Chloroplast Motifs - Imperfect AATC Repeats
S.No | Sequence ID | Motif | Iterations | Start | End | Tract Length | Sequence Name |
---|---|---|---|---|---|---|---|
1 | NC_015204 | AATC | 5 | 54284 | 54302 | 19 | Gossypium thurberi chloroplast |
2 | NC_016670 | AATC | 5 | 54411 | 54429 | 19 | Gossypium darwinii chloroplast |
3 | NC_016690 | AATC | 5 | 54433 | 54451 | 19 | Gossypium tomentosum chloroplast |
4 | NC_016692 | AATC | 5 | 54308 | 54326 | 19 | Gossypium herbaceum subsp. africanum chloroplast |
5 | NC_016711 | AATC | 5 | 54338 | 54356 | 19 | Gossypium mustelinum chloroplast |
6 | NC_016712 | AATC | 5 | 54244 | 54262 | 19 | Gossypium arboreum chloroplast |
7 | NC_007944 | AATC | 5 | 54317 | 54335 | 19 | Gossypium hirsutum chloroplast |
8 | NC_008117 | AATC | 5 | 21598 | 21621 | 24 | Zygnema circumcarinatum chloroplast |
9 | NC_008641 | AATC | 5 | 54376 | 54394 | 19 | Gossypium barbadense chloroplast |
10 | NC_015543 | AATC | 4 | 76892 | 76907 | 16 | Jacobaea vulgaris chloroplast |
11 | NC_015621 | AATC | 4 | 78283 | 78298 | 16 | Ageratina adenophora chloroplast |
12 | NC_017609 | AATC | 4 | 80067 | 80082 | 16 | Phalaenopsis equestris chloroplast |
13 | NC_018114 | AATC | 4 | 78097 | 78112 | 16 | Erycina pusilla chloroplast |
14 | NC_020092 | AATC | 4 | 76873 | 76888 | 16 | Chrysanthemum x morifolium chloroplast |
15 | NC_020320 | AATC | 4 | 76830 | 76845 | 16 | Chrysanthemum indicum voucher HeN001 chloroplast |
16 | NC_020607 | AATC | 4 | 76829 | 76844 | 16 | Artemisia frigida chloroplast |
17 | NC_021429 | AATC | 4 | 79806 | 79821 | 16 | Cymbidium aloifolium voucher KUN:YJB100604 chloroplast |
18 | NC_021430 | AATC | 4 | 79089 | 79104 | 16 | Cymbidium sinense voucher KUN:YJB100605 chloroplast |
19 | NC_021431 | AATC | 4 | 79142 | 79157 | 16 | Cymbidium tortisepalum voucher KUN:HJL091027 chloroplast |
20 | NC_021432 | AATC | 4 | 79194 | 79209 | 16 | Cymbidium tracyanum voucher KUN:YJB100606 chloroplast |
21 | NC_021433 | AATC | 4 | 79321 | 79336 | 16 | Cymbidium mannii voucher KUN:YJB100602 chloroplast |
22 | NC_021936 | AATC | 4 | 82563 | 82578 | 16 | Najas flexilis chloroplast |
23 | NC_007499 | AATC | 4 | 80035 | 80050 | 16 | Phalaenopsis aphrodite subsp. formosana chloroplast |
24 | NC_007578 | AATC | 4 | 78167 | 78182 | 16 | Lactuca sativa chloroplast |
25 | NC_007977 | AATC | 4 | 77596 | 77611 | 16 | Helianthus annuus chloroplast |
26 | NC_010601 | AATC | 4 | 77653 | 77668 | 16 | Guizotia abyssinica chloroplast |
27 | NC_013553 | AATC | 4 | 78700 | 78715 | 16 | Parthenium argentatum chloroplast |
28 | NC_014056 | AATC | 4 | 76595 | 76610 | 16 | Oncidium Gower Ramsey chloroplast |
29 | NC_011087 | AATC | 3 | 39588 | 39599 | 12 | Paulinella chromatophora chromatophore |
30 | NC_011087 | AATC | 3 | 53309 | 53321 | 13 | Paulinella chromatophora chromatophore |
31 | NC_011087 | AATC | 3 | 105408 | 105419 | 12 | Paulinella chromatophora chromatophore |
32 | NC_011087 | AATC | 3 | 1004457 | 1004468 | 12 | Paulinella chromatophora chromatophore |
33 | NC_014340 | AATC | 3 | 79398 | 79409 | 12 | Chromera velia strain CCMP2878 chloroplast |
34 | NC_014340 | AATC | 3 | 94450 | 94460 | 11 | Chromera velia strain CCMP2878 chloroplast |
35 | NC_014570 | AATC | 3 | 126419 | 126430 | 12 | Eucalyptus grandis chloroplast |
36 | NC_014573 | AATC | 3 | 137058 | 137069 | 12 | Geranium palmatum plastid |
37 | NC_014592 | AATC | 3 | 59991 | 60001 | 11 | Cheilanthes lindheimeri chloroplast |
38 | NC_014674 | AATC | 3 | 127638 | 127649 | 12 | Castanea mollissima chloroplast |
39 | NC_014675 | AATC | 3 | 24177 | 24187 | 11 | Isoetes flaccida chloroplast |
40 | NC_014676 | AATC | 3 | 8706 | 8716 | 11 | Theobroma cacao chloroplast |
41 | NC_014676 | AATC | 3 | 68620 | 68631 | 12 | Theobroma cacao chloroplast |
42 | NC_014697 | AATC | 3 | 123961 | 123972 | 12 | Prunus persica chloroplast |
43 | NC_014807 | AATC | 3 | 150216 | 150226 | 11 | Corynocarpus laevigata chloroplast |
44 | NC_015113 | AATC | 3 | 122057 | 122068 | 12 | Anthriscus cerefolium chloroplast |
45 | NC_015204 | AATC | 3 | 8758 | 8768 | 11 | Gossypium thurberi chloroplast |
46 | NC_015206 | AATC | 3 | 122278 | 122289 | 12 | Fragaria vesca subsp. vesca chloroplast |
47 | NC_015308 | AATC | 3 | 54911 | 54921 | 11 | Hevea brasiliensis chloroplast |
48 | NC_015308 | AATC | 3 | 127277 | 127288 | 12 | Hevea brasiliensis chloroplast |
49 | NC_015401 | AATC | 3 | 122841 | 122852 | 12 | Olea europaea subsp. europaea plastid |
50 | NC_015402 | AATC | 3 | 37273 | 37284 | 12 | Ptilidium pulcherrimum chloroplast |
51 | NC_015604 | AATC | 3 | 122839 | 122850 | 12 | Olea europaea subsp. cuspidata chloroplast |
52 | NC_015608 | AATC | 3 | 122934 | 122945 | 12 | Olea woodiana subsp. woodiana chloroplast |
53 | NC_015623 | AATC | 3 | 122862 | 122873 | 12 | Olea europaea subsp. maroccana chloroplast |
54 | NC_015891 | AATC | 3 | 18822 | 18833 | 12 | Spirodela polyrhiza chloroplast |
55 | NC_015892 | AATC | 3 | 126192 | 126203 | 12 | Magnolia kwangsiensis chloroplast |
56 | NC_015983 | AATC | 3 | 147195 | 147205 | 11 | Cucumis melo subsp. melo chloroplast |
57 | NC_015990 | AATC | 3 | 114965 | 114976 | 12 | Panicum virgatum chloroplast |
58 | NC_015996 | AATC | 3 | 126073 | 126084 | 12 | Pyrus pyrifolia chloroplast |
59 | NC_016668 | AATC | 3 | 8696 | 8706 | 11 | Gossypium raimondii chloroplast |
60 | NC_016670 | AATC | 3 | 8761 | 8771 | 11 | Gossypium darwinii chloroplast |
61 | NC_016690 | AATC | 3 | 8758 | 8768 | 11 | Gossypium tomentosum chloroplast |
62 | NC_016692 | AATC | 3 | 8745 | 8755 | 11 | Gossypium herbaceum subsp. africanum chloroplast |
63 | NC_016711 | AATC | 3 | 8751 | 8761 | 11 | Gossypium mustelinum chloroplast |
64 | NC_016712 | AATC | 3 | 8746 | 8756 | 11 | Gossypium arboreum chloroplast |
65 | NC_016727 | AATC | 3 | 76580 | 76591 | 12 | Silene vulgaris chloroplast |
66 | NC_016728 | AATC | 3 | 73725 | 73736 | 12 | Silene noctiflora chloroplast |
67 | NC_016729 | AATC | 3 | 73710 | 73721 | 12 | Silene conica chloroplast |
68 | NC_016730 | AATC | 3 | 77019 | 77030 | 12 | Silene latifolia chloroplast |
69 | NC_016731 | AATC | 3 | 89663 | 89674 | 12 | Synedra acus chloroplast |
70 | NC_016736 | AATC | 3 | 128870 | 128881 | 12 | Ricinus communis chloroplast |
71 | NC_016921 | AATC | 3 | 122927 | 122938 | 12 | Pentactina rupicola chloroplast |
72 | NC_017006 | AATC | 3 | 28323 | 28333 | 11 | Mankyua chejuensis chloroplast |
73 | NC_017602 | AATC | 3 | 17029 | 17039 | 11 | Elaeis guineensis chloroplast |
74 | NC_017609 | AATC | 3 | 46230 | 46241 | 12 | Phalaenopsis equestris chloroplast |
75 | NC_017754 | AATC | 3 | 38772 | 38783 | 12 | Eutreptiella gymnastica plastid |
76 | NC_017894 | AATC | 3 | 8715 | 8725 | 11 | Gossypium gossypioides chloroplast |
77 | NC_018051 | AATC | 3 | 106430 | 106442 | 13 | Vigna unguiculata chloroplast |
78 | NC_018109 | AATC | 3 | 8661 | 8671 | 11 | Gossypium incanum chloroplast |
79 | NC_018110 | AATC | 3 | 8712 | 8722 | 11 | Gossypium somalense chloroplast |
80 | NC_018111 | AATC | 3 | 8757 | 8767 | 11 | Gossypium capitis-viridis chloroplast |
81 | NC_018112 | AATC | 3 | 8712 | 8722 | 11 | Gossypium areysianum chloroplast |
82 | NC_018113 | AATC | 3 | 8876 | 8886 | 11 | Gossypium robinsonii chloroplast |
83 | NC_018357 | AATC | 3 | 126427 | 126438 | 12 | Magnolia denudata chloroplast |
84 | NC_018766 | AATC | 3 | 122327 | 122338 | 12 | Fragaria vesca subsp. bracteata chloroplast |
85 | NC_018767 | AATC | 3 | 122348 | 122359 | 12 | Fragaria mandshurica plastid |
86 | NC_019601 | AATC | 3 | 122201 | 122212 | 12 | Fragaria chiloensis chloroplast |
87 | NC_019602 | AATC | 3 | 122219 | 122230 | 12 | Fragaria virginiana chloroplast |
88 | NC_019616 | AATC | 3 | 155075 | 155086 | 12 | Vaccinium macrocarpon plastid |
89 | NC_020014 | AATC | 3 | 32630 | 32641 | 12 | Nannochloropsis gaditana chloroplast |
90 | NC_020092 | AATC | 3 | 46880 | 46891 | 12 | Chrysanthemum x morifolium chloroplast |
91 | NC_020098 | AATC | 3 | 121251 | 121262 | 12 | Tectona grandis chloroplast |
92 | NC_020146 | AATC | 3 | 23700 | 23710 | 11 | Equisetum hyemale chloroplast |
93 | NC_020152 | AATC | 3 | 127980 | 127991 | 12 | Quercus rubra plastid |
94 | NC_020316 | AATC | 3 | 126558 | 126569 | 12 | Magnolia officinalis chloroplast |
95 | NC_020317 | AATC | 3 | 126514 | 126525 | 12 | Magnolia officinalis subsp. biloba voucher SC001 chloroplast |
96 | NC_020318 | AATC | 3 | 126064 | 126075 | 12 | Magnolia grandiflora voucher NJ016 chloroplast |
97 | NC_020320 | AATC | 3 | 46911 | 46922 | 12 | Chrysanthemum indicum voucher HeN001 chloroplast |
98 | NC_020361 | AATC | 3 | 88067 | 88078 | 12 | Podocarpus totara chloroplast |
99 | NC_020364 | AATC | 3 | 16783 | 16793 | 11 | Pseudophoenix vinifera plastid |
100 | NC_020365 | AATC | 3 | 16477 | 16487 | 11 | Calamus caryotoides plastid |
101 | NC_020366 | AATC | 3 | 16872 | 16882 | 11 | Bismarckia nobilis plastid |
102 | NC_020366 | AATC | 3 | 52944 | 52955 | 12 | Bismarckia nobilis plastid |
103 | NC_020607 | AATC | 3 | 46894 | 46905 | 12 | Artemisia frigida chloroplast |
104 | NC_020607 | AATC | 3 | 118817 | 118828 | 12 | Artemisia frigida chloroplast |
105 | NC_021075 | AATC | 3 | 149488 | 149498 | 11 | Calliarthron tuberculosum chloroplast |
106 | NC_021109 | AATC | 3 | 130645 | 130655 | 11 | Pleodorina starrii plastid |
107 | NC_021189 | AATC | 3 | 104579 | 104590 | 12 | Pyropia haitanensis voucher PH-38 chloroplast |
108 | NC_021425 | AATC | 3 | 126849 | 126860 | 12 | Tetracentron sinense chloroplast |
109 | NC_021438 | AATC | 3 | 33949 | 33959 | 11 | Gnetum montanum chloroplast |
110 | NC_021449 | AATC | 3 | 119653 | 119664 | 12 | Utricularia gibba chloroplast |
111 | NC_021455 | AATC | 3 | 122604 | 122615 | 12 | Prinsepia utilis plastid |
112 | NC_021618 | AATC | 3 | 143521 | 143531 | 11 | Grateloupia taiwanensis plastid |
113 | NC_022136 | AATC | 3 | 110081 | 110092 | 12 | Lygodium japonicum chloroplast |
114 | NC_000926 | AATC | 3 | 53090 | 53101 | 12 | Guillardia theta chloroplast |
115 | NC_000926 | AATC | 3 | 66504 | 66515 | 12 | Guillardia theta chloroplast |
116 | NC_000927 | AATC | 3 | 708 | 719 | 12 | Nephroselmis olivacea chloroplast |
117 | NC_000927 | AATC | 3 | 110784 | 110795 | 12 | Nephroselmis olivacea chloroplast |
118 | NC_001666 | AATC | 3 | 115672 | 115683 | 12 | Zea mays chloroplast |
119 | NC_002693 | AATC | 3 | 32657 | 32667 | 11 | Oenothera elata subsp. hookeri plastid plastome I |
120 | NC_002693 | AATC | 3 | 126476 | 126487 | 12 | Oenothera elata subsp. hookeri plastid plastome I |
121 | NC_003386 | AATC | 3 | 25116 | 25126 | 11 | Psilotum nudum chloroplast |
122 | NC_004543 | AATC | 3 | 41028 | 41039 | 12 | Anthoceros formosae chloroplast |
123 | NC_004799 | AATC | 3 | 117622 | 117632 | 11 | Cyanidioschyzon merolae strain 10D chloroplast |
124 | NC_004993 | AATC | 3 | 122086 | 122097 | 12 | Calycanthus floridus var. glaucus chloroplast |
125 | NC_005086 | AATC | 3 | 7796 | 7806 | 11 | Amborella trichopoda chloroplast |
126 | NC_006290 | AATC | 3 | 123391 | 123402 | 12 | Panax ginseng chloroplast |
127 | NC_007499 | AATC | 3 | 46095 | 46106 | 12 | Phalaenopsis aphrodite subsp. formosana chloroplast |
128 | NC_007944 | AATC | 3 | 8745 | 8755 | 11 | Gossypium hirsutum chloroplast |
129 | NC_007957 | AATC | 3 | 68383 | 68394 | 12 | Vitis vinifera chloroplast |
130 | NC_007957 | AATC | 3 | 127317 | 127328 | 12 | Vitis vinifera chloroplast |
131 | NC_008097 | AATC | 3 | 32506 | 32517 | 12 | Chara vulgaris chloroplast |
132 | NC_008097 | AATC | 3 | 109227 | 109237 | 11 | Chara vulgaris chloroplast |
133 | NC_008097 | AATC | 3 | 140597 | 140609 | 13 | Chara vulgaris chloroplast |
134 | NC_008097 | AATC | 3 | 174639 | 174650 | 12 | Chara vulgaris chloroplast |
135 | NC_008097 | AATC | 3 | 180122 | 180134 | 13 | Chara vulgaris chloroplast |
136 | NC_008115 | AATC | 3 | 126575 | 126586 | 12 | Eucalyptus globulus subsp. globulus chloroplast |
137 | NC_008235 | AATC | 3 | 114745 | 114756 | 12 | Populus alba chloroplast |
138 | NC_008325 | AATC | 3 | 122310 | 122321 | 12 | Daucus carota chloroplast |
139 | NC_008326 | AATC | 3 | 126367 | 126378 | 12 | Liriodendron tulipifera chloroplast |
140 | NC_008335 | AATC | 3 | 128565 | 128576 | 12 | Platanus occidentalis chloroplast |
141 | NC_008336 | AATC | 3 | 16204 | 16215 | 12 | Nandina domestica chloroplast |
142 | NC_008407 | AATC | 3 | 132974 | 132985 | 12 | Jasminum nudiflorum chloroplast |
143 | NC_008408 | AATC | 3 | 60533 | 60543 | 11 | Bigelowiella natans plastid |
144 | NC_008456 | AATC | 3 | 119508 | 119519 | 12 | Drimys granadensis chloroplast |
145 | NC_008456 | AATC | 3 | 126611 | 126622 | 12 | Drimys granadensis chloroplast |
146 | NC_008588 | AATC | 3 | 31301 | 31312 | 12 | Phaeodactylum tricornutum chloroplast |
147 | NC_008589 | AATC | 3 | 116299 | 116310 | 12 | Thalassiosira pseudonana chloroplast |
148 | NC_008589 | AATC | 3 | 128488 | 128499 | 12 | Thalassiosira pseudonana chloroplast |
149 | NC_008641 | AATC | 3 | 8765 | 8775 | 11 | Gossypium barbadense chloroplast |
150 | NC_008829 | AATC | 3 | 28474 | 28484 | 11 | Angiopteris evecta chloroplast |
151 | NC_009265 | AATC | 3 | 27384 | 27395 | 12 | Aethionema cordifolium chloroplast |
152 | NC_009266 | AATC | 3 | 27421 | 27432 | 12 | Aethionema grandiflorum chloroplast |
153 | NC_009598 | AATC | 3 | 86453 | 86464 | 12 | Chloranthus spicatus chloroplast |
154 | NC_009599 | AATC | 3 | 67294 | 67305 | 12 | Buxus microphylla chloroplast |
155 | NC_009599 | AATC | 3 | 125315 | 125326 | 12 | Buxus microphylla chloroplast |
156 | NC_009600 | AATC | 3 | 18413 | 18424 | 12 | Illicium oligandrum chloroplast |
157 | NC_009681 | AATC | 3 | 158428 | 158438 | 11 | Leptosira terrestris chloroplast |
158 | NC_009766 | AATC | 3 | 101180 | 101191 | 12 | Cuscuta reflexa chloroplast |
159 | NC_009949 | AATC | 3 | 41309 | 41319 | 11 | Cuscuta obtusiflora chloroplast |
160 | NC_009962 | AATC | 3 | 71647 | 71658 | 12 | Ceratophyllum demersum chloroplast |
161 | NC_009962 | AATC | 3 | 122890 | 122901 | 12 | Ceratophyllum demersum chloroplast |
162 | NC_009963 | AATC | 3 | 105085 | 105096 | 12 | Cuscuta exaltata chloroplast |
163 | NC_010109 | AATC | 3 | 17936 | 17947 | 12 | Lemna minor chloroplast |
164 | NC_010323 | AATC | 3 | 126394 | 126405 | 12 | Carica papaya chloroplast |
165 | NC_010358 | AATC | 3 | 32155 | 32165 | 11 | Oenothera argillicola chloroplast |
166 | NC_010358 | AATC | 3 | 125972 | 125983 | 12 | Oenothera argillicola chloroplast |
167 | NC_010359 | AATC | 3 | 87122 | 87133 | 12 | Aneura mirabilis chloroplast |
168 | NC_010360 | AATC | 3 | 32512 | 32522 | 11 | Oenothera glazioviana chloroplast |
169 | NC_010360 | AATC | 3 | 126570 | 126581 | 12 | Oenothera glazioviana chloroplast |
170 | NC_010361 | AATC | 3 | 32603 | 32613 | 11 | Oenothera biennis chloroplast |
171 | NC_010361 | AATC | 3 | 126052 | 126063 | 12 | Oenothera biennis chloroplast |
172 | NC_010362 | AATC | 3 | 32428 | 32438 | 11 | Oenothera parviflora chloroplast |
173 | NC_010362 | AATC | 3 | 124789 | 124800 | 12 | Oenothera parviflora chloroplast |
174 | NC_010433 | AATC | 3 | 54678 | 54688 | 11 | Manihot esculenta chloroplast |
175 | NC_010433 | AATC | 3 | 127507 | 127518 | 12 | Manihot esculenta chloroplast |
176 | NC_010442 | AATC | 3 | 138245 | 138256 | 12 | Trachelium caeruleum chloroplast |
177 | NC_011031 | AATC | 3 | 58297 | 58307 | 11 | Oedogonium cardiacum chloroplast |
178 | NC_011954 | AATC | 3 | 40547 | 40557 | 11 | Ephedra equisetina chloroplast |
179 | NC_011954 | AATC | 3 | 107330 | 107341 | 12 | Ephedra equisetina chloroplast |
180 | NC_012224 | AATC | 3 | 130414 | 130425 | 12 | Jatropha curcas chloroplast |
181 | NC_012615 | AATC | 3 | 126242 | 126253 | 12 | Megaleranthis saniculifolia chloroplast |
182 | NC_012818 | AATC | 3 | 3664 | 3674 | 11 | Alsophila spinulosa chloroplast |
183 | NC_012898 | AATC | 3 | 66475 | 66486 | 12 | Aureococcus anophagefferens chloroplast |
184 | NC_013991 | AATC | 3 | 17248 | 17258 | 11 | Phoenix dactylifera chloroplast |
185 | NC_014056 | AATC | 3 | 63060 | 63071 | 12 | Oncidium Gower Ramsey chloroplast |
186 | NC_014062 | AATC | 3 | 44344 | 44354 | 11 | Anomochloa marantoidea chloroplast |
187 | NC_014063 | AATC | 3 | 4533 | 4544 | 12 | Lathyrus sativus chloroplast |
188 | NC_013707 | AATC | 3 | 122831 | 122842 | 12 | Olea europaea chloroplast |