ChloroMitoSSRDB 2.0 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

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Chloroplast Motifs - Imperfect AATC Repeats

S.NoSequence IDMotifIterationsStartEndTract LengthSequence Name
1NC_015204AATC5542845430219Gossypium thurberi chloroplast
2NC_016670AATC5544115442919Gossypium darwinii chloroplast
3NC_016690AATC5544335445119Gossypium tomentosum chloroplast
4NC_016692AATC5543085432619Gossypium herbaceum subsp. africanum chloroplast
5NC_016711AATC5543385435619Gossypium mustelinum chloroplast
6NC_016712AATC5542445426219Gossypium arboreum chloroplast
7NC_007944AATC5543175433519 Gossypium hirsutum chloroplast
8NC_008117AATC5215982162124 Zygnema circumcarinatum chloroplast
9NC_008641AATC5543765439419 Gossypium barbadense chloroplast
10NC_015543AATC4768927690716Jacobaea vulgaris chloroplast
11NC_015621AATC4782837829816Ageratina adenophora chloroplast
12NC_017609AATC4800678008216Phalaenopsis equestris chloroplast
13NC_018114AATC4780977811216Erycina pusilla chloroplast
14NC_020092AATC4768737688816Chrysanthemum x morifolium chloroplast
15NC_020320AATC4768307684516Chrysanthemum indicum voucher HeN001 chloroplast
16NC_020607AATC4768297684416Artemisia frigida chloroplast
17NC_021429AATC4798067982116Cymbidium aloifolium voucher KUN:YJB100604 chloroplast
18NC_021430AATC4790897910416Cymbidium sinense voucher KUN:YJB100605 chloroplast
19NC_021431AATC4791427915716Cymbidium tortisepalum voucher KUN:HJL091027 chloroplast
20NC_021432AATC4791947920916Cymbidium tracyanum voucher KUN:YJB100606 chloroplast
21NC_021433AATC4793217933616Cymbidium mannii voucher KUN:YJB100602 chloroplast
22NC_021936AATC4825638257816Najas flexilis chloroplast
23NC_007499AATC4800358005016 Phalaenopsis aphrodite subsp. formosana chloroplast
24NC_007578AATC4781677818216 Lactuca sativa chloroplast
25NC_007977AATC4775967761116 Helianthus annuus chloroplast
26NC_010601AATC4776537766816 Guizotia abyssinica chloroplast
27NC_013553AATC4787007871516 Parthenium argentatum chloroplast
28NC_014056AATC4765957661016 Oncidium Gower Ramsey chloroplast
29NC_011087AATC3395883959912Paulinella chromatophora chromatophore
30NC_011087AATC3533095332113Paulinella chromatophora chromatophore
31NC_011087AATC310540810541912Paulinella chromatophora chromatophore
32NC_011087AATC31004457100446812Paulinella chromatophora chromatophore
33NC_014340AATC3793987940912Chromera velia strain CCMP2878 chloroplast
34NC_014340AATC3944509446011Chromera velia strain CCMP2878 chloroplast
35NC_014570AATC312641912643012Eucalyptus grandis chloroplast
36NC_014573AATC313705813706912Geranium palmatum plastid
37NC_014592AATC3599916000111Cheilanthes lindheimeri chloroplast
38NC_014674AATC312763812764912Castanea mollissima chloroplast
39NC_014675AATC3241772418711Isoetes flaccida chloroplast
40NC_014676AATC38706871611Theobroma cacao chloroplast
41NC_014676AATC3686206863112Theobroma cacao chloroplast
42NC_014697AATC312396112397212Prunus persica chloroplast
43NC_014807AATC315021615022611Corynocarpus laevigata chloroplast
44NC_015113AATC312205712206812Anthriscus cerefolium chloroplast
45NC_015204AATC38758876811Gossypium thurberi chloroplast
46NC_015206AATC312227812228912Fragaria vesca subsp. vesca chloroplast
47NC_015308AATC3549115492111Hevea brasiliensis chloroplast
48NC_015308AATC312727712728812Hevea brasiliensis chloroplast
49NC_015401AATC312284112285212Olea europaea subsp. europaea plastid
50NC_015402AATC3372733728412Ptilidium pulcherrimum chloroplast
51NC_015604AATC312283912285012Olea europaea subsp. cuspidata chloroplast
52NC_015608AATC312293412294512Olea woodiana subsp. woodiana chloroplast
53NC_015623AATC312286212287312Olea europaea subsp. maroccana chloroplast
54NC_015891AATC3188221883312Spirodela polyrhiza chloroplast
55NC_015892AATC312619212620312Magnolia kwangsiensis chloroplast
56NC_015983AATC314719514720511Cucumis melo subsp. melo chloroplast
57NC_015990AATC311496511497612Panicum virgatum chloroplast
58NC_015996AATC312607312608412Pyrus pyrifolia chloroplast
59NC_016668AATC38696870611Gossypium raimondii chloroplast
60NC_016670AATC38761877111Gossypium darwinii chloroplast
61NC_016690AATC38758876811Gossypium tomentosum chloroplast
62NC_016692AATC38745875511Gossypium herbaceum subsp. africanum chloroplast
63NC_016711AATC38751876111Gossypium mustelinum chloroplast
64NC_016712AATC38746875611Gossypium arboreum chloroplast
65NC_016727AATC3765807659112Silene vulgaris chloroplast
66NC_016728AATC3737257373612Silene noctiflora chloroplast
67NC_016729AATC3737107372112Silene conica chloroplast
68NC_016730AATC3770197703012Silene latifolia chloroplast
69NC_016731AATC3896638967412Synedra acus chloroplast
70NC_016736AATC312887012888112Ricinus communis chloroplast
71NC_016921AATC312292712293812Pentactina rupicola chloroplast
72NC_017006AATC3283232833311Mankyua chejuensis chloroplast
73NC_017602AATC3170291703911Elaeis guineensis chloroplast
74NC_017609AATC3462304624112Phalaenopsis equestris chloroplast
75NC_017754AATC3387723878312Eutreptiella gymnastica plastid
76NC_017894AATC38715872511Gossypium gossypioides chloroplast
77NC_018051AATC310643010644213Vigna unguiculata chloroplast
78NC_018109AATC38661867111Gossypium incanum chloroplast
79NC_018110AATC38712872211Gossypium somalense chloroplast
80NC_018111AATC38757876711Gossypium capitis-viridis chloroplast
81NC_018112AATC38712872211Gossypium areysianum chloroplast
82NC_018113AATC38876888611Gossypium robinsonii chloroplast
83NC_018357AATC312642712643812Magnolia denudata chloroplast
84NC_018766AATC312232712233812Fragaria vesca subsp. bracteata chloroplast
85NC_018767AATC312234812235912Fragaria mandshurica plastid
86NC_019601AATC312220112221212Fragaria chiloensis chloroplast
87NC_019602AATC312221912223012Fragaria virginiana chloroplast
88NC_019616AATC315507515508612Vaccinium macrocarpon plastid
89NC_020014AATC3326303264112Nannochloropsis gaditana chloroplast
90NC_020092AATC3468804689112Chrysanthemum x morifolium chloroplast
91NC_020098AATC312125112126212Tectona grandis chloroplast
92NC_020146AATC3237002371011Equisetum hyemale chloroplast
93NC_020152AATC312798012799112Quercus rubra plastid
94NC_020316AATC312655812656912Magnolia officinalis chloroplast
95NC_020317AATC312651412652512Magnolia officinalis subsp. biloba voucher SC001 chloroplast
96NC_020318AATC312606412607512Magnolia grandiflora voucher NJ016 chloroplast
97NC_020320AATC3469114692212Chrysanthemum indicum voucher HeN001 chloroplast
98NC_020361AATC3880678807812Podocarpus totara chloroplast
99NC_020364AATC3167831679311Pseudophoenix vinifera plastid
100NC_020365AATC3164771648711Calamus caryotoides plastid
101NC_020366AATC3168721688211Bismarckia nobilis plastid
102NC_020366AATC3529445295512Bismarckia nobilis plastid
103NC_020607AATC3468944690512Artemisia frigida chloroplast
104NC_020607AATC311881711882812Artemisia frigida chloroplast
105NC_021075AATC314948814949811Calliarthron tuberculosum chloroplast
106NC_021109AATC313064513065511Pleodorina starrii plastid
107NC_021189AATC310457910459012Pyropia haitanensis voucher PH-38 chloroplast
108NC_021425AATC312684912686012Tetracentron sinense chloroplast
109NC_021438AATC3339493395911Gnetum montanum chloroplast
110NC_021449AATC311965311966412Utricularia gibba chloroplast
111NC_021455AATC312260412261512Prinsepia utilis plastid
112NC_021618AATC314352114353111Grateloupia taiwanensis plastid
113NC_022136AATC311008111009212Lygodium japonicum chloroplast
114NC_000926AATC3530905310112 Guillardia theta chloroplast
115NC_000926AATC3665046651512 Guillardia theta chloroplast
116NC_000927AATC370871912 Nephroselmis olivacea chloroplast
117NC_000927AATC311078411079512 Nephroselmis olivacea chloroplast
118NC_001666AATC311567211568312 Zea mays chloroplast
119NC_002693AATC3326573266711 Oenothera elata subsp. hookeri plastid plastome I
120NC_002693AATC312647612648712 Oenothera elata subsp. hookeri plastid plastome I
121NC_003386AATC3251162512611 Psilotum nudum chloroplast
122NC_004543AATC3410284103912 Anthoceros formosae chloroplast
123NC_004799AATC311762211763211 Cyanidioschyzon merolae strain 10D chloroplast
124NC_004993AATC312208612209712 Calycanthus floridus var. glaucus chloroplast
125NC_005086AATC37796780611 Amborella trichopoda chloroplast
126NC_006290AATC312339112340212 Panax ginseng chloroplast
127NC_007499AATC3460954610612 Phalaenopsis aphrodite subsp. formosana chloroplast
128NC_007944AATC38745875511 Gossypium hirsutum chloroplast
129NC_007957AATC3683836839412 Vitis vinifera chloroplast
130NC_007957AATC312731712732812 Vitis vinifera chloroplast
131NC_008097AATC3325063251712 Chara vulgaris chloroplast
132NC_008097AATC310922710923711 Chara vulgaris chloroplast
133NC_008097AATC314059714060913 Chara vulgaris chloroplast
134NC_008097AATC317463917465012 Chara vulgaris chloroplast
135NC_008097AATC318012218013413 Chara vulgaris chloroplast
136NC_008115AATC312657512658612 Eucalyptus globulus subsp. globulus chloroplast
137NC_008235AATC311474511475612 Populus alba chloroplast
138NC_008325AATC312231012232112 Daucus carota chloroplast
139NC_008326AATC312636712637812 Liriodendron tulipifera chloroplast
140NC_008335AATC312856512857612 Platanus occidentalis chloroplast
141NC_008336AATC3162041621512 Nandina domestica chloroplast
142NC_008407AATC313297413298512 Jasminum nudiflorum chloroplast
143NC_008408AATC3605336054311 Bigelowiella natans plastid
144NC_008456AATC311950811951912 Drimys granadensis chloroplast
145NC_008456AATC312661112662212 Drimys granadensis chloroplast
146NC_008588AATC3313013131212 Phaeodactylum tricornutum chloroplast
147NC_008589AATC311629911631012 Thalassiosira pseudonana chloroplast
148NC_008589AATC312848812849912 Thalassiosira pseudonana chloroplast
149NC_008641AATC38765877511 Gossypium barbadense chloroplast
150NC_008829AATC3284742848411 Angiopteris evecta chloroplast
151NC_009265AATC3273842739512 Aethionema cordifolium chloroplast
152NC_009266AATC3274212743212 Aethionema grandiflorum chloroplast
153NC_009598AATC3864538646412 Chloranthus spicatus chloroplast
154NC_009599AATC3672946730512 Buxus microphylla chloroplast
155NC_009599AATC312531512532612 Buxus microphylla chloroplast
156NC_009600AATC3184131842412 Illicium oligandrum chloroplast
157NC_009681AATC315842815843811 Leptosira terrestris chloroplast
158NC_009766AATC310118010119112 Cuscuta reflexa chloroplast
159NC_009949AATC3413094131911 Cuscuta obtusiflora chloroplast
160NC_009962AATC3716477165812 Ceratophyllum demersum chloroplast
161NC_009962AATC312289012290112 Ceratophyllum demersum chloroplast
162NC_009963AATC310508510509612 Cuscuta exaltata chloroplast
163NC_010109AATC3179361794712 Lemna minor chloroplast
164NC_010323AATC312639412640512 Carica papaya chloroplast
165NC_010358AATC3321553216511 Oenothera argillicola chloroplast
166NC_010358AATC312597212598312 Oenothera argillicola chloroplast
167NC_010359AATC3871228713312 Aneura mirabilis chloroplast
168NC_010360AATC3325123252211 Oenothera glazioviana chloroplast
169NC_010360AATC312657012658112 Oenothera glazioviana chloroplast
170NC_010361AATC3326033261311 Oenothera biennis chloroplast
171NC_010361AATC312605212606312 Oenothera biennis chloroplast
172NC_010362AATC3324283243811 Oenothera parviflora chloroplast
173NC_010362AATC312478912480012 Oenothera parviflora chloroplast
174NC_010433AATC3546785468811 Manihot esculenta chloroplast
175NC_010433AATC312750712751812 Manihot esculenta chloroplast
176NC_010442AATC313824513825612 Trachelium caeruleum chloroplast
177NC_011031AATC3582975830711 Oedogonium cardiacum chloroplast
178NC_011954AATC3405474055711 Ephedra equisetina chloroplast
179NC_011954AATC310733010734112 Ephedra equisetina chloroplast
180NC_012224AATC313041413042512 Jatropha curcas chloroplast
181NC_012615AATC312624212625312 Megaleranthis saniculifolia chloroplast
182NC_012818AATC33664367411 Alsophila spinulosa chloroplast
183NC_012898AATC3664756648612 Aureococcus anophagefferens chloroplast
184NC_013991AATC3172481725811 Phoenix dactylifera chloroplast
185NC_014056AATC3630606307112 Oncidium Gower Ramsey chloroplast
186NC_014062AATC3443444435411 Anomochloa marantoidea chloroplast
187NC_014063AATC34533454412 Lathyrus sativus chloroplast
188NC_013707AATC312283112284212 Olea europaea chloroplast