Chloroplast Motifs - Imperfect GCA Repeats
| S.No | Sequence ID | Motif | Iterations | Start | End | Tract Length | Sequence Name |
| 1 | NC_011087 | GCA | 5 | 399378 | 399392 | 15 | Paulinella chromatophora chromatophore |
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| 2 | NC_011087 | GCA | 5 | 1003713 | 1003727 | 15 | Paulinella chromatophora chromatophore |
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| 3 | NC_004799 | GCA | 5 | 7675 | 7689 | 15 | Cyanidioschyzon merolae strain 10D chloroplast |
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| 4 | NC_008336 | GCA | 5 | 1067 | 1081 | 15 | Nandina domestica chloroplast |
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| 5 | NC_011087 | GCA | 4 | 91682 | 91693 | 12 | Paulinella chromatophora chromatophore |
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| 6 | NC_011087 | GCA | 4 | 441165 | 441176 | 12 | Paulinella chromatophora chromatophore |
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| 7 | NC_011087 | GCA | 4 | 691758 | 691769 | 12 | Paulinella chromatophora chromatophore |
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| 8 | NC_011087 | GCA | 4 | 715457 | 715468 | 12 | Paulinella chromatophora chromatophore |
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| 9 | NC_011087 | GCA | 4 | 931216 | 931227 | 12 | Paulinella chromatophora chromatophore |
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| 10 | NC_014267 | GCA | 4 | 15145 | 15156 | 12 | Kryptoperidinium foliaceum chloroplast |
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| 11 | NC_014267 | GCA | 4 | 27469 | 27480 | 12 | Kryptoperidinium foliaceum chloroplast |
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| 12 | NC_014287 | GCA | 4 | 13067 | 13078 | 12 | Durinskia baltica chloroplast |
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| 13 | NC_014346 | GCA | 4 | 390540 | 390551 | 12 | Floydiella terrestris chloroplast |
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| 14 | NC_014348 | GCA | 4 | 72659 | 72670 | 12 | Pteridium aquilinum subsp. aquilinum chloroplast |
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| 15 | NC_014592 | GCA | 4 | 113915 | 113926 | 12 | Cheilanthes lindheimeri chloroplast |
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| 16 | NC_014674 | GCA | 4 | 45506 | 45517 | 12 | Castanea mollissima chloroplast |
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| 17 | NC_014676 | GCA | 4 | 42909 | 42919 | 11 | Theobroma cacao chloroplast |
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| 18 | NC_014697 | GCA | 4 | 41951 | 41962 | 12 | Prunus persica chloroplast |
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| 19 | NC_014807 | GCA | 4 | 43960 | 43971 | 12 | Corynocarpus laevigata chloroplast |
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| 20 | NC_015084 | GCA | 4 | 62393 | 62405 | 13 | Coccomyxa sp. C-169 plastid |
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| 21 | NC_015084 | GCA | 4 | 117257 | 117267 | 11 | Coccomyxa sp. C-169 plastid |
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| 22 | NC_015139 | GCA | 4 | 39786 | 39797 | 12 | Brassica rapa subsp. pekinensis chloroplast |
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| 23 | NC_015206 | GCA | 4 | 41510 | 41521 | 12 | Fragaria vesca subsp. vesca chloroplast |
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| 24 | NC_015308 | GCA | 4 | 44114 | 44125 | 12 | Hevea brasiliensis chloroplast |
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| 25 | NC_015401 | GCA | 4 | 42364 | 42375 | 12 | Olea europaea subsp. europaea plastid |
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| 26 | NC_015403 | GCA | 4 | 119833 | 119844 | 12 | Fistulifera sp. JPCC DA0580 chloroplast |
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| 27 | NC_015604 | GCA | 4 | 42364 | 42375 | 12 | Olea europaea subsp. cuspidata chloroplast |
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| 28 | NC_015605 | GCA | 4 | 44808 | 44819 | 12 | Nelumbo lutea chloroplast |
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| 29 | NC_015608 | GCA | 4 | 42423 | 42434 | 12 | Olea woodiana subsp. woodiana chloroplast |
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| 30 | NC_015610 | GCA | 4 | 44774 | 44785 | 12 | Nelumbo nucifera chloroplast |
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| 31 | NC_015621 | GCA | 4 | 40109 | 40120 | 12 | Ageratina adenophora chloroplast |
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| 32 | NC_015623 | GCA | 4 | 42374 | 42385 | 12 | Olea europaea subsp. maroccana chloroplast |
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| 33 | NC_015892 | GCA | 4 | 43107 | 43118 | 12 | Magnolia kwangsiensis chloroplast |
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| 34 | NC_015983 | GCA | 4 | 42795 | 42806 | 12 | Cucumis melo subsp. melo chloroplast |
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| 35 | NC_015996 | GCA | 4 | 43462 | 43473 | 12 | Pyrus pyrifolia chloroplast |
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| 36 | NC_016069 | GCA | 4 | 48290 | 48301 | 12 | Picea morrisonicola chloroplast |
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| 37 | NC_016433 | GCA | 4 | 41120 | 41131 | 12 | Sesamum indicum chloroplast |
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| 38 | NC_016468 | GCA | 4 | 41128 | 41138 | 11 | Boea hygrometrica chloroplast |
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| 39 | NC_016727 | GCA | 4 | 38596 | 38607 | 12 | Silene vulgaris chloroplast |
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| 40 | NC_016729 | GCA | 4 | 37101 | 37112 | 12 | Silene conica chloroplast |
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| 41 | NC_016730 | GCA | 4 | 38724 | 38735 | 12 | Silene latifolia chloroplast |
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| 42 | NC_016731 | GCA | 4 | 24496 | 24507 | 12 | Synedra acus chloroplast |
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| 43 | NC_016734 | GCA | 4 | 39733 | 39744 | 12 | Brassica napus chloroplast |
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| 44 | NC_016736 | GCA | 4 | 44959 | 44970 | 12 | Ricinus communis chloroplast |
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| 45 | NC_016921 | GCA | 4 | 42003 | 42014 | 12 | Pentactina rupicola chloroplast |
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| 46 | NC_016927 | GCA | 4 | 40043 | 40054 | 12 | Oryza meridionalis chloroplast |
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| 47 | NC_017602 | GCA | 4 | 40740 | 40751 | 12 | Elaeis guineensis chloroplast |
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| 48 | NC_017754 | GCA | 4 | 32062 | 32073 | 12 | Eutreptiella gymnastica plastid |
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| 49 | NC_017835 | GCA | 4 | 40036 | 40047 | 12 | Oryza rufipogon chloroplast |
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| 50 | NC_018357 | GCA | 4 | 43186 | 43197 | 12 | Magnolia denudata chloroplast |
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| 51 | NC_018541 | GCA | 4 | 41816 | 41827 | 12 | Elodea canadensis chloroplast |
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| 52 | NC_018565 | GCA | 4 | 40479 | 40490 | 12 | Pachycladon enysii chloroplast |
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| 53 | NC_018569 | GCA | 4 | 90388 | 90398 | 11 | Trebouxiophyceae sp. MX-AZ01 chloroplast |
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| 54 | NC_018766 | GCA | 4 | 41533 | 41544 | 12 | Fragaria vesca subsp. bracteata chloroplast |
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| 55 | NC_018767 | GCA | 4 | 41518 | 41529 | 12 | Fragaria mandshurica plastid |
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| 56 | NC_019601 | GCA | 4 | 41469 | 41480 | 12 | Fragaria chiloensis chloroplast |
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| 57 | NC_019602 | GCA | 4 | 41500 | 41511 | 12 | Fragaria virginiana chloroplast |
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| 58 | NC_019616 | GCA | 4 | 56633 | 56644 | 12 | Vaccinium macrocarpon plastid |
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| 59 | NC_020019 | GCA | 4 | 42462 | 42473 | 12 | Camellia sinensis chloroplast |
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| 60 | NC_020092 | GCA | 4 | 39895 | 39906 | 12 | Chrysanthemum x morifolium chloroplast |
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| 61 | NC_020098 | GCA | 4 | 41472 | 41483 | 12 | Tectona grandis chloroplast |
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| 62 | NC_020147 | GCA | 4 | 26757 | 26768 | 12 | Ophioglossum californicum chloroplast |
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| 63 | NC_020152 | GCA | 4 | 45504 | 45515 | 12 | Quercus rubra plastid |
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| 64 | NC_020316 | GCA | 4 | 43304 | 43315 | 12 | Magnolia officinalis chloroplast |
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| 65 | NC_020317 | GCA | 4 | 43301 | 43312 | 12 | Magnolia officinalis subsp. biloba voucher SC001 chloroplast |
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| 66 | NC_020318 | GCA | 4 | 42919 | 42930 | 12 | Magnolia grandiflora voucher NJ016 chloroplast |
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| 67 | NC_020320 | GCA | 4 | 39909 | 39920 | 12 | Chrysanthemum indicum voucher HeN001 chloroplast |
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| 68 | NC_020362 | GCA | 4 | 44717 | 44728 | 12 | Heliconia collinsiana plastid |
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| 69 | NC_020363 | GCA | 4 | 41971 | 41982 | 12 | Zingiber spectabile plastid |
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| 70 | NC_020364 | GCA | 4 | 40726 | 40737 | 12 | Pseudophoenix vinifera plastid |
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| 71 | NC_020365 | GCA | 4 | 40609 | 40620 | 12 | Calamus caryotoides plastid |
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| 72 | NC_020366 | GCA | 4 | 41400 | 41411 | 12 | Bismarckia nobilis plastid |
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| 73 | NC_020367 | GCA | 4 | 42480 | 42491 | 12 | Dasypogon bromeliifolius plastid |
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| 74 | NC_020371 | GCA | 4 | 81145 | 81156 | 12 | Pavlova lutheri chloroplast |
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| 75 | NC_020431 | GCA | 4 | 39879 | 39889 | 11 | Salvia miltiorrhiza chloroplast |
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| 76 | NC_020460 | GCA | 4 | 62977 | 62988 | 12 | Euglena viridis culture-collection ATCC:PRA110 chloroplast |
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| 77 | NC_020607 | GCA | 4 | 39911 | 39922 | 12 | Artemisia frigida chloroplast |
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| 78 | NC_021075 | GCA | 4 | 75967 | 75977 | 11 | Calliarthron tuberculosum chloroplast |
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| 79 | NC_021101 | GCA | 4 | 41215 | 41226 | 12 | Francoa sonchifolia plastid |
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| 80 | NC_021102 | GCA | 4 | 40045 | 40056 | 12 | Pachycladon cheesemanii chloroplast |
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| 81 | NC_021121 | GCA | 4 | 41664 | 41675 | 12 | Ardisia polysticta chloroplast |
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| 82 | NC_021189 | GCA | 4 | 103440 | 103450 | 11 | Pyropia haitanensis voucher PH-38 chloroplast |
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| 83 | NC_021372 | GCA | 4 | 42372 | 42383 | 12 | Pharus latifolius chloroplast |
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| 84 | NC_021425 | GCA | 4 | 43183 | 43194 | 12 | Tetracentron sinense chloroplast |
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| 85 | NC_021426 | GCA | 4 | 44336 | 44347 | 12 | Trochodendron aralioides chloroplast |
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| 86 | NC_021449 | GCA | 4 | 39786 | 39797 | 12 | Utricularia gibba chloroplast |
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| 87 | NC_021455 | GCA | 4 | 41690 | 41701 | 12 | Prinsepia utilis plastid |
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| 88 | NC_021936 | GCA | 4 | 44429 | 44440 | 12 | Najas flexilis chloroplast |
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| 89 | NC_022099 | GCA | 4 | 104009 | 104020 | 12 | Medicago truncatula cultivar Jemalong 2HA plastid |
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| 90 | NC_022100 | GCA | 4 | 103816 | 103827 | 12 | Medicago truncatula cultivar Borung plastid |
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| 91 | NC_000927 | GCA | 4 | 6938 | 6949 | 12 | Nephroselmis olivacea chloroplast |
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| 92 | NC_000932 | GCA | 4 | 40647 | 40658 | 12 | Arabidopsis thaliana chloroplast |
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| 93 | NC_001319 | GCA | 4 | 45997 | 46008 | 12 | Marchantia polymorpha chloroplast |
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| 94 | NC_001320 | GCA | 4 | 40040 | 40051 | 12 | Oryza sativa Japonica Group plastid |
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| 95 | NC_001666 | GCA | 4 | 42394 | 42405 | 12 | Zea mays chloroplast |
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| 96 | NC_001675 | GCA | 4 | 50319 | 50330 | 12 | Cyanophora paradoxa cyanelle |
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| 97 | NC_002202 | GCA | 4 | 39342 | 39353 | 12 | Spinacia oleracea plastid |
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| 98 | NC_003119 | GCA | 4 | 104009 | 104020 | 12 | Medicago truncatula chloroplast |
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| 99 | NC_004799 | GCA | 4 | 68877 | 68888 | 12 | Cyanidioschyzon merolae strain 10D chloroplast |
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| 100 | NC_004799 | GCA | 4 | 90056 | 90066 | 11 | Cyanidioschyzon merolae strain 10D chloroplast |
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| 101 | NC_004799 | GCA | 4 | 119424 | 119435 | 12 | Cyanidioschyzon merolae strain 10D chloroplast |
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| 102 | NC_004993 | GCA | 4 | 41662 | 41673 | 12 | Calycanthus floridus var. glaucus chloroplast |
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| 103 | NC_005087 | GCA | 4 | 14682 | 14694 | 13 | Physcomitrella patens subsp. patens chloroplast |
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| 104 | NC_005878 | GCA | 4 | 104572 | 104583 | 12 | Saccharum hybrid cultivar SP-80-3280 chloroplast |
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| 105 | NC_005973 | GCA | 4 | 39974 | 39985 | 12 | Oryza nivara chloroplast |
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| 106 | NC_006050 | GCA | 4 | 44140 | 44151 | 12 | Nymphaea alba chloroplast |
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| 107 | NC_006084 | GCA | 4 | 42945 | 42956 | 12 | Saccharum hybrid cultivar NCo 310 chloroplast |
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| 108 | NC_006137 | GCA | 4 | 162338 | 162349 | 12 | Gracilaria tenuistipitata var. liui chloroplast |
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| 109 | NC_007144 | GCA | 4 | 42777 | 42788 | 12 | Cucumis sativus chloroplast |
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| 110 | NC_007288 | GCA | 4 | 7588 | 7598 | 11 | Emiliania huxleyi chloroplast |
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| 111 | NC_007407 | GCA | 4 | 41065 | 41076 | 12 | Acorus calamus plastid |
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| 112 | NC_007578 | GCA | 4 | 40243 | 40254 | 12 | Lactuca sativa chloroplast |
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| 113 | NC_007932 | GCA | 4 | 65792 | 65803 | 12 | Porphyra yezoensis chloroplast |
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| 114 | NC_007957 | GCA | 4 | 44274 | 44285 | 12 | Vitis vinifera chloroplast |
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| 115 | NC_007977 | GCA | 4 | 40317 | 40328 | 12 | Helianthus annuus chloroplast |
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| 116 | NC_008097 | GCA | 4 | 162255 | 162265 | 11 | Chara vulgaris chloroplast |
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| 117 | NC_008101 | GCA | 4 | 3489 | 3500 | 12 | Scenedesmus obliquus chloroplast |
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| 118 | NC_008116 | GCA | 4 | 126120 | 126131 | 12 | Staurastrum punctulatum chloroplast |
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| 119 | NC_008117 | GCA | 4 | 47167 | 47178 | 12 | Zygnema circumcarinatum chloroplast |
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| 120 | NC_008155 | GCA | 4 | 40000 | 40011 | 12 | Oryza sativa Indica Group chloroplast |
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| 121 | NC_008235 | GCA | 4 | 40556 | 40567 | 12 | Populus alba chloroplast |
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| 122 | NC_008326 | GCA | 4 | 43288 | 43299 | 12 | Liriodendron tulipifera chloroplast |
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| 123 | NC_008335 | GCA | 4 | 44922 | 44933 | 12 | Platanus occidentalis chloroplast |
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| 124 | NC_008336 | GCA | 4 | 41558 | 41569 | 12 | Nandina domestica chloroplast |
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| 125 | NC_008359 | GCA | 4 | 42574 | 42585 | 12 | Morus indica chloroplast |
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| 126 | NC_008407 | GCA | 4 | 43239 | 43250 | 12 | Jasminum nudiflorum chloroplast |
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| 127 | NC_008456 | GCA | 4 | 43288 | 43299 | 12 | Drimys granadensis chloroplast |
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| 128 | NC_008535 | GCA | 4 | 41190 | 41201 | 12 | Coffea arabica chloroplast |
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| 129 | NC_008591 | GCA | 4 | 40355 | 40366 | 12 | Agrostis stolonifera chloroplast |
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| 130 | NC_008602 | GCA | 4 | 43164 | 43175 | 12 | Sorghum bicolor chloroplast |
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| 131 | NC_008788 | GCA | 4 | 44307 | 44318 | 12 | Nuphar advena chloroplast |
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| 132 | NC_008796 | GCA | 4 | 40675 | 40686 | 12 | Ranunculus macranthus chloroplast |
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| 133 | NC_008822 | GCA | 4 | 23101 | 23112 | 12 | Chlorokybus atmophyticus chloroplast |
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| 134 | NC_008822 | GCA | 4 | 68858 | 68869 | 12 | Chlorokybus atmophyticus chloroplast |
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| 135 | NC_009143 | GCA | 4 | 40870 | 40881 | 12 | Populus trichocarpa chloroplast |
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| 136 | NC_009265 | GCA | 4 | 40231 | 40242 | 12 | Aethionema cordifolium chloroplast |
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| 137 | NC_009266 | GCA | 4 | 40296 | 40307 | 12 | Aethionema grandiflorum chloroplast |
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| 138 | NC_009267 | GCA | 4 | 40283 | 40294 | 12 | Olimarabidopsis pumila chloroplast |
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| 139 | NC_009268 | GCA | 4 | 39868 | 39879 | 12 | Arabis hirsuta chloroplast |
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| 140 | NC_009269 | GCA | 4 | 35009 | 35020 | 12 | Barbarea verna chloroplast |
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| 141 | NC_009269 | GCA | 4 | 40534 | 40545 | 12 | Barbarea verna chloroplast |
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| 142 | NC_009270 | GCA | 4 | 40092 | 40103 | 12 | Capsella bursa-pastoris chloroplast |
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| 143 | NC_009271 | GCA | 4 | 40262 | 40273 | 12 | Crucihimalaya wallichii chloroplast |
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| 144 | NC_009272 | GCA | 4 | 39638 | 39649 | 12 | Draba nemorosa chloroplast |
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| 145 | NC_009273 | GCA | 4 | 34717 | 34728 | 12 | Lepidium virginicum chloroplast |
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| 146 | NC_009273 | GCA | 4 | 40272 | 40283 | 12 | Lepidium virginicum chloroplast |
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| 147 | NC_009274 | GCA | 4 | 39195 | 39206 | 12 | Lobularia maritima chloroplast |
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| 148 | NC_009274 | GCA | 4 | 119690 | 119702 | 13 | Lobularia maritima chloroplast |
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| 149 | NC_009275 | GCA | 4 | 40300 | 40311 | 12 | Nasturtium officinale chloroplast |
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| 150 | NC_009598 | GCA | 4 | 41978 | 41989 | 12 | Chloranthus spicatus chloroplast |
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| 151 | NC_009599 | GCA | 4 | 43294 | 43305 | 12 | Buxus microphylla chloroplast |
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| 152 | NC_009601 | GCA | 4 | 40231 | 40242 | 12 | Dioscorea elephantipes chloroplast |
|---|
| 153 | NC_009681 | GCA | 4 | 22833 | 22844 | 12 | Leptosira terrestris chloroplast |
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| 154 | NC_009766 | GCA | 4 | 35154 | 35165 | 12 | Cuscuta reflexa chloroplast |
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| 155 | NC_009808 | GCA | 4 | 28936 | 28947 | 12 | Ipomoea purpurea chloroplast |
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| 156 | NC_009808 | GCA | 4 | 42217 | 42228 | 12 | Ipomoea purpurea chloroplast |
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| 157 | NC_009962 | GCA | 4 | 41894 | 41905 | 12 | Ceratophyllum demersum chloroplast |
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| 158 | NC_009963 | GCA | 4 | 36605 | 36616 | 12 | Cuscuta exaltata chloroplast |
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| 159 | NC_010093 | GCA | 4 | 40745 | 40756 | 12 | Acorus americanus chloroplast |
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| 160 | NC_010433 | GCA | 4 | 43344 | 43355 | 12 | Manihot esculenta chloroplast |
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| 161 | NC_010601 | GCA | 4 | 40067 | 40078 | 12 | Guizotia abyssinica chloroplast |
|---|
| 162 | NC_010654 | GCA | 4 | 13051 | 13062 | 12 | Welwitschia mirabilis chloroplast |
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| 163 | NC_010772 | GCA | 4 | 38138 | 38149 | 12 | Heterosigma akashiwo chloroplast |
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| 164 | NC_010772 | GCA | 4 | 64016 | 64027 | 12 | Heterosigma akashiwo chloroplast |
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| 165 | NC_010776 | GCA | 4 | 40661 | 40672 | 12 | Fagopyrum esculentum subsp. ancestrale chloroplast |
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| 166 | NC_011600 | GCA | 4 | 95495 | 95506 | 12 | Vaucheria litorea chloroplast |
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| 167 | NC_011828 | GCA | 4 | 54827 | 54838 | 12 | Trifolium subterraneum chloroplast |
|---|
| 168 | NC_011954 | GCA | 4 | 8000 | 8011 | 12 | Ephedra equisetina chloroplast |
|---|
| 169 | NC_012052 | GCA | 4 | 42798 | 42809 | 12 | Syntrichia ruralis chloroplast |
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| 170 | NC_012224 | GCA | 4 | 45586 | 45597 | 12 | Jatropha curcas chloroplast |
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| 171 | NC_012615 | GCA | 4 | 37661 | 37672 | 12 | Megaleranthis saniculifolia chloroplast |
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| 172 | NC_012615 | GCA | 4 | 43146 | 43157 | 12 | Megaleranthis saniculifolia chloroplast |
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| 173 | NC_013086 | GCA | 4 | 99016 | 99027 | 12 | Selaginella moellendorffii plastid |
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| 174 | NC_013273 | GCA | 4 | 42654 | 42665 | 12 | Coix lacryma-jobi chloroplast |
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| 175 | NC_013553 | GCA | 4 | 40779 | 40790 | 12 | Parthenium argentatum chloroplast |
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| 176 | NC_013823 | GCA | 4 | 43271 | 43282 | 12 | Typha latifolia chloroplast |
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| 177 | NC_013991 | GCA | 4 | 41159 | 41170 | 12 | Phoenix dactylifera chloroplast |
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| 178 | NC_014057 | GCA | 4 | 32710 | 32721 | 12 | Pisum sativum chloroplast |
|---|
| 179 | NC_013707 | GCA | 4 | 42338 | 42349 | 12 | Olea europaea chloroplast |
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