Chloroplast Motifs - Imperfect CCTT Repeats
| S.No | Sequence ID | Motif | Iterations | Start | End | Tract Length | Sequence Name |
| 1 | NC_016986 | CCTT | 4 | 146151 | 146165 | 15 | Ginkgo biloba chloroplast |
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| 2 | NC_011930 | CCTT | 4 | 107429 | 107444 | 16 | Keteleeria davidiana chloroplast |
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| 3 | NC_011087 | CCTT | 3 | 464270 | 464280 | 11 | Paulinella chromatophora chromatophore |
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| 4 | NC_011087 | CCTT | 3 | 574581 | 574591 | 11 | Paulinella chromatophora chromatophore |
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| 5 | NC_014345 | CCTT | 3 | 81124 | 81134 | 11 | Alveolata sp. CCMP3155 chloroplast |
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| 6 | NC_014346 | CCTT | 3 | 117649 | 117659 | 11 | Floydiella terrestris chloroplast |
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| 7 | NC_014346 | CCTT | 3 | 270575 | 270587 | 13 | Floydiella terrestris chloroplast |
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| 8 | NC_014570 | CCTT | 3 | 74227 | 74237 | 11 | Eucalyptus grandis chloroplast |
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| 9 | NC_014570 | CCTT | 3 | 140829 | 140839 | 11 | Eucalyptus grandis chloroplast |
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| 10 | NC_014573 | CCTT | 3 | 884 | 894 | 11 | Geranium palmatum plastid |
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| 11 | NC_014575 | CCTT | 3 | 75986 | 75996 | 11 | Cedrus deodara chloroplast |
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| 12 | NC_014592 | CCTT | 3 | 75411 | 75421 | 11 | Cheilanthes lindheimeri chloroplast |
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| 13 | NC_014592 | CCTT | 3 | 155715 | 155725 | 11 | Cheilanthes lindheimeri chloroplast |
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| 14 | NC_014674 | CCTT | 3 | 7410 | 7422 | 13 | Castanea mollissima chloroplast |
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| 15 | NC_014676 | CCTT | 3 | 141113 | 141123 | 11 | Theobroma cacao chloroplast |
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| 16 | NC_014807 | CCTT | 3 | 140448 | 140458 | 11 | Corynocarpus laevigata chloroplast |
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| 17 | NC_015113 | CCTT | 3 | 136198 | 136208 | 11 | Anthriscus cerefolium chloroplast |
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| 18 | NC_015204 | CCTT | 3 | 140745 | 140755 | 11 | Gossypium thurberi chloroplast |
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| 19 | NC_015308 | CCTT | 3 | 141629 | 141639 | 11 | Hevea brasiliensis chloroplast |
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| 20 | NC_015401 | CCTT | 3 | 137199 | 137209 | 11 | Olea europaea subsp. europaea plastid |
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| 21 | NC_015543 | CCTT | 3 | 132327 | 132337 | 11 | Jacobaea vulgaris chloroplast |
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| 22 | NC_015604 | CCTT | 3 | 137186 | 137196 | 11 | Olea europaea subsp. cuspidata chloroplast |
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| 23 | NC_015605 | CCTT | 3 | 143997 | 144007 | 11 | Nelumbo lutea chloroplast |
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| 24 | NC_015608 | CCTT | 3 | 137281 | 137291 | 11 | Olea woodiana subsp. woodiana chloroplast |
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| 25 | NC_015610 | CCTT | 3 | 144086 | 144096 | 11 | Nelumbo nucifera chloroplast |
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| 26 | NC_015623 | CCTT | 3 | 137220 | 137230 | 11 | Olea europaea subsp. maroccana chloroplast |
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| 27 | NC_015803 | CCTT | 3 | 14724 | 14735 | 12 | Indocalamus longiauritus plastid |
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| 28 | NC_015817 | CCTT | 3 | 14726 | 14737 | 12 | Phyllostachys edulis chloroplast |
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| 29 | NC_015820 | CCTT | 3 | 14740 | 14751 | 12 | Acidosasa purpurea chloroplast |
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| 30 | NC_015826 | CCTT | 3 | 14719 | 14730 | 12 | Phyllostachys nigra var. henonis chloroplast |
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| 31 | NC_015830 | CCTT | 3 | 14306 | 14317 | 12 | Bambusa emeiensis chloroplast |
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| 32 | NC_015831 | CCTT | 3 | 14741 | 14752 | 12 | Ferrocalamus rimosivaginus plastid |
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| 33 | NC_015983 | CCTT | 3 | 137428 | 137438 | 11 | Cucumis melo subsp. melo chloroplast |
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| 34 | NC_016058 | CCTT | 3 | 97966 | 97976 | 11 | Larix decidua chloroplast |
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| 35 | NC_016064 | CCTT | 3 | 6265 | 6275 | 11 | Pseudotsuga sinensis var. wilsoniana chloroplast |
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| 36 | NC_016065 | CCTT | 3 | 66280 | 66290 | 11 | Taiwania cryptomerioides chloroplast DNA |
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| 37 | NC_016068 | CCTT | 3 | 137398 | 137408 | 11 | Nicotiana undulata chloroplast |
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| 38 | NC_016430 | CCTT | 3 | 138278 | 138288 | 11 | Eleutherococcus senticosus chloroplast |
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| 39 | NC_016433 | CCTT | 3 | 59809 | 59820 | 12 | Sesamum indicum chloroplast |
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| 40 | NC_016433 | CCTT | 3 | 135147 | 135157 | 11 | Sesamum indicum chloroplast |
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| 41 | NC_016468 | CCTT | 3 | 134816 | 134826 | 11 | Boea hygrometrica chloroplast |
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| 42 | NC_016668 | CCTT | 3 | 140601 | 140611 | 11 | Gossypium raimondii chloroplast |
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| 43 | NC_016670 | CCTT | 3 | 140868 | 140878 | 11 | Gossypium darwinii chloroplast |
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| 44 | NC_016690 | CCTT | 3 | 140911 | 140921 | 11 | Gossypium tomentosum chloroplast |
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| 45 | NC_016692 | CCTT | 3 | 140793 | 140803 | 11 | Gossypium herbaceum subsp. africanum chloroplast |
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| 46 | NC_016699 | CCTT | 3 | 14721 | 14732 | 12 | Phyllostachys propinqua chloroplast |
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| 47 | NC_016703 | CCTT | 3 | 62305 | 62315 | 11 | Phaeocystis antarctica strain CCMP1374 plastid |
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| 48 | NC_016708 | CCTT | 3 | 133948 | 133958 | 11 | Millettia pinnata chloroplast |
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| 49 | NC_016711 | CCTT | 3 | 140792 | 140802 | 11 | Gossypium mustelinum chloroplast |
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| 50 | NC_016712 | CCTT | 3 | 140711 | 140721 | 11 | Gossypium arboreum chloroplast |
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| 51 | NC_016727 | CCTT | 3 | 133556 | 133566 | 11 | Silene vulgaris chloroplast |
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| 52 | NC_016728 | CCTT | 3 | 135460 | 135470 | 11 | Silene noctiflora chloroplast |
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| 53 | NC_016729 | CCTT | 3 | 131574 | 131584 | 11 | Silene conica chloroplast |
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| 54 | NC_016730 | CCTT | 3 | 133719 | 133729 | 11 | Silene latifolia chloroplast |
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| 55 | NC_016736 | CCTT | 3 | 142952 | 142962 | 11 | Ricinus communis chloroplast |
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| 56 | NC_017006 | CCTT | 3 | 10856 | 10868 | 13 | Mankyua chejuensis chloroplast |
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| 57 | NC_017894 | CCTT | 3 | 140469 | 140479 | 11 | Gossypium gossypioides chloroplast |
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| 58 | NC_018109 | CCTT | 3 | 139729 | 139739 | 11 | Gossypium incanum chloroplast |
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| 59 | NC_018110 | CCTT | 3 | 140052 | 140062 | 11 | Gossypium somalense chloroplast |
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| 60 | NC_018111 | CCTT | 3 | 139951 | 139961 | 11 | Gossypium capitis-viridis chloroplast |
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| 61 | NC_018112 | CCTT | 3 | 140085 | 140095 | 11 | Gossypium areysianum chloroplast |
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| 62 | NC_018113 | CCTT | 3 | 140365 | 140375 | 11 | Gossypium robinsonii chloroplast |
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| 63 | NC_018117 | CCTT | 3 | 137350 | 137360 | 11 | Datura stramonium chloroplast |
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| 64 | NC_018357 | CCTT | 3 | 140716 | 140726 | 11 | Magnolia denudata chloroplast |
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| 65 | NC_018552 | CCTT | 3 | 138088 | 138098 | 11 | Capsicum annuum chloroplast |
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| 66 | NC_019616 | CCTT | 3 | 168319 | 168329 | 11 | Vaccinium macrocarpon plastid |
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| 67 | NC_020019 | CCTT | 3 | 9492 | 9503 | 12 | Camellia sinensis chloroplast |
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| 68 | NC_020092 | CCTT | 3 | 108602 | 108612 | 11 | Chrysanthemum x morifolium chloroplast |
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| 69 | NC_020092 | CCTT | 3 | 132479 | 132489 | 11 | Chrysanthemum x morifolium chloroplast |
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| 70 | NC_020098 | CCTT | 3 | 60051 | 60062 | 12 | Tectona grandis chloroplast |
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| 71 | NC_020098 | CCTT | 3 | 135529 | 135539 | 11 | Tectona grandis chloroplast |
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| 72 | NC_020316 | CCTT | 3 | 140846 | 140856 | 11 | Magnolia officinalis chloroplast |
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| 73 | NC_020317 | CCTT | 3 | 140759 | 140769 | 11 | Magnolia officinalis subsp. biloba voucher SC001 chloroplast |
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| 74 | NC_020318 | CCTT | 3 | 140293 | 140303 | 11 | Magnolia grandiflora voucher NJ016 chloroplast |
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| 75 | NC_020320 | CCTT | 3 | 108561 | 108571 | 11 | Chrysanthemum indicum voucher HeN001 chloroplast |
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| 76 | NC_020320 | CCTT | 3 | 132405 | 132415 | 11 | Chrysanthemum indicum voucher HeN001 chloroplast |
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| 77 | NC_020341 | CCTT | 3 | 14685 | 14696 | 12 | Arundinaria gigantea chloroplast |
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| 78 | NC_020431 | CCTT | 3 | 58156 | 58167 | 12 | Salvia miltiorrhiza chloroplast |
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| 79 | NC_020431 | CCTT | 3 | 132709 | 132719 | 11 | Salvia miltiorrhiza chloroplast |
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| 80 | NC_020607 | CCTT | 3 | 132506 | 132516 | 11 | Artemisia frigida chloroplast |
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| 81 | NC_021075 | CCTT | 3 | 72816 | 72826 | 11 | Calliarthron tuberculosum chloroplast |
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| 82 | NC_021101 | CCTT | 3 | 12399 | 12410 | 12 | Francoa sonchifolia plastid |
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| 83 | NC_021101 | CCTT | 3 | 137868 | 137878 | 11 | Francoa sonchifolia plastid |
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| 84 | NC_021109 | CCTT | 3 | 145475 | 145486 | 12 | Pleodorina starrii plastid |
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| 85 | NC_021111 | CCTT | 3 | 37076 | 37086 | 11 | Cistanche deserticola chloroplast |
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| 86 | NC_021121 | CCTT | 3 | 137429 | 137439 | 11 | Ardisia polysticta chloroplast |
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| 87 | NC_021423 | CCTT | 3 | 136256 | 136266 | 11 | Catharanthus roseus cultivar Pacifica Punch Halo chloroplast |
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| 88 | NC_021425 | CCTT | 3 | 141272 | 141282 | 11 | Tetracentron sinense chloroplast |
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| 89 | NC_021426 | CCTT | 3 | 142608 | 142618 | 11 | Trochodendron aralioides chloroplast |
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| 90 | NC_021437 | CCTT | 3 | 54259 | 54269 | 11 | Cunninghamia lanceolata chloroplast |
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| 91 | NC_021439 | CCTT | 3 | 6198 | 6208 | 11 | Pinus massoniana chloroplast |
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| 92 | NC_021440 | CCTT | 3 | 7032 | 7042 | 11 | Pinus taeda chloroplast |
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| 93 | NC_021441 | CCTT | 3 | 65851 | 65861 | 11 | Taiwania flousiana chloroplast |
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| 94 | NC_021936 | CCTT | 3 | 135888 | 135899 | 12 | Najas flexilis chloroplast |
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| 95 | NC_022099 | CCTT | 3 | 24989 | 24999 | 11 | Medicago truncatula cultivar Jemalong 2HA plastid |
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| 96 | NC_022100 | CCTT | 3 | 24994 | 25004 | 11 | Medicago truncatula cultivar Borung plastid |
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| 97 | NC_001603 | CCTT | 3 | 136583 | 136593 | 11 | Euglena gracilis chloroplast |
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| 98 | NC_001631 | CCTT | 3 | 6146 | 6156 | 11 | Pinus thunbergii chloroplast |
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| 99 | NC_001666 | CCTT | 3 | 14377 | 14388 | 12 | Zea mays chloroplast |
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| 100 | NC_001799 | CCTT | 3 | 1363 | 1373 | 11 | Toxoplasma gondii RH apicoplast |
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| 101 | NC_001799 | CCTT | 3 | 6363 | 6373 | 11 | Toxoplasma gondii RH apicoplast |
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| 102 | NC_001840 | CCTT | 3 | 66062 | 66072 | 11 | Cyanidium caldarium chloroplast |
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| 103 | NC_001879 | CCTT | 3 | 137471 | 137481 | 11 | Nicotiana tabacum plastid |
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| 104 | NC_002694 | CCTT | 3 | 131811 | 131821 | 11 | Lotus japonicus chloroplast |
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| 105 | NC_003119 | CCTT | 3 | 24989 | 24999 | 11 | Medicago truncatula chloroplast |
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| 106 | NC_003386 | CCTT | 3 | 73281 | 73292 | 12 | Psilotum nudum chloroplast |
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| 107 | NC_003386 | CCTT | 3 | 136203 | 136214 | 12 | Psilotum nudum chloroplast |
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| 108 | NC_004561 | CCTT | 3 | 138081 | 138091 | 11 | Atropa belladonna chloroplast |
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| 109 | NC_004993 | CCTT | 3 | 136240 | 136250 | 11 | Calycanthus floridus var. glaucus chloroplast |
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| 110 | NC_005086 | CCTT | 3 | 143369 | 143379 | 11 | Amborella trichopoda chloroplast |
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| 111 | NC_005878 | CCTT | 3 | 76408 | 76419 | 12 | Saccharum hybrid cultivar SP-80-3280 chloroplast |
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| 112 | NC_006050 | CCTT | 3 | 140732 | 140742 | 11 | Nymphaea alba chloroplast |
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| 113 | NC_006084 | CCTT | 3 | 14781 | 14792 | 12 | Saccharum hybrid cultivar NCo 310 chloroplast |
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| 114 | NC_006137 | CCTT | 3 | 64402 | 64414 | 13 | Gracilaria tenuistipitata var. liui chloroplast |
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| 115 | NC_006290 | CCTT | 3 | 137855 | 137865 | 11 | Panax ginseng chloroplast |
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| 116 | NC_007144 | CCTT | 3 | 137176 | 137186 | 11 | Cucumis sativus chloroplast |
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| 117 | NC_007407 | CCTT | 3 | 5368 | 5378 | 11 | Acorus calamus plastid |
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| 118 | NC_007500 | CCTT | 3 | 137469 | 137479 | 11 | Nicotiana sylvestris chloroplast |
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| 119 | NC_007578 | CCTT | 3 | 134043 | 134053 | 11 | Lactuca sativa chloroplast |
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| 120 | NC_007602 | CCTT | 3 | 137200 | 137210 | 11 | Nicotiana tomentosiformis chloroplast |
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| 121 | NC_007898 | CCTT | 3 | 136955 | 136965 | 11 | Solanum lycopersicum chloroplast |
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| 122 | NC_007932 | CCTT | 3 | 98048 | 98058 | 11 | Porphyra yezoensis chloroplast |
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| 123 | NC_007943 | CCTT | 3 | 136864 | 136874 | 11 | Solanum bulbocastanum chloroplast |
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| 124 | NC_007944 | CCTT | 3 | 140796 | 140806 | 11 | Gossypium hirsutum chloroplast |
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| 125 | NC_007957 | CCTT | 3 | 141628 | 141638 | 11 | Vitis vinifera chloroplast |
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| 126 | NC_007977 | CCTT | 3 | 132948 | 132958 | 11 | Helianthus annuus chloroplast |
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| 127 | NC_008096 | CCTT | 3 | 136817 | 136827 | 11 | Solanum tuberosum chloroplast |
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| 128 | NC_008115 | CCTT | 3 | 74319 | 74329 | 11 | Eucalyptus globulus subsp. globulus chloroplast |
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| 129 | NC_008115 | CCTT | 3 | 140972 | 140982 | 11 | Eucalyptus globulus subsp. globulus chloroplast |
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| 130 | NC_008235 | CCTT | 3 | 136595 | 136605 | 11 | Populus alba chloroplast |
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| 131 | NC_008325 | CCTT | 3 | 136470 | 136480 | 11 | Daucus carota chloroplast |
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| 132 | NC_008326 | CCTT | 3 | 140579 | 140589 | 11 | Liriodendron tulipifera chloroplast |
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| 133 | NC_008335 | CCTT | 3 | 10014 | 10024 | 11 | Platanus occidentalis chloroplast |
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| 134 | NC_008335 | CCTT | 3 | 143018 | 143028 | 11 | Platanus occidentalis chloroplast |
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| 135 | NC_008336 | CCTT | 3 | 68617 | 68629 | 13 | Nandina domestica chloroplast |
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| 136 | NC_008336 | CCTT | 3 | 137364 | 137374 | 11 | Nandina domestica chloroplast |
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| 137 | NC_008454 | CCTT | 3 | 84466 | 84476 | 11 | Pelargonium x hortorum chloroplast |
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| 138 | NC_008457 | CCTT | 3 | 141034 | 141044 | 11 | Piper cenocladum chloroplast |
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| 139 | NC_008535 | CCTT | 3 | 136394 | 136404 | 11 | Coffea arabica chloroplast |
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| 140 | NC_008641 | CCTT | 3 | 140828 | 140838 | 11 | Gossypium barbadense chloroplast |
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| 141 | NC_008788 | CCTT | 3 | 141401 | 141411 | 11 | Nuphar advena chloroplast |
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| 142 | NC_009143 | CCTT | 3 | 137133 | 137143 | 11 | Populus trichocarpa chloroplast |
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| 143 | NC_009599 | CCTT | 3 | 139642 | 139652 | 11 | Buxus microphylla chloroplast |
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| 144 | NC_009600 | CCTT | 3 | 139873 | 139883 | 11 | Illicium oligandrum chloroplast |
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| 145 | NC_009766 | CCTT | 3 | 110259 | 110269 | 11 | Cuscuta reflexa chloroplast |
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| 146 | NC_009808 | CCTT | 3 | 145766 | 145776 | 11 | Ipomoea purpurea chloroplast |
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| 147 | NC_009962 | CCTT | 3 | 137425 | 137435 | 11 | Ceratophyllum demersum chloroplast |
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| 148 | NC_009963 | CCTT | 3 | 114167 | 114177 | 11 | Cuscuta exaltata chloroplast |
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| 149 | NC_010093 | CCTT | 3 | 5040 | 5050 | 11 | Acorus americanus chloroplast |
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| 150 | NC_010359 | CCTT | 3 | 17136 | 17147 | 12 | Aneura mirabilis chloroplast |
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| 151 | NC_010433 | CCTT | 3 | 141869 | 141879 | 11 | Manihot esculenta chloroplast |
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| 152 | NC_010442 | CCTT | 3 | 158832 | 158842 | 11 | Trachelium caeruleum chloroplast |
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| 153 | NC_011152 | CCTT | 3 | 6233 | 6243 | 11 | Picea sitchensis chloroplast |
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| 154 | NC_011153 | CCTT | 3 | 6235 | 6245 | 11 | Pinus contorta chloroplast |
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| 155 | NC_011158 | CCTT | 3 | 5996 | 6006 | 11 | Pinus monophylla chloroplast |
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| 156 | NC_011930 | CCTT | 3 | 46907 | 46917 | 11 | Keteleeria davidiana chloroplast |
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| 157 | NC_012224 | CCTT | 3 | 144900 | 144910 | 11 | Jatropha curcas chloroplast |
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| 158 | NC_012615 | CCTT | 3 | 140395 | 140405 | 11 | Megaleranthis saniculifolia chloroplast |
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| 159 | NC_012927 | CCTT | 3 | 14260 | 14271 | 12 | Bambusa oldhamii chloroplast |
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| 160 | NC_013088 | CCTT | 3 | 14291 | 14302 | 12 | Dendrocalamus latiflorus chloroplast |
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| 161 | NC_013553 | CCTT | 3 | 134179 | 134189 | 11 | Parthenium argentatum chloroplast |
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| 162 | NC_014063 | CCTT | 3 | 94205 | 94215 | 11 | Lathyrus sativus chloroplast |
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| 163 | NC_013707 | CCTT | 3 | 137189 | 137199 | 11 | Olea europaea chloroplast |
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