ChloroMitoSSRDB 2.0 - Database of Microsatellites from Chloroplast & Mitochondrial Genomes

Chloroplast Motifs - Imperfect CATA Repeats

S.No	Sequence ID	Motif	Iterations	Start	End	Tract Length	Sequence Name
1	NC_016065	CATA	4	36819	36834	16	Taiwania cryptomerioides chloroplast DNA
2	NC_020321	CATA	4	50842	50856	15	Taxus mairei voucher NN014 chloroplast
3	NC_011031	CATA	4	88711	88726	16	Oedogonium cardiacum chloroplast
4	NC_013086	CATA	4	128858	128873	16	Selaginella moellendorffii plastid
5	NC_011087	CATA	3	709388	709399	12	Paulinella chromatophora chromatophore
6	NC_011087	CATA	3	840709	840720	12	Paulinella chromatophora chromatophore
7	NC_014569	CATA	3	28987	28997	11	Erodium texanum plastid
8	NC_014569	CATA	3	39302	39313	12	Erodium texanum plastid
9	NC_014592	CATA	3	20676	20687	12	Cheilanthes lindheimeri chloroplast
10	NC_014807	CATA	3	51005	51015	11	Corynocarpus laevigata chloroplast
11	NC_014874	CATA	3	929	940	12	Rhizanthella gardneri plastid
12	NC_014874	CATA	3	17066	17076	11	Rhizanthella gardneri plastid
13	NC_015113	CATA	3	141633	141644	12	Anthriscus cerefolium chloroplast
14	NC_015139	CATA	3	139555	139566	12	Brassica rapa subsp. pekinensis chloroplast
15	NC_015204	CATA	3	51098	51108	11	Gossypium thurberi chloroplast
16	NC_015206	CATA	3	1950	1960	11	Fragaria vesca subsp. vesca chloroplast
17	NC_015308	CATA	3	119072	119083	12	Hevea brasiliensis chloroplast
18	NC_015401	CATA	3	50190	50200	11	Olea europaea subsp. europaea plastid
19	NC_015604	CATA	3	50189	50199	11	Olea europaea subsp. cuspidata chloroplast
20	NC_015608	CATA	3	50252	50262	11	Olea woodiana subsp. woodiana chloroplast
21	NC_015623	CATA	3	50201	50211	11	Olea europaea subsp. maroccana chloroplast
22	NC_015899	CATA	3	11189	11200	12	Wolffia australiana chloroplast
23	NC_015990	CATA	3	35272	35282	11	Panicum virgatum chloroplast
24	NC_016063	CATA	3	71893	71904	12	Cephalotaxus wilsoniana chloroplast DNA
25	NC_016430	CATA	3	51011	51021	11	Eleutherococcus senticosus chloroplast
26	NC_016668	CATA	3	50958	50968	11	Gossypium raimondii chloroplast
27	NC_016670	CATA	3	51223	51233	11	Gossypium darwinii chloroplast
28	NC_016692	CATA	3	51098	51108	11	Gossypium herbaceum subsp. africanum chloroplast
29	NC_016711	CATA	3	51151	51161	11	Gossypium mustelinum chloroplast
30	NC_016712	CATA	3	51058	51068	11	Gossypium arboreum chloroplast
31	NC_016734	CATA	3	138934	138945	12	Brassica napus chloroplast
32	NC_016736	CATA	3	51421	51432	12	Ricinus communis chloroplast
33	NC_016753	CATA	3	34554	34565	12	Colocasia esculenta chloroplast
34	NC_017609	CATA	3	15116	15127	12	Phalaenopsis equestris chloroplast
35	NC_017894	CATA	3	51002	51012	11	Gossypium gossypioides chloroplast
36	NC_018109	CATA	3	50475	50485	11	Gossypium incanum chloroplast
37	NC_018110	CATA	3	50624	50634	11	Gossypium somalense chloroplast
38	NC_018111	CATA	3	50547	50557	11	Gossypium capitis-viridis chloroplast
39	NC_018112	CATA	3	50648	50658	11	Gossypium areysianum chloroplast
40	NC_018113	CATA	3	50769	50779	11	Gossypium robinsonii chloroplast
41	NC_018565	CATA	3	140965	140976	12	Pachycladon enysii chloroplast
42	NC_018766	CATA	3	1916	1926	11	Fragaria vesca subsp. bracteata chloroplast
43	NC_018767	CATA	3	1916	1926	11	Fragaria mandshurica plastid
44	NC_019601	CATA	3	1950	1960	11	Fragaria chiloensis chloroplast
45	NC_019602	CATA	3	1950	1960	11	Fragaria virginiana chloroplast
46	NC_020098	CATA	3	49384	49394	11	Tectona grandis chloroplast
47	NC_020361	CATA	3	124818	124829	12	Podocarpus totara chloroplast
48	NC_020364	CATA	3	84186	84197	12	Pseudophoenix vinifera plastid
49	NC_020367	CATA	3	27670	27681	12	Dasypogon bromeliifolius plastid
50	NC_020367	CATA	3	61723	61733	11	Dasypogon bromeliifolius plastid
51	NC_021102	CATA	3	140551	140562	12	Pachycladon cheesemanii chloroplast
52	NC_021110	CATA	3	71414	71425	12	Cephalotaxus oliveri chloroplast
53	NC_021121	CATA	3	13191	13201	11	Ardisia polysticta chloroplast
54	NC_021372	CATA	3	6542	6553	12	Pharus latifolius chloroplast
55	NC_021429	CATA	3	47641	47652	12	Cymbidium aloifolium voucher KUN:YJB100604 chloroplast
56	NC_021618	CATA	3	131911	131923	13	Grateloupia taiwanensis plastid
57	NC_022099	CATA	3	104107	104119	13	Medicago truncatula cultivar Jemalong 2HA plastid
58	NC_022100	CATA	3	103914	103926	13	Medicago truncatula cultivar Borung plastid
59	NC_001666	CATA	3	35951	35961	11	Zea mays chloroplast
60	NC_003119	CATA	3	104107	104119	13	Medicago truncatula chloroplast
61	NC_003386	CATA	3	78695	78706	12	Psilotum nudum chloroplast
62	NC_004799	CATA	3	75830	75842	13	Cyanidioschyzon merolae strain 10D chloroplast
63	NC_005086	CATA	3	148804	148815	12	Amborella trichopoda chloroplast
64	NC_005878	CATA	3	98086	98096	11	Saccharum hybrid cultivar SP-80-3280 chloroplast
65	NC_006084	CATA	3	36459	36469	11	Saccharum hybrid cultivar NCo 310 chloroplast
66	NC_006137	CATA	3	19091	19103	13	Gracilaria tenuistipitata var. liui chloroplast
67	NC_006290	CATA	3	50565	50575	11	Panax ginseng chloroplast
68	NC_006861	CATA	3	73807	73818	12	Huperzia lucidula chloroplast
69	NC_007944	CATA	3	51135	51145	11	Gossypium hirsutum chloroplast
70	NC_007957	CATA	3	52392	52403	12	Vitis vinifera chloroplast
71	NC_008117	CATA	3	30299	30310	12	Zygnema circumcarinatum chloroplast
72	NC_008325	CATA	3	143014	143025	12	Daucus carota chloroplast
73	NC_008408	CATA	3	37229	37241	13	Bigelowiella natans plastid
74	NC_008589	CATA	3	30659	30669	11	Thalassiosira pseudonana chloroplast
75	NC_008602	CATA	3	36702	36712	11	Sorghum bicolor chloroplast
76	NC_008641	CATA	3	51188	51198	11	Gossypium barbadense chloroplast
77	NC_008829	CATA	3	79245	79255	11	Angiopteris evecta chloroplast
78	NC_009265	CATA	3	140211	140222	12	Aethionema cordifolium chloroplast
79	NC_009266	CATA	3	140313	140324	12	Aethionema grandiflorum chloroplast
80	NC_009267	CATA	3	140799	140810	12	Olimarabidopsis pumila chloroplast
81	NC_009268	CATA	3	139736	139747	12	Arabis hirsuta chloroplast
82	NC_009269	CATA	3	140602	140613	12	Barbarea verna chloroplast
83	NC_009271	CATA	3	141228	141239	12	Crucihimalaya wallichii chloroplast
84	NC_009272	CATA	3	139423	139434	12	Draba nemorosa chloroplast
85	NC_009273	CATA	3	140827	140838	12	Lepidium virginicum chloroplast
86	NC_009274	CATA	3	138705	138716	12	Lobularia maritima chloroplast
87	NC_009275	CATA	3	141166	141177	12	Nasturtium officinale chloroplast
88	NC_009573	CATA	3	104218	104230	13	Rhodomonas salina chloroplast
89	NC_009598	CATA	3	85112	85123	12	Chloranthus spicatus chloroplast
90	NC_009681	CATA	3	106692	106702	11	Leptosira terrestris chloroplast
91	NC_010109	CATA	3	28858	28869	12	Lemna minor chloroplast
92	NC_010323	CATA	3	51378	51388	11	Carica papaya chloroplast
93	NC_011031	CATA	3	195659	195670	12	Oedogonium cardiacum chloroplast
94	NC_011600	CATA	3	1467	1479	13	Vaucheria litorea chloroplast
95	NC_011828	CATA	3	54925	54937	13	Trifolium subterraneum chloroplast
96	NC_012099	CATA	3	25518	25528	11	Pyramimonas parkeae chloroplast
97	NC_012818	CATA	3	111049	111061	13	Alsophila spinulosa chloroplast
98	NC_013273	CATA	3	36193	36203	11	Coix lacryma-jobi chloroplast
99	NC_013359	CATA	3	46206	46217	12	Bryopsis hypnoides chloroplast
100	NC_013991	CATA	3	84546	84557	12	Phoenix dactylifera chloroplast
101	NC_013707	CATA	3	50165	50175	11	Olea europaea chloroplast

ChloroMitoSSRDB 2.0 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

Chloroplast Motifs - Imperfect CATA Repeats