ChloroMitoSSRDB 2.0 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

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Chloroplast Motifs - Imperfect TTTTC Repeats

S.NoSequence IDMotifIterationsStartEndTract LengthSequence Name
1NC_014346TTTTC519169119171323Floydiella terrestris chloroplast
2NC_017609TTTTC5515605158223Phalaenopsis equestris chloroplast
3NC_015204TTTTC4645336455220Gossypium thurberi chloroplast
4NC_016668TTTTC4644836450220Gossypium raimondii chloroplast
5NC_016670TTTTC4646706468920Gossypium darwinii chloroplast
6NC_016690TTTTC4646926471120Gossypium tomentosum chloroplast
7NC_016692TTTTC4645586457720Gossypium herbaceum subsp. africanum chloroplast
8NC_016711TTTTC4645976461620Gossypium mustelinum chloroplast
9NC_016712TTTTC4644946451320Gossypium arboreum chloroplast
10NC_016753TTTTC4854248544219Colocasia esculenta chloroplast
11NC_017894TTTTC4645316455020Gossypium gossypioides chloroplast
12NC_019650TTTTC4766257664420Festuca pratensis plastid
13NC_020098TTTTC412959412961219Tectona grandis chloroplast
14NC_021372TTTTC4797977981519Pharus latifolius chloroplast
15NC_021761TTTTC4773097732719Secale cereale chloroplast
16NC_002693TTTTC4354743549219 Oenothera elata subsp. hookeri plastid plastome I
17NC_005087TTTTC410879110881020 Physcomitrella patens subsp. patens chloroplast
18NC_007944TTTTC4645646458320 Gossypium hirsutum chloroplast
19NC_008114TTTTC411708311710220 Pseudendoclonium akinetum chloroplast
20NC_008590TTTTC4776807769920 Hordeum vulgare subsp. vulgare chloroplast
21NC_008641TTTTC4646136463220 Gossypium barbadense chloroplast
22NC_010358TTTTC4350193503719 Oenothera argillicola chloroplast
23NC_010360TTTTC4353323535019 Oenothera glazioviana chloroplast
24NC_010361TTTTC4354223544019 Oenothera biennis chloroplast
25NC_010362TTTTC4352763529520 Oenothera parviflora chloroplast
26NC_011032TTTTC4760417605919 Brachypodium distachyon chloroplast
27NC_011152TTTTC4514475146620 Picea sitchensis chloroplast
28NC_011713TTTTC4773087732619 Festuca arundinacea chloroplast
29NC_014346TTTTC3795697958315Floydiella terrestris chloroplast
30NC_014346TTTTC317055417056714Floydiella terrestris chloroplast
31NC_014346TTTTC317465817467114Floydiella terrestris chloroplast
32NC_014346TTTTC319417519418814Floydiella terrestris chloroplast
33NC_014346TTTTC324478724480014Floydiella terrestris chloroplast
34NC_014346TTTTC325280025281314Floydiella terrestris chloroplast
35NC_014346TTTTC326536126537515Floydiella terrestris chloroplast
36NC_014346TTTTC329091829093215Floydiella terrestris chloroplast
37NC_014346TTTTC336804636805914Floydiella terrestris chloroplast
38NC_014346TTTTC345464545465814Floydiella terrestris chloroplast
39NC_014346TTTTC345996945998315Floydiella terrestris chloroplast
40NC_014569TTTTC311593311594816Erodium texanum plastid
41NC_014699TTTTC3230472306014Equisetum arvense chloroplast
42NC_014699TTTTC3823588237114Equisetum arvense chloroplast
43NC_014807TTTTC36124613916Corynocarpus laevigata chloroplast
44NC_014807TTTTC312848012849314Corynocarpus laevigata chloroplast
45NC_014807TTTTC313127413128815Corynocarpus laevigata chloroplast
46NC_015083TTTTC3675276754014Erodium carvifolium chloroplast
47NC_015359TTTTC3641056411814Chlorella variabilis plastid
48NC_015645TTTTC3846348464714Schizomeris leibleinii chloroplast
49NC_015645TTTTC318031118032616Schizomeris leibleinii chloroplast
50NC_015803TTTTC3797807979415Indocalamus longiauritus plastid
51NC_015817TTTTC3797337974715Phyllostachys edulis chloroplast
52NC_015820TTTTC3797977981115Acidosasa purpurea chloroplast
53NC_015826TTTTC3797407975415Phyllostachys nigra var. henonis chloroplast
54NC_015831TTTTC3795587957215Ferrocalamus rimosivaginus plastid
55NC_015891TTTTC3331923320615Spirodela polyrhiza chloroplast
56NC_015892TTTTC312858412859714Magnolia kwangsiensis chloroplast
57NC_015899TTTTC36811682414Wolffia australiana chloroplast
58NC_015983TTTTC312537412538714Cucumis melo subsp. melo chloroplast
59NC_016468TTTTC311522311523614Boea hygrometrica chloroplast
60NC_016668TTTTC3746067461914Gossypium raimondii chloroplast
61NC_016699TTTTC3797357974915Phyllostachys propinqua chloroplast
62NC_016728TTTTC3387763879015Silene noctiflora chloroplast
63NC_016732TTTTC326293126294515Dunaliella salina chloroplast
64NC_016736TTTTC3358043581815Ricinus communis chloroplast
65NC_016921TTTTC3667366675015Pentactina rupicola chloroplast
66NC_017006TTTTC311941111942515Mankyua chejuensis chloroplast
67NC_017602TTTTC312549912551315Elaeis guineensis chloroplast
68NC_017602TTTTC312804712806115Elaeis guineensis chloroplast
69NC_017609TTTTC3644176443115Phalaenopsis equestris chloroplast
70NC_017609TTTTC312046412047815Phalaenopsis equestris chloroplast
71NC_017894TTTTC3746817469515Gossypium gossypioides chloroplast
72NC_018051TTTTC313103213104615Vigna unguiculata chloroplast
73NC_018109TTTTC313060513061814Gossypium incanum chloroplast
74NC_018110TTTTC3740527406615Gossypium somalense chloroplast
75NC_018110TTTTC313091313092614Gossypium somalense chloroplast
76NC_018112TTTTC3740847409815Gossypium areysianum chloroplast
77NC_018112TTTTC313094613095914Gossypium areysianum chloroplast
78NC_018357TTTTC312881712883014Magnolia denudata chloroplast
79NC_018523TTTTC3310893110214Saccharina japonica chloroplast
80NC_018523TTTTC3418994191214Saccharina japonica chloroplast
81NC_018541TTTTC3793067931914Elodea canadensis chloroplast
82NC_018552TTTTC3449594497214Capsicum annuum chloroplast
83NC_019628TTTTC3772657727814Pellia endiviifolia chloroplast
84NC_019649TTTTC3769657697915Festuca ovina plastid
85NC_019650TTTTC3785707858415Festuca pratensis plastid
86NC_019651TTTTC3784837849715Lolium multiflorum plastid
87NC_020014TTTTC3576925770615Nannochloropsis gaditana chloroplast
88NC_020092TTTTC3435864360015Chrysanthemum x morifolium chloroplast
89NC_020316TTTTC312894912896214Magnolia officinalis chloroplast
90NC_020317TTTTC312890912892214Magnolia officinalis subsp. biloba voucher SC001 chloroplast
91NC_020318TTTTC312845512846814Magnolia grandiflora voucher NJ016 chloroplast
92NC_020364TTTTC313193613194914Pseudophoenix vinifera plastid
93NC_020438TTTTC315497315498614Gonium pectorale chloroplast
94NC_020607TTTTC3435864360015Artemisia frigida chloroplast
95NC_021091TTTTC313147313148715Vigna angularis chloroplast DNA
96NC_021121TTTTC3535425355615Ardisia polysticta chloroplast
97NC_021429TTTTC3644646447714Cymbidium aloifolium voucher KUN:YJB100604 chloroplast
98NC_021432TTTTC312265712267115Cymbidium tracyanum voucher KUN:YJB100606 chloroplast
99NC_021433TTTTC312231912233315Cymbidium mannii voucher KUN:YJB100602 chloroplast
100NC_021449TTTTC3699076992115Utricularia gibba chloroplast
101NC_021636TTTTC313345013346415Glycine tomentella voucher CSIRO:G1403 chloroplast
102NC_021637TTTTC32549256214Phaeocystis globosa strain Pg-G(A) chloroplast
103NC_021645TTTTC313304313305715Glycine cyrtoloba voucher CSIRO:G1267 chloroplast
104NC_021646TTTTC313333613335015Glycine stenophita voucher CSIRO:G1974 chloroplast
105NC_021647TTTTC313325313326715Glycine canescens voucher CSIRO:G1232 chloroplast
106NC_021648TTTTC313352513353915Glycine dolichocarpa voucher CSIRO:G1134 chloroplast
107NC_021649TTTTC313373313374715Glycine falcata voucher CSIRO:G1718 chloroplast
108NC_021650TTTTC313351313352715Glycine syndetika voucher CSIRO:G1300 chloroplast
109NC_021761TTTTC3445654457915Secale cereale chloroplast
110NC_001319TTTTC3741157412814 Marchantia polymorpha chloroplast
111NC_001675TTTTC3112561127015 Cyanophora paradoxa cyanelle
112NC_001865TTTTC3210982111114 Chlorella vulgaris chloroplast
113NC_001865TTTTC314002214003615 Chlorella vulgaris chloroplast
114NC_002693TTTTC3890388905114 Oenothera elata subsp. hookeri plastid plastome I
115NC_003386TTTTC3400864010015 Psilotum nudum chloroplast
116NC_003386TTTTC3703417035414 Psilotum nudum chloroplast
117NC_005087TTTTC310603710605115 Physcomitrella patens subsp. patens chloroplast
118NC_007144TTTTC3700047001714 Cucumis sativus chloroplast
119NC_007144TTTTC312502912504214 Cucumis sativus chloroplast
120NC_007499TTTTC3643116432515 Phalaenopsis aphrodite subsp. formosana chloroplast
121NC_007499TTTTC312054912056315 Phalaenopsis aphrodite subsp. formosana chloroplast
122NC_007942TTTTC313295013296415 Glycine max chloroplast
123NC_007957TTTTC313569613571015 Vitis vinifera chloroplast
124NC_008101TTTTC3111601117314 Scenedesmus obliquus chloroplast
125NC_008101TTTTC3571195713214 Scenedesmus obliquus chloroplast
126NC_008101TTTTC314578014579314 Scenedesmus obliquus chloroplast
127NC_008334TTTTC312832212833514 Citrus sinensis chloroplast
128NC_008454TTTTC311240211241615 Pelargonium x hortorum chloroplast
129NC_008454TTTTC320795820797114 Pelargonium x hortorum chloroplast
130NC_009259TTTTC3334813349515 Phaseolus vulgaris chloroplast
131NC_009259TTTTC3407064072015 Phaseolus vulgaris chloroplast
132NC_009259TTTTC313011613013015 Phaseolus vulgaris chloroplast
133NC_009265TTTTC312735812737114 Aethionema cordifolium chloroplast
134NC_009266TTTTC312744412745714 Aethionema grandiflorum chloroplast
135NC_009267TTTTC3456394565315 Olimarabidopsis pumila chloroplast
136NC_009270TTTTC312774012775314 Capsella bursa-pastoris chloroplast
137NC_009275TTTTC3416014161414 Nasturtium officinale chloroplast
138NC_009275TTTTC312830912832214 Nasturtium officinale chloroplast
139NC_009601TTTTC3278862790116 Dioscorea elephantipes chloroplast
140NC_009766TTTTC3966609667314 Cuscuta reflexa chloroplast
141NC_009962TTTTC3991759919016 Ceratophyllum demersum chloroplast
142NC_010360TTTTC3892878930014 Oenothera glazioviana chloroplast
143NC_010361TTTTC3886608867314 Oenothera biennis chloroplast
144NC_010362TTTTC3874048741714 Oenothera parviflora chloroplast
145NC_010772TTTTC3855238553614 Heterosigma akashiwo chloroplast
146NC_011031TTTTC315683915685315 Oedogonium cardiacum chloroplast
147NC_011032TTTTC3876418765616 Brachypodium distachyon chloroplast
148NC_011163TTTTC3347693478315 Cicer arietinum chloroplast
149NC_011713TTTTC3792767928914 Festuca arundinacea chloroplast
150NC_011828TTTTC3869848699714 Trifolium subterraneum chloroplast
151NC_011954TTTTC3841368415015 Ephedra equisetina chloroplast
152NC_012052TTTTC3956059561814 Syntrichia ruralis chloroplast
153NC_012224TTTTC312175412176714 Jatropha curcas chloroplast
154NC_012978TTTTC3962189623316 Parachlorella kessleri chloroplast
155NC_012978TTTTC310212610214015 Parachlorella kessleri chloroplast
156NC_012978TTTTC311567811569215 Parachlorella kessleri chloroplast
157NC_013843TTTTC313105613107015 Vigna radiata chloroplast
158NC_013991TTTTC3541205413415 Phoenix dactylifera chloroplast
159NC_014062TTTTC3213492136315 Anomochloa marantoidea chloroplast