothera elata subsp. hookeri plastid plastome I |
115 | NC_003386 | TTTTC | 3 | 40086 | 40100 | 15 | Psilotum nudum chloroplast |
116 | NC_003386 | TTTTC | 3 | 70341 | 70354 | 14 | Psilotum nudum chloroplast |
117 | NC_005087 | TTTTC | 3 | 106037 | 106051 | 15 | Physcomitrella patens subsp. patens chloroplast |
118 | NC_007144 | TTTTC | 3 | 70004 | 70017 | 14 | Cucumis sativus chloroplast |
119 | NC_007144 | TTTTC | 3 | 125029 | 125042 | 14 | Cucumis sativus chloroplast |
120 | NC_007499 | TTTTC | 3 | 64311 | 64325 | 15 | Phalaenopsis aphrodite subsp. formosana chloroplast |
121 | NC_007499 | TTTTC | 3 | 120549 | 120563 | 15 | Phalaenopsis aphrodite subsp. formosana chloroplast |
122 | NC_007942 | TTTTC | 3 | 132950 | 132964 | 15 | Glycine max chloroplast |
123 | NC_007957 | TTTTC | 3 | 135696 | 135710 | 15 | Vitis vinifera chloroplast |
124 | NC_008101 | TTTTC | 3 | 11160 | 11173 | 14 | Scenedesmus obliquus chloroplast |
125 | NC_008101 | TTTTC | 3 | 57119 | 57132 | 14 | Scenedesmus obliquus chloroplast |
126 | NC_008101 | TTTTC | 3 | 145780 | 145793 | 14 | Scenedesmus obliquus chloroplast |
127 | NC_008334 | TTTTC | 3 | 128322 | 128335 | 14 | Citrus sinensis chloroplast |
128 | NC_008454 | TTTTC | 3 | 112402 | 112416 | 15 | Pelargonium x hortorum chloroplast |
129 | NC_008454 | TTTTC | 3 | 207958 | 207971 | 14 | Pelargonium x hortorum chloroplast |
130 | NC_009259 | TTTTC | 3 | 33481 | 33495 | 15 | Phaseolus vulgaris chloroplast |
131 | NC_009259 | TTTTC | 3 | 40706 | 40720 | 15 | Phaseolus vulgaris chloroplast |
132 | NC_009259 | TTTTC | 3 | 130116 | 130130 | 15 | Phaseolus vulgaris chloroplast |
133 | NC_009265 | TTTTC | 3 | 127358 | 127371 | 14 | Aethionema cordifolium chloroplast |
134 | NC_009266 | TTTTC | 3 | 127444 | 127457 | 14 | Aethionema grandiflorum chloroplast |
135 | NC_009267 | TTTTC | 3 | 45639 | 45653 | 15 | Olimarabidopsis pumila chloroplast |
136 | NC_009270 | TTTTC | 3 | 127740 | 127753 | 14 | Capsella bursa-pastoris chloroplast |
137 | NC_009275 | TTTTC | 3 | 41601 | 41614 | 14 | Nasturtium officinale chloroplast |
138 | NC_009275 | TTTTC | 3 | 128309 | 128322 | 14 | Nasturtium officinale chloroplast |
139 | NC_009601 | TTTTC | 3 | 27886 | 27901 | 16 | Dioscorea elephantipes chloroplast |
140 | NC_009766 | TTTTC | 3 | 96660 | 96673 | 14 | Cuscuta reflexa chloroplast |
141 | NC_009962 | TTTTC | 3 | 99175 | 99190 | 16 | Ceratophyllum demersum chloroplast |
142 | NC_010360 | TTTTC | 3 | 89287 | 89300 | 14 | Oenothera glazioviana chloroplast |
143 | NC_010361 | TTTTC | 3 | 88660 | 88673 | 14 | Oenothera biennis chloroplast |
144 | NC_010362 | TTTTC | 3 | 87404 | 87417 | 14 | Oenothera parviflora chloroplast |
145 | NC_010772 | TTTTC | 3 | 85523 | 85536 | 14 | Heterosigma akashiwo chloroplast |
146 | NC_011031 | TTTTC | 3 | 156839 | 156853 | 15 | Oedogonium cardiacum chloroplast |
147 | NC_011032 | TTTTC | 3 | 87641 | 87656 | 16 | Brachypodium distachyon chloroplast |
148 | NC_011163 | TTTTC | 3 | 34769 | 34783 | 15 | Cicer arietinum chloroplast |
149 | NC_011713 | TTTTC | 3 | 79276 | 79289 | 14 | Festuca arundinacea chloroplast |
150 | NC_011828 | TTTTC | 3 | 86984 | 86997 | 14 | Trifolium subterraneum chloroplast |
151 | NC_011954 | TTTTC | 3 | 84136 | 84150 | 15 | Ephedra equisetina chloroplast |
152 | NC_012052 | TTTTC | 3 | 95605 | 95618 | 14 | Syntrichia ruralis chloroplast |
153 | NC_012224 | TTTTC | 3 | 121754 | 121767 | 14 | Jatropha curcas chloroplast |
154 | NC_012978 | TTTTC | 3 | 96218 | 96233 | 16 | Parachlorella kessleri chloroplast |
155 | NC_012978 | TTTTC | 3 | 102126 | 102140 | 15 | Parachlorella kessleri chloroplast |
156 | NC_012978 | TTTTC | 3 | 115678 | 115692 | 15 | Parachlorella kessleri chloroplast |
157 | NC_013843 | TTTTC | 3 | 131056 | 131070 | 15 | Vigna radiata chloroplast |
158 | NC_013991 | TTTTC | 3 | 54120 | 54134 | 15 | Phoenix dactylifera chloroplast |
159 | NC_014062 | TTTTC | 3 | 21349 | 21363 | 15 | Anomochloa marantoidea chloroplast |