ChloroMitoSSRDB 2.0 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

Back To Motif Summary

Chloroplast Motifs - Imperfect AAAC Repeats

S.NoSequence IDMotifIterationsStartEndTract LengthSequence Name
1NC_008454AAAC7976169764328 Pelargonium x hortorum chloroplast
2NC_016433AAAC5692616928121Sesamum indicum chloroplast
3NC_020098AAAC5692446926421Tectona grandis chloroplast
4NC_020431AAAC5668626688221Salvia miltiorrhiza chloroplast
5NC_012978AAAC5162321625120 Parachlorella kessleri chloroplast
6NC_014287AAAC410416710418115Durinskia baltica chloroplast
7NC_018051AAAC415152515153915Vigna unguiculata chloroplast
8NC_021075AAAC416808316809816Calliarthron tuberculosum chloroplast
9NC_007898AAAC4699066992116 Solanum lycopersicum chloroplast
10NC_008116AAAC4881948820815 Staurastrum punctulatum chloroplast
11NC_008407AAAC45073508816 Jasminum nudiflorum chloroplast
12NC_011032AAAC410429010430516 Brachypodium distachyon chloroplast
13NC_014062AAAC4234932350715 Anomochloa marantoidea chloroplast
14NC_011087AAAC321567121568212Paulinella chromatophora chromatophore
15NC_011087AAAC379713379714412Paulinella chromatophora chromatophore
16NC_014267AAAC311704011705112Kryptoperidinium foliaceum chloroplast
17NC_014340AAAC3781857819612Chromera velia strain CCMP2878 chloroplast
18NC_014346AAAC312903912904911Floydiella terrestris chloroplast
19NC_014346AAAC320794920796012Floydiella terrestris chloroplast
20NC_014346AAAC321048221049312Floydiella terrestris chloroplast
21NC_014346AAAC325898725899711Floydiella terrestris chloroplast
22NC_014346AAAC331757931759012Floydiella terrestris chloroplast
23NC_014346AAAC348120148121111Floydiella terrestris chloroplast
24NC_014346AAAC351305051306011Floydiella terrestris chloroplast
25NC_014346AAAC351987051988011Floydiella terrestris chloroplast
26NC_014348AAAC3489064891611Pteridium aquilinum subsp. aquilinum chloroplast
27NC_014348AAAC311452111453212Pteridium aquilinum subsp. aquilinum chloroplast
28NC_014348AAAC314925514926612Pteridium aquilinum subsp. aquilinum chloroplast
29NC_014569AAAC3134941350512Erodium texanum plastid
30NC_014570AAAC3638786388912Eucalyptus grandis chloroplast
31NC_014573AAAC312398512399612Geranium palmatum plastid
32NC_014674AAAC36450646213Castanea mollissima chloroplast
33NC_014808AAAC3864738648412Thalassiosira oceanica CCMP1005 chloroplast
34NC_015083AAAC31673168311Erodium carvifolium chloroplast
35NC_015083AAAC3746737468412Erodium carvifolium chloroplast
36NC_015084AAAC311686811687912Coccomyxa sp. C-169 plastid
37NC_015084AAAC316179416180613Coccomyxa sp. C-169 plastid
38NC_015139AAAC3359063591712Brassica rapa subsp. pekinensis chloroplast
39NC_015359AAAC3138861389712Chlorella variabilis plastid
40NC_015359AAAC3160051601511Chlorella variabilis plastid
41NC_015359AAAC3171161712712Chlorella variabilis plastid
42NC_015359AAAC3641706418011Chlorella variabilis plastid
43NC_015359AAAC3726377264812Chlorella variabilis plastid
44NC_015359AAAC3995269953611Chlorella variabilis plastid
45NC_015403AAAC3762067621712Fistulifera sp. JPCC DA0580 chloroplast
46NC_015605AAAC312141612142611Nelumbo lutea chloroplast
47NC_015610AAAC312150512151511Nelumbo nucifera chloroplast
48NC_015645AAAC32474248512Schizomeris leibleinii chloroplast
49NC_015645AAAC3115251153612Schizomeris leibleinii chloroplast
50NC_015645AAAC3361953620511Schizomeris leibleinii chloroplast
51NC_015645AAAC3620966210712Schizomeris leibleinii chloroplast
52NC_015645AAAC3621536216412Schizomeris leibleinii chloroplast
53NC_015645AAAC3821258213511Schizomeris leibleinii chloroplast
54NC_015645AAAC316023716024711Schizomeris leibleinii chloroplast
55NC_015803AAAC3969049691613Indocalamus longiauritus plastid
56NC_015817AAAC3968449685613Phyllostachys edulis chloroplast
57NC_015820AAAC3969029691413Acidosasa purpurea chloroplast
58NC_015826AAAC3968659687713Phyllostachys nigra var. henonis chloroplast
59NC_015830AAAC3966229663413Bambusa emeiensis chloroplast
60NC_015831AAAC3967539676513Ferrocalamus rimosivaginus plastid
61NC_015891AAAC36254626613Spirodela polyrhiza chloroplast
62NC_015894AAAC312169612170712Wolffiella lingulata chloroplast
63NC_015990AAAC3964039641513Panicum virgatum chloroplast
64NC_015996AAAC3687596877012Pyrus pyrifolia chloroplast
65NC_016063AAAC311568011569011Cephalotaxus wilsoniana chloroplast DNA
66NC_016068AAAC3190251903511Nicotiana undulata chloroplast
67NC_016068AAAC3704717048212Nicotiana undulata chloroplast
68NC_016677AAAC3945999461113Leersia tisserantii plastid
69NC_016708AAAC3309793099012Millettia pinnata chloroplast
70NC_016718AAAC3947539476513Rhynchoryza subulata plastid
71NC_016727AAAC38686869611Silene vulgaris chloroplast
72NC_016727AAAC3499965000813Silene vulgaris chloroplast
73NC_016728AAAC38777878711Silene noctiflora chloroplast
74NC_016729AAAC38700871011Silene conica chloroplast
75NC_016730AAAC38785879511Silene latifolia chloroplast
76NC_016730AAAC3503385035013Silene latifolia chloroplast
77NC_016731AAAC310142610143712Synedra acus chloroplast
78NC_016732AAAC3782527826211Dunaliella salina chloroplast
79NC_016732AAAC3799557996612Dunaliella salina chloroplast
80NC_016732AAAC312173712174711Dunaliella salina chloroplast
81NC_016732AAAC315029315030412Dunaliella salina chloroplast
82NC_016732AAAC316090616091611Dunaliella salina chloroplast
83NC_016732AAAC317204717205711Dunaliella salina chloroplast
84NC_016734AAAC3358533586412Brassica napus chloroplast
85NC_016735AAAC3582215823212Fucus vesiculosus chloroplast
86NC_016927AAAC3932839329513Oryza meridionalis chloroplast
87NC_017835AAAC3932729328413Oryza rufipogon chloroplast
88NC_018117AAAC336137111Datura stramonium chloroplast
89NC_018117AAAC3188601887011Datura stramonium chloroplast
90NC_018117AAAC3701867019712Datura stramonium chloroplast
91NC_018523AAAC3412724128312Saccharina japonica chloroplast
92NC_018541AAAC3722497225911Elodea canadensis chloroplast
93NC_018552AAAC3189551896511Capsicum annuum chloroplast
94NC_018552AAAC3711497116012Capsicum annuum chloroplast
95NC_018565AAAC3366143662512Pachycladon enysii chloroplast
96NC_018565AAAC311135011136011Pachycladon enysii chloroplast
97NC_019616AAAC316311516312511Vaccinium macrocarpon plastid
98NC_019616AAAC317288817289912Vaccinium macrocarpon plastid
99NC_019648AAAC3932779328913Festuca altissima plastid
100NC_019649AAAC3425954260612Festuca ovina plastid
101NC_019649AAAC3915919160313Festuca ovina plastid
102NC_019651AAAC3435744358512Lolium multiflorum plastid
103NC_020018AAAC3532195323012Monomorphina aenigmatica strain UTEX1284 chloroplast
104NC_020018AAAC3586295863911Monomorphina aenigmatica strain UTEX1284 chloroplast
105NC_020019AAAC3705177052913Camellia sinensis chloroplast
106NC_020146AAAC3629826299211Equisetum hyemale chloroplast
107NC_020152AAAC36466647813Quercus rubra plastid
108NC_020341AAAC3962639627513Arundinaria gigantea chloroplast
109NC_020361AAAC3806348064411Podocarpus totara chloroplast
110NC_020371AAAC3240302404112Pavlova lutheri chloroplast
111NC_020438AAAC311810211811312Gonium pectorale chloroplast
112NC_020460AAAC3834908350011Euglena viridis culture-collection ATCC:PRA110 chloroplast
113NC_020795AAAC33824383512Chondrus crispus plastid complete genome
114NC_020795AAAC3185281853811Chondrus crispus plastid complete genome
115NC_021075AAAC316760616761611Calliarthron tuberculosum chloroplast
116NC_021091AAAC3406164062712Vigna angularis chloroplast DNA
117NC_021102AAAC3361803619112Pachycladon cheesemanii chloroplast
118NC_021102AAAC311096911097911Pachycladon cheesemanii chloroplast
119NC_021109AAAC3801498016012Pleodorina starrii plastid
120NC_021109AAAC314650014651011Pleodorina starrii plastid
121NC_021109AAAC323403823404811Pleodorina starrii plastid
122NC_021111AAAC3864438645412Cistanche deserticola chloroplast
123NC_021189AAAC3346903470112Pyropia haitanensis voucher PH-38 chloroplast
124NC_021189AAAC310890810891912Pyropia haitanensis voucher PH-38 chloroplast
125NC_021433AAAC312084012085112Cymbidium mannii voucher KUN:YJB100602 chloroplast
126NC_021438AAAC3192301924213Gnetum montanum chloroplast
127NC_021618AAAC3818108182011Grateloupia taiwanensis plastid
128NC_021760AAAC3955709558213Triticum monococcum chloroplast
129NC_021761AAAC3940209403213Secale cereale chloroplast
130NC_021762AAAC3949459495713Triticum urartu chloroplast
131NC_022133AAAC3224362244611Aegilops tauschii chloroplast
132NC_022133AAAC3932859329713Aegilops tauschii chloroplast
133NC_022135AAAC3926919270313Aegilops speltoides isolate SPE0661 chloroplast
134NC_000926AAAC3433964340712 Guillardia theta chloroplast
135NC_000927AAAC310949110950212 Nephroselmis olivacea chloroplast
136NC_000932AAAC3367813679212 Arabidopsis thaliana chloroplast
137NC_001319AAAC31042105211 Marchantia polymorpha chloroplast
138NC_001319AAAC3116961170611 Marchantia polymorpha chloroplast
139NC_001319AAAC3184141842411 Marchantia polymorpha chloroplast
140NC_001320AAAC3932749328613 Oryza sativa Japonica Group plastid
141NC_001603AAAC3220692208012 Euglena gracilis chloroplast
142NC_001666AAAC3971269713813 Zea mays chloroplast
143NC_001840AAAC312308312309311 Cyanidium caldarium chloroplast
144NC_001865AAAC3895768958712 Chlorella vulgaris chloroplast
145NC_001865AAAC310709810710811 Chlorella vulgaris chloroplast
146NC_001879AAAC3190171902711 Nicotiana tabacum plastid
147NC_001879AAAC3705107052112 Nicotiana tabacum plastid
148NC_002652AAAC3350493505911 Euglena longa plastid
149NC_002694AAAC311101611102712 Lotus japonicus chloroplast
150NC_002762AAAC3930249303613 Triticum aestivum chloroplast
151NC_004115AAAC3441824419312 Chaetosphaeridium globosum chloroplast
152NC_004115AAAC3618256183612 Chaetosphaeridium globosum chloroplast
153NC_004561AAAC3187791878911 Atropa belladonna chloroplast
154NC_004561AAAC3707587076912 Atropa belladonna chloroplast
155NC_004799AAAC3994879949913 Cyanidioschyzon merolae strain 10D chloroplast
156NC_004799AAAC311601511602612 Cyanidioschyzon merolae strain 10D chloroplast
157NC_004993AAAC3310443105411 Calycanthus floridus var. glaucus chloroplast
158NC_005087AAAC31183119311 Physcomitrella patens subsp. patens chloroplast
159NC_005353AAAC311404911405911 Chlamydomonas reinhardtii chloroplast
160NC_005878AAAC3182801829213 Saccharum hybrid cultivar SP-80-3280 chloroplast
161NC_005973AAAC3932229323413 Oryza nivara chloroplast
162NC_006084AAAC3978379784913 Saccharum hybrid cultivar NCo 310 chloroplast
163NC_007288AAAC310089110090111 Emiliania huxleyi chloroplast
164NC_007500AAAC3190151902511 Nicotiana sylvestris chloroplast
165NC_007500AAAC3705087051912 Nicotiana sylvestris chloroplast
166NC_007602AAAC3189671897711 Nicotiana tomentosiformis chloroplast
167NC_007602AAAC3703277033812 Nicotiana tomentosiformis chloroplast
168NC_007758AAAC3242212423111 Theileria parva strain Muguga apicoplast
169NC_007758AAAC3260022601312 Theileria parva strain Muguga apicoplast
170NC_007898AAAC3186081861811 Solanum lycopersicum chloroplast
171NC_007943AAAC3186381864811 Solanum bulbocastanum chloroplast
172NC_007943AAAC3698246983512 Solanum bulbocastanum chloroplast
173NC_008096AAAC3187501876011 Solanum tuberosum chloroplast
174NC_008096AAAC3697866979712 Solanum tuberosum chloroplast
175NC_008099AAAC3326923270211 Oltmannsiellopsis viridis chloroplast
176NC_008099AAAC312242512243612 Oltmannsiellopsis viridis chloroplast
177NC_008101AAAC3356973570812 Scenedesmus obliquus chloroplast
178NC_008101AAAC3516635167311 Scenedesmus obliquus chloroplast
179NC_008101AAAC3541725418312 Scenedesmus obliquus chloroplast
180NC_008101AAAC3701977020812 Scenedesmus obliquus chloroplast
181NC_008101AAAC313646813647811 Scenedesmus obliquus chloroplast
182NC_008114AAAC31019102911 Pseudendoclonium akinetum chloroplast
183NC_008114AAAC34346435611 Pseudendoclonium akinetum chloroplast
184NC_008114AAAC312260512261612 Pseudendoclonium akinetum chloroplast
185NC_008114AAAC312427612428712 Pseudendoclonium akinetum chloroplast
186NC_008114AAAC313828413829411 Pseudendoclonium akinetum chloroplast
187NC_008114AAAC314914014915011 Pseudendoclonium akinetum chloroplast
188NC_008114AAAC315116015117011 Pseudendoclonium akinetum chloroplast
189NC_008115AAAC3639456395612 Eucalyptus globulus subsp. globulus chloroplast
190NC_008116AAAC3342323424312 Staurastrum punctulatum chloroplast
191NC_008116AAAC3452404525112 Staurastrum punctulatum chloroplast
192NC_008116AAAC3696286963811 Staurastrum punctulatum chloroplast
193NC_008117AAAC3904239043412 Zygnema circumcarinatum chloroplast
194NC_008155AAAC3932279323913 Oryza sativa Indica Group chloroplast
195NC_008235AAAC3600796009012 Populus alba chloroplast
196NC_008289AAAC3420674207711 Ostreococcus tauri chloroplast
197NC_008289AAAC3421604217011 Ostreococcus tauri chloroplast
198NC_008334AAAC3101111012111 Citrus sinensis chloroplast
199NC_008372AAAC3767577676711 Stigeoclonium helveticum chloroplast
200NC_008372AAAC313871413872411 Stigeoclonium helveticum chloroplast
201NC_008372AAAC318368418369411 Stigeoclonium helveticum chloroplast
202NC_008407AAAC3102981031013 Jasminum nudiflorum chloroplast
203NC_008408AAAC3139071391812 Bigelowiella natans plastid
204NC_008588AAAC3208652087511 Phaeodactylum tricornutum chloroplast
205NC_008589AAAC311379711380812 Thalassiosira pseudonana chloroplast
206NC_008590AAAC3946589467013 Hordeum vulgare subsp. vulgare chloroplast
207NC_008591AAAC3947379474913 Agrostis stolonifera chloroplast
208NC_008602AAAC3980039801513 Sorghum bicolor chloroplast
209NC_008788AAAC311984411985512 Nuphar advena chloroplast
210NC_009143AAAC3604736048412 Populus trichocarpa chloroplast
211NC_009265AAAC3175141752411 Aethionema cordifolium chloroplast
212NC_009265AAAC3356633567311 Aethionema cordifolium chloroplast
213NC_009265AAAC311083011084011 Aethionema cordifolium chloroplast
214NC_009266AAAC3175381754811 Aethionema grandiflorum chloroplast
215NC_009266AAAC311089111090111 Aethionema grandiflorum chloroplast
216NC_009267AAAC3364173642812 Olimarabidopsis pumila chloroplast
217NC_009267AAAC311129511130511 Olimarabidopsis pumila chloroplast
218NC_009268AAAC3360053601612 Arabis hirsuta chloroplast
219NC_009269AAAC3366773668711 Barbarea verna chloroplast
220NC_009269AAAC311086111087111 Barbarea verna chloroplast
221NC_009270AAAC3362263623712 Capsella bursa-pastoris chloroplast
222NC_009270AAAC311111811112811 Capsella bursa-pastoris chloroplast
223NC_009271AAAC311154011155011 Crucihimalaya wallichii chloroplast
224NC_009272AAAC3357693578012 Draba nemorosa chloroplast
225NC_009273AAAC3364093642012 Lepidium virginicum chloroplast
226NC_009273AAAC311131911132911 Lepidium virginicum chloroplast
227NC_009274AAAC3353313534212 Lobularia maritima chloroplast
228NC_009275AAAC3364363644712 Nasturtium officinale chloroplast
229NC_009275AAAC311169811170811 Nasturtium officinale chloroplast
230NC_009681AAAC315041115042111 Leptosira terrestris chloroplast
231NC_009681AAAC318259118260111 Leptosira terrestris chloroplast
232NC_009766AAAC3581265813712 Cuscuta reflexa chloroplast
233NC_009950AAAC3436984370912 Lolium perenne chloroplast
234NC_009963AAAC3605466055712 Cuscuta exaltata chloroplast
235NC_010109AAAC36085609713 Lemna minor chloroplast
236NC_010323AAAC3383843839411 Carica papaya chloroplast
237NC_010654AAAC3313293133911 Welwitschia mirabilis chloroplast
238NC_010772AAAC315421115422111 Heterosigma akashiwo chloroplast
239NC_011031AAAC34066407611 Oedogonium cardiacum chloroplast
240NC_011031AAAC314984914986012 Oedogonium cardiacum chloroplast
241NC_011032AAAC3929969300813 Brachypodium distachyon chloroplast
242NC_011163AAAC311134811135912 Cicer arietinum chloroplast
243NC_011713AAAC3942169422813 Festuca arundinacea chloroplast
244NC_011942AAAC3591725918211 Gnetum parvifolium chloroplast
245NC_011942AAAC3827138272311 Gnetum parvifolium chloroplast
246NC_011954AAAC3239632397412 Ephedra equisetina chloroplast
247NC_012101AAAC3614186142912 Monomastix sp. OKE-1 chloroplast
248NC_012224AAAC3900219003111 Jatropha curcas chloroplast
249NC_012575AAAC3118181182912 Micromonas sp. RCC299 chloroplast
250NC_012927AAAC3965119652313 Bambusa oldhamii chloroplast
251NC_012978AAAC3596845969411 Parachlorella kessleri chloroplast
252NC_012978AAAC3859518596212 Parachlorella kessleri chloroplast
253NC_013088AAAC3966009661213 Dendrocalamus latiflorus chloroplast
254NC_013273AAAC3975409755213 Coix lacryma-jobi chloroplast
255NC_013359AAAC310619310620311 Bryopsis hypnoides chloroplast
256NC_013498AAAC32563257412 Ectocarpus siliculosus chloroplast
257NC_013553AAAC3657096571911 Parthenium argentatum chloroplast
258NC_014062AAAC3945399455113 Anomochloa marantoidea chloroplast
259NC_014063AAAC310874410875411 Lathyrus sativus chloroplast