ChloroMitoSSRDB 2.0 - Database of Microsatellites from Chloroplast & Mitochondrial Genomes

Chloroplast Motifs - Imperfect CAAT Repeats

S.No	Sequence ID	Motif	Iterations	Start	End	Tract Length	Sequence Name
1	NC_016736	CAAT	4	15077	15092	16	Ricinus communis chloroplast
2	NC_008117	CAAT	4	114658	114673	16	Zygnema circumcarinatum chloroplast
3	NC_009808	CAAT	4	14081	14096	16	Ipomoea purpurea chloroplast
4	NC_011087	CAAT	3	19363	19373	11	Paulinella chromatophora chromatophore
5	NC_011087	CAAT	3	112126	112141	16	Paulinella chromatophora chromatophore
6	NC_011087	CAAT	3	214311	214321	11	Paulinella chromatophora chromatophore
7	NC_011087	CAAT	3	605767	605778	12	Paulinella chromatophora chromatophore
8	NC_011087	CAAT	3	908445	908456	12	Paulinella chromatophora chromatophore
9	NC_014287	CAAT	3	11462	11474	13	Durinskia baltica chloroplast
10	NC_014340	CAAT	3	67197	67207	11	Chromera velia strain CCMP2878 chloroplast
11	NC_014570	CAAT	3	87476	87486	11	Eucalyptus grandis chloroplast
12	NC_014573	CAAT	3	109962	109973	12	Geranium palmatum plastid
13	NC_014674	CAAT	3	89006	89016	11	Castanea mollissima chloroplast
14	NC_014675	CAAT	3	78017	78029	13	Isoetes flaccida chloroplast
15	NC_014676	CAAT	3	87944	87954	11	Theobroma cacao chloroplast
16	NC_014807	CAAT	3	87474	87484	11	Corynocarpus laevigata chloroplast
17	NC_014808	CAAT	3	124827	124838	12	Thalassiosira oceanica CCMP1005 chloroplast
18	NC_015084	CAAT	3	61950	61960	11	Coccomyxa sp. C-169 plastid
19	NC_015084	CAAT	3	144296	144307	12	Coccomyxa sp. C-169 plastid
20	NC_015113	CAAT	3	119982	119993	12	Anthriscus cerefolium chloroplast
21	NC_015139	CAAT	3	81999	82009	11	Brassica rapa subsp. pekinensis chloroplast
22	NC_015206	CAAT	3	11750	11760	11	Fragaria vesca subsp. vesca chloroplast
23	NC_015308	CAAT	3	34937	34949	13	Hevea brasiliensis chloroplast
24	NC_015308	CAAT	3	87881	87891	11	Hevea brasiliensis chloroplast
25	NC_015401	CAAT	3	85222	85232	11	Olea europaea subsp. europaea plastid
26	NC_015402	CAAT	3	47290	47302	13	Ptilidium pulcherrimum chloroplast
27	NC_015543	CAAT	3	81512	81522	11	Jacobaea vulgaris chloroplast
28	NC_015604	CAAT	3	85230	85240	11	Olea europaea subsp. cuspidata chloroplast
29	NC_015605	CAAT	3	90366	90376	11	Nelumbo lutea chloroplast
30	NC_015608	CAAT	3	85313	85323	11	Olea woodiana subsp. woodiana chloroplast
31	NC_015610	CAAT	3	90453	90463	11	Nelumbo nucifera chloroplast
32	NC_015621	CAAT	3	83144	83154	11	Ageratina adenophora chloroplast
33	NC_015623	CAAT	3	85241	85251	11	Olea europaea subsp. maroccana chloroplast
34	NC_015891	CAAT	3	89586	89596	11	Spirodela polyrhiza chloroplast
35	NC_015990	CAAT	3	15878	15890	13	Panicum virgatum chloroplast
36	NC_015996	CAAT	3	86441	86451	11	Pyrus pyrifolia chloroplast
37	NC_016065	CAAT	3	37007	37019	13	Taiwania cryptomerioides chloroplast DNA
38	NC_016068	CAAT	3	85257	85267	11	Nicotiana undulata chloroplast
39	NC_016433	CAAT	3	83819	83829	11	Sesamum indicum chloroplast
40	NC_016468	CAAT	3	83395	83405	11	Boea hygrometrica chloroplast
41	NC_016728	CAAT	3	104307	104317	11	Silene noctiflora chloroplast
42	NC_016734	CAAT	3	81748	81758	11	Brassica napus chloroplast
43	NC_016736	CAAT	3	12358	12368	11	Ricinus communis chloroplast
44	NC_016736	CAAT	3	35666	35678	13	Ricinus communis chloroplast
45	NC_016736	CAAT	3	88600	88610	11	Ricinus communis chloroplast
46	NC_016736	CAAT	3	126679	126691	13	Ricinus communis chloroplast
47	NC_016921	CAAT	3	83614	83624	11	Pentactina rupicola chloroplast
48	NC_017006	CAAT	3	29447	29457	11	Mankyua chejuensis chloroplast
49	NC_018051	CAAT	3	115490	115500	11	Vigna unguiculata chloroplast
50	NC_018114	CAAT	3	50777	50788	12	Erycina pusilla chloroplast
51	NC_018117	CAAT	3	84993	85003	11	Datura stramonium chloroplast
52	NC_018541	CAAT	3	84340	84350	11	Elodea canadensis chloroplast
53	NC_018552	CAAT	3	86057	86067	11	Capsicum annuum chloroplast
54	NC_018565	CAAT	3	82644	82654	11	Pachycladon enysii chloroplast
55	NC_018766	CAAT	3	11735	11745	11	Fragaria vesca subsp. bracteata chloroplast
56	NC_018767	CAAT	3	11762	11772	11	Fragaria mandshurica plastid
57	NC_019601	CAAT	3	11737	11747	11	Fragaria chiloensis chloroplast
58	NC_019602	CAAT	3	11737	11747	11	Fragaria virginiana chloroplast
59	NC_019616	CAAT	3	19192	19202	11	Vaccinium macrocarpon plastid
60	NC_019616	CAAT	3	90284	90294	11	Vaccinium macrocarpon plastid
61	NC_019616	CAAT	3	91937	91947	11	Vaccinium macrocarpon plastid
62	NC_019628	CAAT	3	79228	79238	11	Pellia endiviifolia chloroplast
63	NC_019649	CAAT	3	28476	28487	12	Festuca ovina plastid
64	NC_020018	CAAT	3	54052	54062	11	Monomorphina aenigmatica strain UTEX1284 chloroplast
65	NC_020019	CAAT	3	85322	85332	11	Camellia sinensis chloroplast
66	NC_020092	CAAT	3	81435	81445	11	Chrysanthemum x morifolium chloroplast
67	NC_020092	CAAT	3	87171	87182	12	Chrysanthemum x morifolium chloroplast
68	NC_020098	CAAT	3	83986	83996	11	Tectona grandis chloroplast
69	NC_020152	CAAT	3	89075	89085	11	Quercus rubra plastid
70	NC_020320	CAAT	3	81388	81398	11	Chrysanthemum indicum voucher HeN001 chloroplast
71	NC_020320	CAAT	3	87125	87136	12	Chrysanthemum indicum voucher HeN001 chloroplast
72	NC_020361	CAAT	3	59692	59702	11	Podocarpus totara chloroplast
73	NC_020361	CAAT	3	91903	91915	13	Podocarpus totara chloroplast
74	NC_020365	CAAT	3	29070	29080	11	Calamus caryotoides plastid
75	NC_020438	CAAT	3	129176	129187	12	Gonium pectorale chloroplast
76	NC_020607	CAAT	3	81396	81406	11	Artemisia frigida chloroplast
77	NC_020607	CAAT	3	87132	87143	12	Artemisia frigida chloroplast
78	NC_020795	CAAT	3	170130	170141	12	Chondrus crispus plastid complete genome
79	NC_021075	CAAT	3	100177	100188	12	Calliarthron tuberculosum chloroplast
80	NC_021075	CAAT	3	111419	111430	12	Calliarthron tuberculosum chloroplast
81	NC_021075	CAAT	3	143395	143407	13	Calliarthron tuberculosum chloroplast
82	NC_021091	CAAT	3	115910	115920	11	Vigna angularis chloroplast DNA
83	NC_021101	CAAT	3	84599	84609	11	Francoa sonchifolia plastid
84	NC_021102	CAAT	3	82269	82279	11	Pachycladon cheesemanii chloroplast
85	NC_021189	CAAT	3	102658	102668	11	Pyropia haitanensis voucher PH-38 chloroplast
86	NC_021425	CAAT	3	87092	87102	11	Tetracentron sinense chloroplast
87	NC_021426	CAAT	3	88206	88216	11	Trochodendron aralioides chloroplast
88	NC_021430	CAAT	3	47358	47369	12	Cymbidium sinense voucher KUN:YJB100605 chloroplast
89	NC_021430	CAAT	3	120069	120079	11	Cymbidium sinense voucher KUN:YJB100605 chloroplast
90	NC_021431	CAAT	3	47467	47478	12	Cymbidium tortisepalum voucher KUN:HJL091027 chloroplast
91	NC_021431	CAAT	3	120157	120167	11	Cymbidium tortisepalum voucher KUN:HJL091027 chloroplast
92	NC_021432	CAAT	3	120662	120672	11	Cymbidium tracyanum voucher KUN:YJB100606 chloroplast
93	NC_021433	CAAT	3	76128	76139	12	Cymbidium mannii voucher KUN:YJB100602 chloroplast
94	NC_021437	CAAT	3	39086	39098	13	Cunninghamia lanceolata chloroplast
95	NC_021437	CAAT	3	118571	118581	11	Cunninghamia lanceolata chloroplast
96	NC_021441	CAAT	3	37017	37029	13	Taiwania flousiana chloroplast
97	NC_021449	CAAT	3	80367	80377	11	Utricularia gibba chloroplast
98	NC_021449	CAAT	3	110874	110884	11	Utricularia gibba chloroplast
99	NC_021618	CAAT	3	24153	24163	11	Grateloupia taiwanensis plastid
100	NC_021618	CAAT	3	54277	54289	13	Grateloupia taiwanensis plastid
101	NC_021936	CAAT	3	92899	92910	12	Najas flexilis chloroplast
102	NC_022136	CAAT	3	81894	81904	11	Lygodium japonicum chloroplast
103	NC_022136	CAAT	3	138152	138162	11	Lygodium japonicum chloroplast
104	NC_000925	CAAT	3	38587	38598	12	Porphyra purpurea chloroplast
105	NC_000926	CAAT	3	35431	35441	11	Guillardia theta chloroplast
106	NC_000932	CAAT	3	82896	82906	11	Arabidopsis thaliana chloroplast
107	NC_001840	CAAT	3	67955	67966	12	Cyanidium caldarium chloroplast
108	NC_001879	CAAT	3	85312	85322	11	Nicotiana tabacum plastid
109	NC_002694	CAAT	3	80756	80766	11	Lotus japonicus chloroplast
110	NC_004115	CAAT	3	70507	70518	12	Chaetosphaeridium globosum chloroplast
111	NC_004766	CAAT	3	6527	6538	12	Adiantum capillus-veneris chloroplast
112	NC_004823	CAAT	3	10722	10733	12	Eimeria tenella strain Penn State apicoplast
113	NC_004993	CAAT	3	112566	112576	11	Calycanthus floridus var. glaucus chloroplast
114	NC_005086	CAAT	3	89523	89533	11	Amborella trichopoda chloroplast
115	NC_005353	CAAT	3	6327	6337	11	Chlamydomonas reinhardtii chloroplast
116	NC_005878	CAAT	3	78311	78323	13	Saccharum hybrid cultivar SP-80-3280 chloroplast
117	NC_006084	CAAT	3	16684	16696	13	Saccharum hybrid cultivar NCo 310 chloroplast
118	NC_006861	CAAT	3	126400	126411	12	Huperzia lucidula chloroplast
119	NC_006861	CAAT	3	143286	143297	12	Huperzia lucidula chloroplast
120	NC_007500	CAAT	3	85310	85320	11	Nicotiana sylvestris chloroplast
121	NC_007602	CAAT	3	85081	85091	11	Nicotiana tomentosiformis chloroplast
122	NC_007898	CAAT	3	84601	84611	11	Solanum lycopersicum chloroplast
123	NC_007932	CAAT	3	102741	102751	11	Porphyra yezoensis chloroplast
124	NC_007943	CAAT	3	84484	84494	11	Solanum bulbocastanum chloroplast
125	NC_007957	CAAT	3	87750	87760	11	Vitis vinifera chloroplast
126	NC_007977	CAAT	3	82245	82255	11	Helianthus annuus chloroplast
127	NC_008096	CAAT	3	84437	84447	11	Solanum tuberosum chloroplast
128	NC_008097	CAAT	3	16155	16166	12	Chara vulgaris chloroplast
129	NC_008097	CAAT	3	69071	69081	11	Chara vulgaris chloroplast
130	NC_008101	CAAT	3	24171	24181	11	Scenedesmus obliquus chloroplast
131	NC_008115	CAAT	3	87603	87613	11	Eucalyptus globulus subsp. globulus chloroplast
132	NC_008116	CAAT	3	80625	80635	11	Staurastrum punctulatum chloroplast
133	NC_008116	CAAT	3	118810	118820	11	Staurastrum punctulatum chloroplast
134	NC_008117	CAAT	3	144400	144411	12	Zygnema circumcarinatum chloroplast
135	NC_008235	CAAT	3	31306	31318	13	Populus alba chloroplast
136	NC_008325	CAAT	3	120243	120254	12	Daucus carota chloroplast
137	NC_008334	CAAT	3	86935	86945	11	Citrus sinensis chloroplast
138	NC_008335	CAAT	3	51466	51476	11	Platanus occidentalis chloroplast
139	NC_008335	CAAT	3	90799	90809	11	Platanus occidentalis chloroplast
140	NC_008336	CAAT	3	84117	84127	11	Nandina domestica chloroplast
141	NC_008359	CAAT	3	33929	33941	13	Morus indica chloroplast
142	NC_008372	CAAT	3	33440	33451	12	Stigeoclonium helveticum chloroplast
143	NC_008454	CAAT	3	107884	107894	11	Pelargonium x hortorum chloroplast
144	NC_008457	CAAT	3	86219	86229	11	Piper cenocladum chloroplast
145	NC_008535	CAAT	3	83863	83873	11	Coffea arabica chloroplast
146	NC_008589	CAAT	3	11077	11087	11	Thalassiosira pseudonana chloroplast
147	NC_008589	CAAT	3	90052	90063	12	Thalassiosira pseudonana chloroplast
148	NC_008602	CAAT	3	17068	17080	13	Sorghum bicolor chloroplast
149	NC_008796	CAAT	3	83159	83169	11	Ranunculus macranthus chloroplast
150	NC_008822	CAAT	3	30339	30349	11	Chlorokybus atmophyticus chloroplast
151	NC_008822	CAAT	3	132565	132576	12	Chlorokybus atmophyticus chloroplast
152	NC_008829	CAAT	3	43597	43608	12	Angiopteris evecta chloroplast
153	NC_009143	CAAT	3	31652	31664	13	Populus trichocarpa chloroplast
154	NC_009259	CAAT	3	114492	114502	11	Phaseolus vulgaris chloroplast
155	NC_009265	CAAT	3	82136	82146	11	Aethionema cordifolium chloroplast
156	NC_009266	CAAT	3	82207	82217	11	Aethionema grandiflorum chloroplast
157	NC_009267	CAAT	3	82602	82612	11	Olimarabidopsis pumila chloroplast
158	NC_009269	CAAT	3	82161	82171	11	Barbarea verna chloroplast
159	NC_009270	CAAT	3	82460	82470	11	Capsella bursa-pastoris chloroplast
160	NC_009271	CAAT	3	82815	82825	11	Crucihimalaya wallichii chloroplast
161	NC_009272	CAAT	3	81192	81202	11	Draba nemorosa chloroplast
162	NC_009273	CAAT	3	82754	82764	11	Lepidium virginicum chloroplast
163	NC_009274	CAAT	3	81110	81120	11	Lobularia maritima chloroplast
164	NC_009275	CAAT	3	82994	83004	11	Nasturtium officinale chloroplast
165	NC_009598	CAAT	3	85658	85668	11	Chloranthus spicatus chloroplast
166	NC_009600	CAAT	3	378	389	12	Illicium oligandrum chloroplast
167	NC_009601	CAAT	3	4318	4329	12	Dioscorea elephantipes chloroplast
168	NC_009681	CAAT	3	67410	67420	11	Leptosira terrestris chloroplast
169	NC_009766	CAAT	3	42663	42673	11	Cuscuta reflexa chloroplast
170	NC_009808	CAAT	3	85521	85531	11	Ipomoea purpurea chloroplast
171	NC_010109	CAAT	3	76762	76774	13	Lemna minor chloroplast
172	NC_010359	CAAT	3	100217	100228	12	Aneura mirabilis chloroplast
173	NC_010433	CAAT	3	34069	34081	13	Manihot esculenta chloroplast
174	NC_010433	CAAT	3	88017	88027	11	Manihot esculenta chloroplast
175	NC_010548	CAAT	3	78837	78849	13	Cryptomeria japonica chloroplast
176	NC_010548	CAAT	3	131679	131690	12	Cryptomeria japonica chloroplast
177	NC_010601	CAAT	3	82241	82251	11	Guizotia abyssinica chloroplast
178	NC_011031	CAAT	3	87634	87645	12	Oedogonium cardiacum chloroplast
179	NC_011163	CAAT	3	81274	81284	11	Cicer arietinum chloroplast
180	NC_011163	CAAT	3	109875	109886	12	Cicer arietinum chloroplast
181	NC_011828	CAAT	3	26726	26736	11	Trifolium subterraneum chloroplast
182	NC_012052	CAAT	3	63152	63162	11	Syntrichia ruralis chloroplast
183	NC_012097	CAAT	3	47558	47569	12	Pycnococcus provasolii chloroplast
184	NC_012099	CAAT	3	23453	23463	11	Pyramimonas parkeae chloroplast
185	NC_012615	CAAT	3	86976	86986	11	Megaleranthis saniculifolia chloroplast
186	NC_012818	CAAT	3	137941	137951	11	Alsophila spinulosa chloroplast
187	NC_012898	CAAT	3	52787	52798	12	Aureococcus anophagefferens chloroplast
188	NC_013273	CAAT	3	16658	16670	13	Coix lacryma-jobi chloroplast
189	NC_013553	CAAT	3	83299	83309	11	Parthenium argentatum chloroplast
190	NC_013823	CAAT	3	15318	15330	13	Typha latifolia chloroplast
191	NC_013843	CAAT	3	115514	115524	11	Vigna radiata chloroplast
192	NC_014057	CAAT	3	77304	77314	11	Pisum sativum chloroplast
193	NC_014057	CAAT	3	113042	113052	11	Pisum sativum chloroplast
194	NC_013707	CAAT	3	85208	85218	11	Olea europaea chloroplast

ChloroMitoSSRDB 2.0 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

Chloroplast Motifs - Imperfect CAAT Repeats