Chloroplast Motifs - Imperfect CTAT Repeats
| S.No | Sequence ID | Motif | Iterations | Start | End | Tract Length | Sequence Name |
| 1 | NC_011954 | CTAT | 7 | 34738 | 34765 | 28 | Ephedra equisetina chloroplast |
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| 2 | NC_014676 | CTAT | 4 | 120971 | 120985 | 15 | Theobroma cacao chloroplast |
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| 3 | NC_020319 | CTAT | 4 | 232 | 247 | 16 | Cycas revoluta chloroplast |
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| 4 | NC_020319 | CTAT | 4 | 138876 | 138891 | 16 | Cycas revoluta chloroplast |
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| 5 | NC_020319 | CTAT | 4 | 162377 | 162392 | 16 | Cycas revoluta chloroplast |
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| 6 | NC_020361 | CTAT | 4 | 42803 | 42818 | 16 | Podocarpus totara chloroplast |
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| 7 | NC_021091 | CTAT | 4 | 120485 | 120500 | 16 | Vigna angularis chloroplast DNA |
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| 8 | NC_021372 | CTAT | 4 | 18852 | 18868 | 17 | Pharus latifolius chloroplast |
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| 9 | NC_000927 | CTAT | 4 | 197774 | 197788 | 15 | Nephroselmis olivacea chloroplast |
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| 10 | NC_009618 | CTAT | 4 | 114877 | 114892 | 16 | Cycas taitungensis chloroplast |
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| 11 | NC_009618 | CTAT | 4 | 138382 | 138397 | 16 | Cycas taitungensis chloroplast |
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| 12 | NC_009962 | CTAT | 4 | 4669 | 4684 | 16 | Ceratophyllum demersum chloroplast |
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| 13 | NC_011930 | CTAT | 4 | 31778 | 31793 | 16 | Keteleeria davidiana chloroplast |
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| 14 | NC_012818 | CTAT | 4 | 28914 | 28929 | 16 | Alsophila spinulosa chloroplast |
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| 15 | NC_011087 | CTAT | 3 | 577478 | 577489 | 12 | Paulinella chromatophora chromatophore |
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| 16 | NC_011087 | CTAT | 3 | 833093 | 833103 | 11 | Paulinella chromatophora chromatophore |
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| 17 | NC_011087 | CTAT | 3 | 857168 | 857179 | 12 | Paulinella chromatophora chromatophore |
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| 18 | NC_014345 | CTAT | 3 | 3315 | 3325 | 11 | Alveolata sp. CCMP3155 chloroplast |
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| 19 | NC_014569 | CTAT | 3 | 98836 | 98847 | 12 | Erodium texanum plastid |
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| 20 | NC_014570 | CTAT | 3 | 108029 | 108040 | 12 | Eucalyptus grandis chloroplast |
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| 21 | NC_014573 | CTAT | 3 | 140876 | 140887 | 12 | Geranium palmatum plastid |
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| 22 | NC_014575 | CTAT | 3 | 78236 | 78247 | 12 | Cedrus deodara chloroplast |
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| 23 | NC_014582 | CTAT | 3 | 435 | 446 | 12 | Monsonia speciosa plastid |
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| 24 | NC_014582 | CTAT | 3 | 47205 | 47215 | 11 | Monsonia speciosa plastid |
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| 25 | NC_014582 | CTAT | 3 | 104865 | 104876 | 12 | Monsonia speciosa plastid |
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| 26 | NC_014589 | CTAT | 3 | 64470 | 64482 | 13 | Cathaya argyrophylla chloroplast |
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| 27 | NC_014675 | CTAT | 3 | 111583 | 111594 | 12 | Isoetes flaccida chloroplast |
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| 28 | NC_015083 | CTAT | 3 | 42289 | 42301 | 13 | Erodium carvifolium chloroplast |
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| 29 | NC_015403 | CTAT | 3 | 75054 | 75066 | 13 | Fistulifera sp. JPCC DA0580 chloroplast |
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| 30 | NC_015543 | CTAT | 3 | 116763 | 116774 | 12 | Jacobaea vulgaris chloroplast |
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| 31 | NC_015803 | CTAT | 3 | 97420 | 97431 | 12 | Indocalamus longiauritus plastid |
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| 32 | NC_015817 | CTAT | 3 | 97366 | 97377 | 12 | Phyllostachys edulis chloroplast |
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| 33 | NC_015820 | CTAT | 3 | 97423 | 97434 | 12 | Acidosasa purpurea chloroplast |
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| 34 | NC_015826 | CTAT | 3 | 97387 | 97398 | 12 | Phyllostachys nigra var. henonis chloroplast |
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| 35 | NC_015830 | CTAT | 3 | 97144 | 97155 | 12 | Bambusa emeiensis chloroplast |
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| 36 | NC_015831 | CTAT | 3 | 97275 | 97286 | 12 | Ferrocalamus rimosivaginus plastid |
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| 37 | NC_015990 | CTAT | 3 | 96925 | 96936 | 12 | Panicum virgatum chloroplast |
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| 38 | NC_016069 | CTAT | 3 | 115584 | 115596 | 13 | Picea morrisonicola chloroplast |
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| 39 | NC_016677 | CTAT | 3 | 95122 | 95133 | 12 | Leersia tisserantii plastid |
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| 40 | NC_016699 | CTAT | 3 | 97381 | 97392 | 12 | Phyllostachys propinqua chloroplast |
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| 41 | NC_016718 | CTAT | 3 | 95274 | 95285 | 12 | Rhynchoryza subulata plastid |
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| 42 | NC_016727 | CTAT | 3 | 22408 | 22419 | 12 | Silene vulgaris chloroplast |
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| 43 | NC_016728 | CTAT | 3 | 21659 | 21670 | 12 | Silene noctiflora chloroplast |
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| 44 | NC_016729 | CTAT | 3 | 20980 | 20991 | 12 | Silene conica chloroplast |
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| 45 | NC_016730 | CTAT | 3 | 22470 | 22481 | 12 | Silene latifolia chloroplast |
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| 46 | NC_016732 | CTAT | 3 | 51431 | 51442 | 12 | Dunaliella salina chloroplast |
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| 47 | NC_016736 | CTAT | 3 | 49477 | 49488 | 12 | Ricinus communis chloroplast |
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| 48 | NC_016927 | CTAT | 3 | 93803 | 93814 | 12 | Oryza meridionalis chloroplast |
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| 49 | NC_017609 | CTAT | 3 | 10787 | 10798 | 12 | Phalaenopsis equestris chloroplast |
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| 50 | NC_017835 | CTAT | 3 | 93791 | 93802 | 12 | Oryza rufipogon chloroplast |
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| 51 | NC_018051 | CTAT | 3 | 57165 | 57176 | 12 | Vigna unguiculata chloroplast |
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| 52 | NC_018541 | CTAT | 3 | 23381 | 23392 | 12 | Elodea canadensis chloroplast |
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| 53 | NC_018552 | CTAT | 3 | 30595 | 30606 | 12 | Capsicum annuum chloroplast |
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| 54 | NC_018565 | CTAT | 3 | 103231 | 103242 | 12 | Pachycladon enysii chloroplast |
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| 55 | NC_019616 | CTAT | 3 | 161466 | 161477 | 12 | Vaccinium macrocarpon plastid |
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| 56 | NC_019616 | CTAT | 3 | 161493 | 161504 | 12 | Vaccinium macrocarpon plastid |
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| 57 | NC_020092 | CTAT | 3 | 91 | 102 | 12 | Chrysanthemum x morifolium chloroplast |
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| 58 | NC_020319 | CTAT | 3 | 108665 | 108676 | 12 | Cycas revoluta chloroplast |
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| 59 | NC_020320 | CTAT | 3 | 81 | 92 | 12 | Chrysanthemum indicum voucher HeN001 chloroplast |
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| 60 | NC_020321 | CTAT | 3 | 122941 | 122952 | 12 | Taxus mairei voucher NN014 chloroplast |
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| 61 | NC_020341 | CTAT | 3 | 96785 | 96796 | 12 | Arundinaria gigantea chloroplast |
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| 62 | NC_020361 | CTAT | 3 | 7868 | 7878 | 11 | Podocarpus totara chloroplast |
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| 63 | NC_020361 | CTAT | 3 | 130707 | 130718 | 12 | Podocarpus totara chloroplast |
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| 64 | NC_020362 | CTAT | 3 | 30043 | 30054 | 12 | Heliconia collinsiana plastid |
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| 65 | NC_020363 | CTAT | 3 | 54562 | 54574 | 13 | Zingiber spectabile plastid |
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| 66 | NC_020438 | CTAT | 3 | 115544 | 115554 | 11 | Gonium pectorale chloroplast |
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| 67 | NC_020795 | CTAT | 3 | 177632 | 177644 | 13 | Chondrus crispus plastid complete genome |
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| 68 | NC_021075 | CTAT | 3 | 162247 | 162257 | 11 | Calliarthron tuberculosum chloroplast |
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| 69 | NC_021091 | CTAT | 3 | 57069 | 57080 | 12 | Vigna angularis chloroplast DNA |
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| 70 | NC_021102 | CTAT | 3 | 102875 | 102886 | 12 | Pachycladon cheesemanii chloroplast |
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| 71 | NC_021110 | CTAT | 3 | 8029 | 8039 | 11 | Cephalotaxus oliveri chloroplast |
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| 72 | NC_021189 | CTAT | 3 | 37320 | 37331 | 12 | Pyropia haitanensis voucher PH-38 chloroplast |
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| 73 | NC_021189 | CTAT | 3 | 184565 | 184577 | 13 | Pyropia haitanensis voucher PH-38 chloroplast |
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| 74 | NC_021372 | CTAT | 3 | 98703 | 98714 | 12 | Pharus latifolius chloroplast |
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| 75 | NC_021425 | CTAT | 3 | 28317 | 28328 | 12 | Tetracentron sinense chloroplast |
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| 76 | NC_021426 | CTAT | 3 | 29188 | 29199 | 12 | Trochodendron aralioides chloroplast |
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| 77 | NC_021429 | CTAT | 3 | 9954 | 9965 | 12 | Cymbidium aloifolium voucher KUN:YJB100604 chloroplast |
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| 78 | NC_021429 | CTAT | 3 | 27300 | 27310 | 11 | Cymbidium aloifolium voucher KUN:YJB100604 chloroplast |
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| 79 | NC_021430 | CTAT | 3 | 9987 | 9998 | 12 | Cymbidium sinense voucher KUN:YJB100605 chloroplast |
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| 80 | NC_021431 | CTAT | 3 | 10060 | 10071 | 12 | Cymbidium tortisepalum voucher KUN:HJL091027 chloroplast |
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| 81 | NC_021432 | CTAT | 3 | 9834 | 9845 | 12 | Cymbidium tracyanum voucher KUN:YJB100606 chloroplast |
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| 82 | NC_021433 | CTAT | 3 | 9941 | 9952 | 12 | Cymbidium mannii voucher KUN:YJB100602 chloroplast |
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| 83 | NC_021439 | CTAT | 3 | 91406 | 91417 | 12 | Pinus massoniana chloroplast |
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| 84 | NC_021618 | CTAT | 3 | 51981 | 51991 | 11 | Grateloupia taiwanensis plastid |
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| 85 | NC_021936 | CTAT | 3 | 54467 | 54479 | 13 | Najas flexilis chloroplast |
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| 86 | NC_022099 | CTAT | 3 | 2946 | 2956 | 11 | Medicago truncatula cultivar Jemalong 2HA plastid |
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| 87 | NC_022100 | CTAT | 3 | 2950 | 2960 | 11 | Medicago truncatula cultivar Borung plastid |
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| 88 | NC_022136 | CTAT | 3 | 99174 | 99185 | 12 | Lygodium japonicum chloroplast |
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| 89 | NC_000926 | CTAT | 3 | 89019 | 89029 | 11 | Guillardia theta chloroplast |
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| 90 | NC_001320 | CTAT | 3 | 93793 | 93804 | 12 | Oryza sativa Japonica Group plastid |
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| 91 | NC_001631 | CTAT | 3 | 91395 | 91406 | 12 | Pinus thunbergii chloroplast |
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| 92 | NC_001666 | CTAT | 3 | 97647 | 97658 | 12 | Zea mays chloroplast |
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| 93 | NC_001799 | CTAT | 3 | 12858 | 12868 | 11 | Toxoplasma gondii RH apicoplast |
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| 94 | NC_001799 | CTAT | 3 | 26536 | 26547 | 12 | Toxoplasma gondii RH apicoplast |
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| 95 | NC_001879 | CTAT | 3 | 30629 | 30640 | 12 | Nicotiana tabacum plastid |
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| 96 | NC_002186 | CTAT | 3 | 94314 | 94324 | 11 | Mesostigma viride chloroplast |
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| 97 | NC_003119 | CTAT | 3 | 2946 | 2956 | 11 | Medicago truncatula chloroplast |
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| 98 | NC_003386 | CTAT | 3 | 32973 | 32984 | 12 | Psilotum nudum chloroplast |
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| 99 | NC_004543 | CTAT | 3 | 144208 | 144218 | 11 | Anthoceros formosae chloroplast |
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| 100 | NC_004561 | CTAT | 3 | 30380 | 30391 | 12 | Atropa belladonna chloroplast |
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| 101 | NC_005878 | CTAT | 3 | 18802 | 18813 | 12 | Saccharum hybrid cultivar SP-80-3280 chloroplast |
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| 102 | NC_005973 | CTAT | 3 | 93741 | 93752 | 12 | Oryza nivara chloroplast |
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| 103 | NC_006050 | CTAT | 3 | 32400 | 32412 | 13 | Nymphaea alba chloroplast |
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| 104 | NC_006084 | CTAT | 3 | 98359 | 98370 | 12 | Saccharum hybrid cultivar NCo 310 chloroplast |
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| 105 | NC_007407 | CTAT | 3 | 112420 | 112430 | 11 | Acorus calamus plastid |
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| 106 | NC_007407 | CTAT | 3 | 112971 | 112981 | 11 | Acorus calamus plastid |
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| 107 | NC_007499 | CTAT | 3 | 10753 | 10764 | 12 | Phalaenopsis aphrodite subsp. formosana chloroplast |
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| 108 | NC_007500 | CTAT | 3 | 30627 | 30638 | 12 | Nicotiana sylvestris chloroplast |
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| 109 | NC_007602 | CTAT | 3 | 30562 | 30573 | 12 | Nicotiana tomentosiformis chloroplast |
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| 110 | NC_007898 | CTAT | 3 | 30205 | 30216 | 12 | Solanum lycopersicum chloroplast |
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| 111 | NC_007943 | CTAT | 3 | 30234 | 30245 | 12 | Solanum bulbocastanum chloroplast |
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| 112 | NC_007943 | CTAT | 3 | 42720 | 42731 | 12 | Solanum bulbocastanum chloroplast |
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| 113 | NC_008096 | CTAT | 3 | 30353 | 30364 | 12 | Solanum tuberosum chloroplast |
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| 114 | NC_008096 | CTAT | 3 | 42839 | 42850 | 12 | Solanum tuberosum chloroplast |
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| 115 | NC_008097 | CTAT | 3 | 103374 | 103384 | 11 | Chara vulgaris chloroplast |
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| 116 | NC_008115 | CTAT | 3 | 108156 | 108167 | 12 | Eucalyptus globulus subsp. globulus chloroplast |
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| 117 | NC_008117 | CTAT | 3 | 132481 | 132492 | 12 | Zygnema circumcarinatum chloroplast |
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| 118 | NC_008155 | CTAT | 3 | 93746 | 93757 | 12 | Oryza sativa Indica Group chloroplast |
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| 119 | NC_008326 | CTAT | 3 | 71556 | 71566 | 11 | Liriodendron tulipifera chloroplast |
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| 120 | NC_008334 | CTAT | 3 | 31271 | 31282 | 12 | Citrus sinensis chloroplast |
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| 121 | NC_008359 | CTAT | 3 | 47592 | 47603 | 12 | Morus indica chloroplast |
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| 122 | NC_008454 | CTAT | 3 | 30812 | 30822 | 11 | Pelargonium x hortorum chloroplast |
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| 123 | NC_008454 | CTAT | 3 | 44340 | 44350 | 11 | Pelargonium x hortorum chloroplast |
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| 124 | NC_008454 | CTAT | 3 | 178999 | 179011 | 13 | Pelargonium x hortorum chloroplast |
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| 125 | NC_008589 | CTAT | 3 | 84658 | 84669 | 12 | Thalassiosira pseudonana chloroplast |
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| 126 | NC_008602 | CTAT | 3 | 98526 | 98537 | 12 | Sorghum bicolor chloroplast |
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| 127 | NC_008788 | CTAT | 3 | 14284 | 14294 | 11 | Nuphar advena chloroplast |
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| 128 | NC_008788 | CTAT | 3 | 32363 | 32375 | 13 | Nuphar advena chloroplast |
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| 129 | NC_008796 | CTAT | 3 | 32135 | 32145 | 11 | Ranunculus macranthus chloroplast |
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| 130 | NC_009259 | CTAT | 3 | 56617 | 56628 | 12 | Phaseolus vulgaris chloroplast |
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| 131 | NC_009265 | CTAT | 3 | 102765 | 102776 | 12 | Aethionema cordifolium chloroplast |
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| 132 | NC_009266 | CTAT | 3 | 102811 | 102822 | 12 | Aethionema grandiflorum chloroplast |
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| 133 | NC_009267 | CTAT | 3 | 103209 | 103220 | 12 | Olimarabidopsis pumila chloroplast |
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| 134 | NC_009268 | CTAT | 3 | 102082 | 102093 | 12 | Arabis hirsuta chloroplast |
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| 135 | NC_009269 | CTAT | 3 | 102760 | 102771 | 12 | Barbarea verna chloroplast |
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| 136 | NC_009270 | CTAT | 3 | 103048 | 103059 | 12 | Capsella bursa-pastoris chloroplast |
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| 137 | NC_009271 | CTAT | 3 | 103458 | 103469 | 12 | Crucihimalaya wallichii chloroplast |
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| 138 | NC_009272 | CTAT | 3 | 101658 | 101669 | 12 | Draba nemorosa chloroplast |
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| 139 | NC_009273 | CTAT | 3 | 4315 | 4326 | 12 | Lepidium virginicum chloroplast |
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| 140 | NC_009273 | CTAT | 3 | 103326 | 103337 | 12 | Lepidium virginicum chloroplast |
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| 141 | NC_009274 | CTAT | 3 | 101534 | 101545 | 12 | Lobularia maritima chloroplast |
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| 142 | NC_009275 | CTAT | 3 | 103609 | 103620 | 12 | Nasturtium officinale chloroplast |
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| 143 | NC_009600 | CTAT | 3 | 31974 | 31986 | 13 | Illicium oligandrum chloroplast |
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| 144 | NC_009681 | CTAT | 3 | 6660 | 6671 | 12 | Leptosira terrestris chloroplast |
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| 145 | NC_009681 | CTAT | 3 | 107577 | 107587 | 11 | Leptosira terrestris chloroplast |
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| 146 | NC_010093 | CTAT | 3 | 112092 | 112102 | 11 | Acorus americanus chloroplast |
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| 147 | NC_010093 | CTAT | 3 | 112643 | 112653 | 11 | Acorus americanus chloroplast |
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| 148 | NC_010109 | CTAT | 3 | 19525 | 19535 | 11 | Lemna minor chloroplast |
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| 149 | NC_010323 | CTAT | 3 | 108025 | 108036 | 12 | Carica papaya chloroplast |
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| 150 | NC_010548 | CTAT | 3 | 108562 | 108573 | 12 | Cryptomeria japonica chloroplast |
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| 151 | NC_011954 | CTAT | 3 | 77221 | 77231 | 11 | Ephedra equisetina chloroplast |
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| 152 | NC_012927 | CTAT | 3 | 97033 | 97044 | 12 | Bambusa oldhamii chloroplast |
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| 153 | NC_013086 | CTAT | 3 | 31287 | 31298 | 12 | Selaginella moellendorffii plastid |
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| 154 | NC_013088 | CTAT | 3 | 97122 | 97133 | 12 | Dendrocalamus latiflorus chloroplast |
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| 155 | NC_013273 | CTAT | 3 | 98062 | 98073 | 12 | Coix lacryma-jobi chloroplast |
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| 156 | NC_013359 | CTAT | 3 | 5144 | 5154 | 11 | Bryopsis hypnoides chloroplast |
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| 157 | NC_013703 | CTAT | 3 | 42682 | 42694 | 13 | Cryptomonas paramecium plastid |
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| 158 | NC_013823 | CTAT | 3 | 28843 | 28854 | 12 | Typha latifolia chloroplast |
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| 159 | NC_013843 | CTAT | 3 | 57189 | 57200 | 12 | Vigna radiata chloroplast |
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| 160 | NC_014056 | CTAT | 3 | 9817 | 9828 | 12 | Oncidium Gower Ramsey chloroplast |
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| 161 | NC_014062 | CTAT | 3 | 95062 | 95073 | 12 | Anomochloa marantoidea chloroplast |
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