ChloroMitoSSRDB 2.0 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

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Chloroplast Motifs - Imperfect TAAT Repeats

S.NoSequence IDMotifIterationsStartEndTract LengthSequence Name
1NC_012224TAAT8415774160731 Jatropha curcas chloroplast
2NC_001675TAAT7454694549527 Cyanophora paradoxa cyanelle
3NC_015308TAAT6401084013225Hevea brasiliensis chloroplast
4NC_000932TAAT6777747779825 Arabidopsis thaliana chloroplast
5NC_001568TAAT631934123 Epifagus virginiana chloroplast
6NC_010433TAAT6393353935925 Manihot esculenta chloroplast
7NC_016730TAAT5578945791421Silene latifolia chloroplast
8NC_016736TAAT5712127123120Ricinus communis chloroplast
9NC_021109TAAT5414854150420Pleodorina starrii plastid
10NC_021449TAAT512475612477520Utricularia gibba chloroplast
11NC_022099TAAT5772857730521Medicago truncatula cultivar Jemalong 2HA plastid
12NC_022100TAAT5770867710621Medicago truncatula cultivar Borung plastid
13NC_002202TAAT5580045802421 Spinacia oleracea plastid
14NC_003119TAAT5772857730521 Medicago truncatula chloroplast
15NC_004115TAAT5911129113221 Chaetosphaeridium globosum chloroplast
16NC_009272TAAT5419444196320 Draba nemorosa chloroplast
17NC_013823TAAT513019513021420 Typha latifolia chloroplast
18NC_015113TAAT4361493616416Anthriscus cerefolium chloroplast
19NC_015605TAAT41646166015Nelumbo lutea chloroplast
20NC_015610TAAT41817183115Nelumbo nucifera chloroplast
21NC_015899TAAT412602512604117Wolffia australiana chloroplast
22NC_016068TAAT46440645516Nicotiana undulata chloroplast
23NC_019616TAAT410814710816216Vaccinium macrocarpon plastid
24NC_020362TAAT411661811663417Heliconia collinsiana plastid
25NC_020431TAAT4585265854015Salvia miltiorrhiza chloroplast
26NC_021618TAAT4839098392315Grateloupia taiwanensis plastid
27NC_000926TAAT4223472236317 Guillardia theta chloroplast
28NC_002186TAAT4535985361316 Mesostigma viride chloroplast
29NC_002694TAAT4101061012116 Lotus japonicus chloroplast
30NC_004823TAAT4146321464615 Eimeria tenella strain Penn State apicoplast
31NC_005086TAAT4107651078016 Amborella trichopoda chloroplast
32NC_006137TAAT4824398245416 Gracilaria tenuistipitata var. liui chloroplast
33NC_007932TAAT4854038541715 Porphyra yezoensis chloroplast
34NC_008100TAAT4346163463116 Helicosporidium sp. ex Simulium jonesii plastid
35NC_008325TAAT4355273554216 Daucus carota chloroplast
36NC_008589TAAT4800638007816 Thalassiosira pseudonana chloroplast
37NC_008589TAAT411399011400516 Thalassiosira pseudonana chloroplast
38NC_008829TAAT4577885780316 Angiopteris evecta chloroplast
39NC_009267TAAT4774617747616 Olimarabidopsis pumila chloroplast
40NC_009681TAAT48254826916 Leptosira terrestris chloroplast
41NC_009681TAAT4733197333416 Leptosira terrestris chloroplast
42NC_009949TAAT42144215916 Cuscuta obtusiflora chloroplast
43NC_011031TAAT4345063452015 Oedogonium cardiacum chloroplast
44NC_012052TAAT4735087352215 Syntrichia ruralis chloroplast
45NC_011087TAAT3685316854212Paulinella chromatophora chromatophore
46NC_011087TAAT3747797478911Paulinella chromatophora chromatophore
47NC_011087TAAT319136419137512Paulinella chromatophora chromatophore
48NC_011087TAAT330307130308212Paulinella chromatophora chromatophore
49NC_011087TAAT336488136489212Paulinella chromatophora chromatophore
50NC_011087TAAT390018290019211Paulinella chromatophora chromatophore
51NC_014287TAAT3129971300711Durinskia baltica chloroplast
52NC_014569TAAT3398703988213Erodium texanum plastid
53NC_014570TAAT312295512296612Eucalyptus grandis chloroplast
54NC_014570TAAT313086913088012Eucalyptus grandis chloroplast
55NC_014582TAAT3865298653911Monsonia speciosa plastid
56NC_014674TAAT3720807209112Castanea mollissima chloroplast
57NC_014676TAAT313109413110512Theobroma cacao chloroplast
58NC_014699TAAT312225812226912Equisetum arvense chloroplast
59NC_014807TAAT39610962213Corynocarpus laevigata chloroplast
60NC_014807TAAT313054713055812Corynocarpus laevigata chloroplast
61NC_014808TAAT36733674513Thalassiosira oceanica CCMP1005 chloroplast
62NC_014808TAAT3902169022712Thalassiosira oceanica CCMP1005 chloroplast
63NC_014808TAAT310662610663712Thalassiosira oceanica CCMP1005 chloroplast
64NC_014808TAAT312540612541712Thalassiosira oceanica CCMP1005 chloroplast
65NC_014874TAAT35260527112Rhizanthella gardneri plastid
66NC_015204TAAT3384003841112Gossypium thurberi chloroplast
67NC_015204TAAT313072113073212Gossypium thurberi chloroplast
68NC_015206TAAT3852808529112Fragaria vesca subsp. vesca chloroplast
69NC_015402TAAT3523205233011Ptilidium pulcherrimum chloroplast
70NC_015403TAAT3505675057711Fistulifera sp. JPCC DA0580 chloroplast
71NC_015403TAAT311792611793712Fistulifera sp. JPCC DA0580 chloroplast
72NC_015403TAAT311794711795812Fistulifera sp. JPCC DA0580 chloroplast
73NC_015610TAAT31903191311Nelumbo nucifera chloroplast
74NC_015621TAAT3486974870812Ageratina adenophora chloroplast
75NC_015891TAAT3353633537513Spirodela polyrhiza chloroplast
76NC_015891TAAT3518265183611Spirodela polyrhiza chloroplast
77NC_015891TAAT313946213947312Spirodela polyrhiza chloroplast
78NC_015892TAAT313056713057812Magnolia kwangsiensis chloroplast
79NC_015894TAAT3301923020413Wolffiella lingulata chloroplast
80NC_015894TAAT314013414014512Wolffiella lingulata chloroplast
81NC_015899TAAT313931313932412Wolffia australiana chloroplast
82NC_015983TAAT3388213883212Cucumis melo subsp. melo chloroplast
83NC_016063TAAT3496684967811Cephalotaxus wilsoniana chloroplast DNA
84NC_016065TAAT31437144812Taiwania cryptomerioides chloroplast DNA
85NC_016433TAAT37312732413Sesamum indicum chloroplast
86NC_016670TAAT3385093852012Gossypium darwinii chloroplast
87NC_016690TAAT3384913850212Gossypium tomentosum chloroplast
88NC_016692TAAT3383893840012Gossypium herbaceum subsp. africanum chloroplast
89NC_016703TAAT3946969470712Phaeocystis antarctica strain CCMP1374 plastid
90NC_016708TAAT3565085651912Millettia pinnata chloroplast
91NC_016711TAAT3384423845312Gossypium mustelinum chloroplast
92NC_016712TAAT3383623837312Gossypium arboreum chloroplast
93NC_016729TAAT3318093182012Silene conica chloroplast
94NC_016730TAAT3334183342912Silene latifolia chloroplast
95NC_016732TAAT323108123109313Dunaliella salina chloroplast
96NC_016733TAAT3627926280312Pedinomonas minor chloroplast
97NC_016735TAAT3617626177312Fucus vesiculosus chloroplast
98NC_016735TAAT3786107862112Fucus vesiculosus chloroplast
99NC_016735TAAT311851611852712Fucus vesiculosus chloroplast
100NC_016736TAAT313291913293012Ricinus communis chloroplast
101NC_016753TAAT34461447313Colocasia esculenta chloroplast
102NC_016753TAAT3336953370713Colocasia esculenta chloroplast
103NC_016753TAAT3637416375111Colocasia esculenta chloroplast
104NC_016753TAAT3637616377111Colocasia esculenta chloroplast
105NC_016753TAAT313299213300312Colocasia esculenta chloroplast
106NC_017006TAAT3652096522012Mankyua chejuensis chloroplast
107NC_017754TAAT3190061901712Eutreptiella gymnastica plastid
108NC_017754TAAT3303143032512Eutreptiella gymnastica plastid
109NC_017928TAAT34064407613Plasmodium falciparum HB3 apicoplast
110NC_018357TAAT313079613080712Magnolia denudata chloroplast
111NC_018565TAAT3134701348112Pachycladon enysii chloroplast
112NC_018766TAAT3853318534212Fragaria vesca subsp. bracteata chloroplast
113NC_018767TAAT3853358534612Fragaria mandshurica plastid
114NC_019601TAAT3852418525212Fragaria chiloensis chloroplast
115NC_019602TAAT3852608527112Fragaria virginiana chloroplast
116NC_019616TAAT312299512300612Vaccinium macrocarpon plastid
117NC_019628TAAT3938609387112Pellia endiviifolia chloroplast
118NC_019650TAAT311159311160513Festuca pratensis plastid
119NC_019651TAAT311148511149713Lolium multiflorum plastid
120NC_020014TAAT3121391215012Nannochloropsis gaditana chloroplast
121NC_020092TAAT3105361055116Chrysanthemum x morifolium chloroplast
122NC_020146TAAT3243772438711Equisetum hyemale chloroplast
123NC_020147TAAT312527812529013Ophioglossum californicum chloroplast
124NC_020152TAAT3408394085012Quercus rubra plastid
125NC_020316TAAT313093913095012Magnolia officinalis chloroplast
126NC_020317TAAT313088813089912Magnolia officinalis subsp. biloba voucher SC001 chloroplast
127NC_020318TAAT313044113045212Magnolia grandiflora voucher NJ016 chloroplast
128NC_020320TAAT3105381055316Chrysanthemum indicum voucher HeN001 chloroplast
129NC_020321TAAT3974629747312Taxus mairei voucher NN014 chloroplast
130NC_020362TAAT39859986911Heliconia collinsiana plastid
131NC_020366TAAT3299983000811Bismarckia nobilis plastid
132NC_020371TAAT3120641207411Pavlova lutheri chloroplast
133NC_020438TAAT321871421872512Gonium pectorale chloroplast
134NC_020607TAAT3105281054316Artemisia frigida chloroplast
135NC_020795TAAT3213642137613Chondrus crispus plastid complete genome
136NC_020795TAAT3557795579012Chondrus crispus plastid complete genome
137NC_020795TAAT3897508976112Chondrus crispus plastid complete genome
138NC_020795TAAT3957349574512Chondrus crispus plastid complete genome
139NC_020795TAAT312782012783213Chondrus crispus plastid complete genome
140NC_021075TAAT3680536806412Calliarthron tuberculosum chloroplast
141NC_021075TAAT310255710256812Calliarthron tuberculosum chloroplast
142NC_021102TAAT3134431345412Pachycladon cheesemanii chloroplast
143NC_021110TAAT3335213353313Cephalotaxus oliveri chloroplast
144NC_021110TAAT3961679617812Cephalotaxus oliveri chloroplast
145NC_021121TAAT3731817319111Ardisia polysticta chloroplast
146NC_021425TAAT313133113134212Tetracentron sinense chloroplast
147NC_021426TAAT313265313266412Trochodendron aralioides chloroplast
148NC_021429TAAT3297852980016Cymbidium aloifolium voucher KUN:YJB100604 chloroplast
149NC_021430TAAT3554835549311Cymbidium sinense voucher KUN:YJB100605 chloroplast
150NC_021431TAAT3555865559611Cymbidium tortisepalum voucher KUN:HJL091027 chloroplast
151NC_021433TAAT3296672968216Cymbidium mannii voucher KUN:YJB100602 chloroplast
152NC_021441TAAT31437144812Taiwania flousiana chloroplast
153NC_021455TAAT3324673247812Prinsepia utilis plastid
154NC_021455TAAT3490684907912Prinsepia utilis plastid
155NC_021618TAAT38803881412Grateloupia taiwanensis plastid
156NC_021637TAAT3967539676412Phaeocystis globosa strain Pg-G(A) chloroplast
157NC_021645TAAT3247352474511Glycine cyrtoloba voucher CSIRO:G1267 chloroplast
158NC_021646TAAT3247802479011Glycine stenophita voucher CSIRO:G1974 chloroplast
159NC_021649TAAT3248552486511Glycine falcata voucher CSIRO:G1718 chloroplast
160NC_021936TAAT311360311361412Najas flexilis chloroplast
161NC_022099TAAT3757457575915Medicago truncatula cultivar Jemalong 2HA plastid
162NC_000925TAAT3162171622913 Porphyra purpurea chloroplast
163NC_000925TAAT3478334784412 Porphyra purpurea chloroplast
164NC_000925TAAT318046318047311 Porphyra purpurea chloroplast
165NC_000926TAAT3662826629211 Guillardia theta chloroplast
166NC_000932TAAT3135781358912 Arabidopsis thaliana chloroplast
167NC_000932TAAT3767527676211 Arabidopsis thaliana chloroplast
168NC_001319TAAT3528265283611 Marchantia polymorpha chloroplast
169NC_001568TAAT3144741448411 Epifagus virginiana chloroplast
170NC_001603TAAT3386033861311 Euglena gracilis chloroplast
171NC_001603TAAT3639066391712 Euglena gracilis chloroplast
172NC_001675TAAT3100981011013 Cyanophora paradoxa cyanelle
173NC_001675TAAT3306883069912 Cyanophora paradoxa cyanelle
174NC_001675TAAT3667396675113 Cyanophora paradoxa cyanelle
175NC_001675TAAT310471510472612 Cyanophora paradoxa cyanelle
176NC_001713TAAT311026911027911 Odontella sinensis chloroplast
177NC_001713TAAT311892911894012 Odontella sinensis chloroplast
178NC_001840TAAT3295122952211 Cyanidium caldarium chloroplast
179NC_001840TAAT3532815329212 Cyanidium caldarium chloroplast
180NC_001865TAAT313093813094912 Chlorella vulgaris chloroplast
181NC_002186TAAT3301753018713 Mesostigma viride chloroplast
182NC_003119TAAT3757457575915 Medicago truncatula chloroplast
183NC_003386TAAT3766927670312 Psilotum nudum chloroplast
184NC_004115TAAT3667646677512 Chaetosphaeridium globosum chloroplast
185NC_004115TAAT3752417525212 Chaetosphaeridium globosum chloroplast
186NC_004561TAAT3146111462111 Atropa belladonna chloroplast
187NC_004993TAAT3502435025412 Calycanthus floridus var. glaucus chloroplast
188NC_005086TAAT3105731058311 Amborella trichopoda chloroplast
189NC_005086TAAT3553955540612 Amborella trichopoda chloroplast
190NC_005087TAAT33891390212 Physcomitrella patens subsp. patens chloroplast
191NC_005087TAAT36404641512 Physcomitrella patens subsp. patens chloroplast
192NC_005087TAAT3589815899111 Physcomitrella patens subsp. patens chloroplast
193NC_005087TAAT3736497366012 Physcomitrella patens subsp. patens chloroplast
194NC_006050TAAT3876388764912 Nymphaea alba chloroplast
195NC_006137TAAT311636211637312 Gracilaria tenuistipitata var. liui chloroplast
196NC_006137TAAT314529214530211 Gracilaria tenuistipitata var. liui chloroplast
197NC_006137TAAT316875516876612 Gracilaria tenuistipitata var. liui chloroplast
198NC_007144TAAT3387873879812 Cucumis sativus chloroplast
199NC_007144TAAT3388033881412 Cucumis sativus chloroplast
200NC_007144TAAT312712412713512 Cucumis sativus chloroplast
201NC_007602TAAT3618636187311 Nicotiana tomentosiformis chloroplast
202NC_007932TAAT3479474795812 Porphyra yezoensis chloroplast
203NC_007932TAAT3989869899712 Porphyra yezoensis chloroplast
204NC_007932TAAT317387217388211 Porphyra yezoensis chloroplast
205NC_007942TAAT3246332464311 Glycine max chloroplast
206NC_007944TAAT3384313844212 Gossypium hirsutum chloroplast
207NC_008097TAAT35687569812 Chara vulgaris chloroplast
208NC_008097TAAT311021911022911 Chara vulgaris chloroplast
209NC_008097TAAT312011112012212 Chara vulgaris chloroplast
210NC_008097TAAT316089216090312 Chara vulgaris chloroplast
211NC_008114TAAT3606036061412 Pseudendoclonium akinetum chloroplast
212NC_008114TAAT3857678577812 Pseudendoclonium akinetum chloroplast
213NC_008114TAAT311852311853412 Pseudendoclonium akinetum chloroplast
214NC_008115TAAT312310812311912 Eucalyptus globulus subsp. globulus chloroplast
215NC_008115TAAT313100813101912 Eucalyptus globulus subsp. globulus chloroplast
216NC_008116TAAT3277422775312 Staurastrum punctulatum chloroplast
217NC_008116TAAT310435110436212 Staurastrum punctulatum chloroplast
218NC_008116TAAT312862212863312 Staurastrum punctulatum chloroplast
219NC_008117TAAT36874688512 Zygnema circumcarinatum chloroplast
220NC_008117TAAT3514555146612 Zygnema circumcarinatum chloroplast
221NC_008289TAAT32439244911 Ostreococcus tauri chloroplast
222NC_008335TAAT3884298844012 Platanus occidentalis chloroplast
223NC_008335TAAT313303113304212 Platanus occidentalis chloroplast
224NC_008336TAAT312755512756612 Nandina domestica chloroplast
225NC_008407TAAT32346235712 Jasminum nudiflorum chloroplast
226NC_008589TAAT310084210085312 Thalassiosira pseudonana chloroplast
227NC_008589TAAT310564210565211 Thalassiosira pseudonana chloroplast
228NC_008641TAAT3384743848512 Gossypium barbadense chloroplast
229NC_008641TAAT313082313083412 Gossypium barbadense chloroplast
230NC_008788TAAT311864311865412 Nuphar advena chloroplast
231NC_009267TAAT3134541346512 Olimarabidopsis pumila chloroplast
232NC_009270TAAT3134081341912 Capsella bursa-pastoris chloroplast
233NC_009273TAAT3133811339212 Lepidium virginicum chloroplast
234NC_009599TAAT312973712974812 Buxus microphylla chloroplast
235NC_009600TAAT312981012982112 Illicium oligandrum chloroplast
236NC_009681TAAT3410574106913 Leptosira terrestris chloroplast
237NC_009681TAAT3557635577412 Leptosira terrestris chloroplast
238NC_009681TAAT311493311494412 Leptosira terrestris chloroplast
239NC_009950TAAT311156811158013 Lolium perenne chloroplast
240NC_009962TAAT311431911432911 Ceratophyllum demersum chloroplast
241NC_009963TAAT35157516812 Cuscuta exaltata chloroplast
242NC_010109TAAT313730513731612 Lemna minor chloroplast
243NC_010442TAAT314351714352913 Trachelium caeruleum chloroplast
244NC_010772TAAT3614486145912 Heterosigma akashiwo chloroplast
245NC_010772TAAT314676114677212 Heterosigma akashiwo chloroplast
246NC_011031TAAT3713247133512 Oedogonium cardiacum chloroplast
247NC_011031TAAT314315814316912 Oedogonium cardiacum chloroplast
248NC_011600TAAT3798847989512 Vaucheria litorea chloroplast
249NC_011600TAAT3950909510112 Vaucheria litorea chloroplast
250NC_011713TAAT311219011220213 Festuca arundinacea chloroplast
251NC_012052TAAT31137114812 Syntrichia ruralis chloroplast
252NC_012099TAAT3641286413912 Pyramimonas parkeae chloroplast
253NC_012224TAAT313485213486312 Jatropha curcas chloroplast
254NC_012615TAAT3863838639311 Megaleranthis saniculifolia chloroplast
255NC_012615TAAT313046913048012 Megaleranthis saniculifolia chloroplast
256NC_012903TAAT3269212693212 Aureoumbra lagunensis chloroplast
257NC_012978TAAT39180919112 Parachlorella kessleri chloroplast
258NC_012978TAAT3663996641012 Parachlorella kessleri chloroplast
259NC_013703TAAT3456354564612 Cryptomonas paramecium plastid
260NC_013823TAAT313178113179212 Typha latifolia chloroplast
261NC_013991TAAT3690476905711 Phoenix dactylifera chloroplast