Chloroplast Motifs - Imperfect GGA Repeats
S.No | Sequence ID | Motif | Iterations | Start | End | Tract Length | Sequence Name |
---|---|---|---|---|---|---|---|
1 | NC_013086 | GGA | 13 | 47057 | 47096 | 40 | Selaginella moellendorffii plastid |
2 | NC_008454 | GGA | 7 | 170295 | 170315 | 21 | Pelargonium x hortorum chloroplast |
3 | NC_018569 | GGA | 5 | 69970 | 69984 | 15 | Trebouxiophyceae sp. MX-AZ01 chloroplast |
4 | NC_004543 | GGA | 5 | 84991 | 85004 | 14 | Anthoceros formosae chloroplast |
5 | NC_004823 | GGA | 5 | 8283 | 8297 | 15 | Eimeria tenella strain Penn State apicoplast |
6 | NC_011087 | GGA | 4 | 814338 | 814349 | 12 | Paulinella chromatophora chromatophore |
7 | NC_014570 | GGA | 4 | 37517 | 37528 | 12 | Eucalyptus grandis chloroplast |
8 | NC_014575 | GGA | 4 | 24674 | 24684 | 11 | Cedrus deodara chloroplast |
9 | NC_014589 | GGA | 4 | 41041 | 41052 | 12 | Cathaya argyrophylla chloroplast |
10 | NC_014592 | GGA | 4 | 149425 | 149436 | 12 | Cheilanthes lindheimeri chloroplast |
11 | NC_014675 | GGA | 4 | 29855 | 29866 | 12 | Isoetes flaccida chloroplast |
12 | NC_014675 | GGA | 4 | 122684 | 122695 | 12 | Isoetes flaccida chloroplast |
13 | NC_014807 | GGA | 4 | 37629 | 37640 | 12 | Corynocarpus laevigata chloroplast |
14 | NC_015139 | GGA | 4 | 74700 | 74711 | 12 | Brassica rapa subsp. pekinensis chloroplast |
15 | NC_015308 | GGA | 4 | 37807 | 37818 | 12 | Hevea brasiliensis chloroplast |
16 | NC_015402 | GGA | 4 | 85689 | 85700 | 12 | Ptilidium pulcherrimum chloroplast |
17 | NC_015605 | GGA | 4 | 38662 | 38673 | 12 | Nelumbo lutea chloroplast |
18 | NC_015605 | GGA | 4 | 87539 | 87551 | 13 | Nelumbo lutea chloroplast |
19 | NC_015610 | GGA | 4 | 38630 | 38641 | 12 | Nelumbo nucifera chloroplast |
20 | NC_015610 | GGA | 4 | 87617 | 87629 | 13 | Nelumbo nucifera chloroplast |
21 | NC_015621 | GGA | 4 | 16711 | 16722 | 12 | Ageratina adenophora chloroplast |
22 | NC_015892 | GGA | 4 | 83826 | 83838 | 13 | Magnolia kwangsiensis chloroplast |
23 | NC_016058 | GGA | 4 | 44942 | 44952 | 11 | Larix decidua chloroplast |
24 | NC_016063 | GGA | 4 | 8819 | 8830 | 12 | Cephalotaxus wilsoniana chloroplast DNA |
25 | NC_016064 | GGA | 4 | 25247 | 25258 | 12 | Pseudotsuga sinensis var. wilsoniana chloroplast |
26 | NC_016064 | GGA | 4 | 77030 | 77040 | 11 | Pseudotsuga sinensis var. wilsoniana chloroplast |
27 | NC_016069 | GGA | 4 | 8577 | 8587 | 11 | Picea morrisonicola chloroplast |
28 | NC_016069 | GGA | 4 | 42398 | 42409 | 12 | Picea morrisonicola chloroplast |
29 | NC_016069 | GGA | 4 | 88596 | 88607 | 12 | Picea morrisonicola chloroplast |
30 | NC_016677 | GGA | 4 | 10526 | 10536 | 11 | Leersia tisserantii plastid |
31 | NC_016734 | GGA | 4 | 74439 | 74450 | 12 | Brassica napus chloroplast |
32 | NC_016736 | GGA | 4 | 38574 | 38585 | 12 | Ricinus communis chloroplast |
33 | NC_018114 | GGA | 4 | 35764 | 35775 | 12 | Erycina pusilla chloroplast |
34 | NC_018357 | GGA | 4 | 83926 | 83938 | 13 | Magnolia denudata chloroplast |
35 | NC_018541 | GGA | 4 | 35520 | 35530 | 11 | Elodea canadensis chloroplast |
36 | NC_018569 | GGA | 4 | 84958 | 84968 | 11 | Trebouxiophyceae sp. MX-AZ01 chloroplast |
37 | NC_018569 | GGA | 4 | 87664 | 87674 | 11 | Trebouxiophyceae sp. MX-AZ01 chloroplast |
38 | NC_020316 | GGA | 4 | 84004 | 84016 | 13 | Magnolia officinalis chloroplast |
39 | NC_020317 | GGA | 4 | 83996 | 84008 | 13 | Magnolia officinalis subsp. biloba voucher SC001 chloroplast |
40 | NC_020318 | GGA | 4 | 83569 | 83581 | 13 | Magnolia grandiflora voucher NJ016 chloroplast |
41 | NC_020321 | GGA | 4 | 13426 | 13436 | 11 | Taxus mairei voucher NN014 chloroplast |
42 | NC_020363 | GGA | 4 | 81779 | 81790 | 12 | Zingiber spectabile plastid |
43 | NC_021101 | GGA | 4 | 35032 | 35043 | 12 | Francoa sonchifolia plastid |
44 | NC_021110 | GGA | 4 | 8722 | 8733 | 12 | Cephalotaxus oliveri chloroplast |
45 | NC_021425 | GGA | 4 | 84441 | 84453 | 13 | Tetracentron sinense chloroplast |
46 | NC_021426 | GGA | 4 | 85449 | 85461 | 13 | Trochodendron aralioides chloroplast |
47 | NC_021437 | GGA | 4 | 115210 | 115220 | 11 | Cunninghamia lanceolata chloroplast |
48 | NC_021437 | GGA | 4 | 117789 | 117800 | 12 | Cunninghamia lanceolata chloroplast |
49 | NC_021439 | GGA | 4 | 45688 | 45699 | 12 | Pinus massoniana chloroplast |
50 | NC_021440 | GGA | 4 | 46429 | 46440 | 12 | Pinus taeda chloroplast |
51 | NC_021618 | GGA | 4 | 83358 | 83369 | 12 | Grateloupia taiwanensis plastid |
52 | NC_021936 | GGA | 4 | 37940 | 37950 | 11 | Najas flexilis chloroplast |
53 | NC_001631 | GGA | 4 | 45738 | 45749 | 12 | Pinus thunbergii chloroplast |
54 | NC_001840 | GGA | 4 | 96579 | 96590 | 12 | Cyanidium caldarium chloroplast |
55 | NC_002186 | GGA | 4 | 10955 | 10966 | 12 | Mesostigma viride chloroplast |
56 | NC_004677 | GGA | 4 | 45515 | 45526 | 12 | Pinus koraiensis chloroplast |
57 | NC_004677 | GGA | 4 | 74054 | 74064 | 11 | Pinus koraiensis chloroplast |
58 | NC_004993 | GGA | 4 | 81264 | 81276 | 13 | Calycanthus floridus var. glaucus chloroplast |
59 | NC_006050 | GGA | 4 | 82248 | 82258 | 11 | Nymphaea alba chloroplast |
60 | NC_006050 | GGA | 4 | 85975 | 85987 | 13 | Nymphaea alba chloroplast |
61 | NC_006861 | GGA | 4 | 141074 | 141085 | 12 | Huperzia lucidula chloroplast |
62 | NC_007407 | GGA | 4 | 34982 | 34993 | 12 | Acorus calamus plastid |
63 | NC_007578 | GGA | 4 | 17626 | 17637 | 12 | Lactuca sativa chloroplast |
64 | NC_007957 | GGA | 4 | 37767 | 37778 | 12 | Vitis vinifera chloroplast |
65 | NC_007977 | GGA | 4 | 17681 | 17692 | 12 | Helianthus annuus chloroplast |
66 | NC_008097 | GGA | 4 | 90506 | 90517 | 12 | Chara vulgaris chloroplast |
67 | NC_008115 | GGA | 4 | 37648 | 37659 | 12 | Eucalyptus globulus subsp. globulus chloroplast |
68 | NC_008235 | GGA | 4 | 34107 | 34118 | 12 | Populus alba chloroplast |
69 | NC_008326 | GGA | 4 | 83973 | 83985 | 13 | Liriodendron tulipifera chloroplast |
70 | NC_008336 | GGA | 4 | 81345 | 81356 | 12 | Nandina domestica chloroplast |
71 | NC_008454 | GGA | 4 | 214003 | 214014 | 12 | Pelargonium x hortorum chloroplast |
72 | NC_008788 | GGA | 4 | 86321 | 86333 | 13 | Nuphar advena chloroplast |
73 | NC_008796 | GGA | 4 | 93001 | 93012 | 12 | Ranunculus macranthus chloroplast |
74 | NC_009143 | GGA | 4 | 34438 | 34449 | 12 | Populus trichocarpa chloroplast |
75 | NC_009268 | GGA | 4 | 33619 | 33630 | 12 | Arabis hirsuta chloroplast |
76 | NC_009272 | GGA | 4 | 33373 | 33384 | 12 | Draba nemorosa chloroplast |
77 | NC_009598 | GGA | 4 | 82828 | 82840 | 13 | Chloranthus spicatus chloroplast |
78 | NC_009618 | GGA | 4 | 69073 | 69084 | 12 | Cycas taitungensis chloroplast |
79 | NC_009962 | GGA | 4 | 82366 | 82378 | 13 | Ceratophyllum demersum chloroplast |
80 | NC_010093 | GGA | 4 | 34662 | 34673 | 12 | Acorus americanus chloroplast |
81 | NC_010359 | GGA | 4 | 81985 | 81996 | 12 | Aneura mirabilis chloroplast |
82 | NC_010433 | GGA | 4 | 36980 | 36991 | 12 | Manihot esculenta chloroplast |
83 | NC_010548 | GGA | 4 | 86442 | 86453 | 12 | Cryptomeria japonica chloroplast |
84 | NC_010548 | GGA | 4 | 97600 | 97610 | 11 | Cryptomeria japonica chloroplast |
85 | NC_010601 | GGA | 4 | 17487 | 17498 | 12 | Guizotia abyssinica chloroplast |
86 | NC_010776 | GGA | 4 | 80953 | 80965 | 13 | Fagopyrum esculentum subsp. ancestrale chloroplast |
87 | NC_011152 | GGA | 4 | 46294 | 46305 | 12 | Picea sitchensis chloroplast |
88 | NC_011153 | GGA | 4 | 45905 | 45916 | 12 | Pinus contorta chloroplast |
89 | NC_011154 | GGA | 4 | 45361 | 45372 | 12 | Pinus gerardiana chloroplast |
90 | NC_011154 | GGA | 4 | 74894 | 74904 | 11 | Pinus gerardiana chloroplast |
91 | NC_011155 | GGA | 4 | 45252 | 45263 | 12 | Pinus krempfii chloroplast |
92 | NC_011155 | GGA | 4 | 74709 | 74719 | 11 | Pinus krempfii chloroplast |
93 | NC_011156 | GGA | 4 | 45599 | 45610 | 12 | Pinus lambertiana chloroplast |
94 | NC_011156 | GGA | 4 | 74200 | 74210 | 11 | Pinus lambertiana chloroplast |
95 | NC_011158 | GGA | 4 | 44885 | 44896 | 12 | Pinus monophylla chloroplast |
96 | NC_011159 | GGA | 4 | 45375 | 45386 | 12 | Pinus nelsonii chloroplast |
97 | NC_011159 | GGA | 4 | 74829 | 74839 | 11 | Pinus nelsonii chloroplast |
98 | NC_011930 | GGA | 4 | 114036 | 114046 | 11 | Keteleeria davidiana chloroplast |
99 | NC_011954 | GGA | 4 | 7307 | 7318 | 12 | Ephedra equisetina chloroplast |
100 | NC_012224 | GGA | 4 | 38866 | 38877 | 12 | Jatropha curcas chloroplast |
101 | NC_012615 | GGA | 4 | 84181 | 84193 | 13 | Megaleranthis saniculifolia chloroplast |
102 | NC_013553 | GGA | 4 | 17511 | 17522 | 12 | Parthenium argentatum chloroplast |
103 | NC_013823 | GGA | 4 | 37185 | 37196 | 12 | Typha latifolia chloroplast |
104 | NC_014062 | GGA | 4 | 100063 | 100073 | 11 | Anomochloa marantoidea chloroplast |