ChloroMitoSSRDB 2.0 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

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Chloroplast Motifs - Imperfect AGGT Repeats

S.NoSequence IDMotifIterationsStartEndTract LengthSequence Name
1NC_017006AGGT411336711338216Mankyua chejuensis chloroplast
2NC_011087AGGT315848515849511Paulinella chromatophora chromatophore
3NC_014267AGGT3758477585812Kryptoperidinium foliaceum chloroplast
4NC_014287AGGT3678026781312Durinskia baltica chloroplast
5NC_014348AGGT314749014750112Pteridium aquilinum subsp. aquilinum chloroplast
6NC_014570AGGT311110811111912Eucalyptus grandis chloroplast
7NC_014573AGGT3907309074112Geranium palmatum plastid
8NC_014575AGGT3391853919612Cedrus deodara chloroplast
9NC_014582AGGT310819310820412Monsonia speciosa plastid
10NC_014592AGGT315089415090512Cheilanthes lindheimeri chloroplast
11NC_014674AGGT311199511200612Castanea mollissima chloroplast
12NC_014675AGGT310134510135612Isoetes flaccida chloroplast
13NC_014676AGGT311181711182812Theobroma cacao chloroplast
14NC_014697AGGT310816410817512Prunus persica chloroplast
15NC_014699AGGT3997709978112Equisetum arvense chloroplast
16NC_014807AGGT311044011045112Corynocarpus laevigata chloroplast
17NC_014808AGGT3757407575112Thalassiosira oceanica CCMP1005 chloroplast
18NC_015083AGGT310009010010112Erodium carvifolium chloroplast
19NC_015113AGGT310623010624112Anthriscus cerefolium chloroplast
20NC_015139AGGT310542110543212Brassica rapa subsp. pekinensis chloroplast
21NC_015204AGGT311120011121112Gossypium thurberi chloroplast
22NC_015206AGGT310757110758212Fragaria vesca subsp. vesca chloroplast
23NC_015308AGGT311170211171312Hevea brasiliensis chloroplast
24NC_015401AGGT310820510821612Olea europaea subsp. europaea plastid
25NC_015402AGGT3871598717012Ptilidium pulcherrimum chloroplast
26NC_015403AGGT3370343704512Fistulifera sp. JPCC DA0580 chloroplast
27NC_015543AGGT310414910416012Jacobaea vulgaris chloroplast
28NC_015604AGGT310821310822412Olea europaea subsp. cuspidata chloroplast
29NC_015605AGGT311389111390212Nelumbo lutea chloroplast
30NC_015608AGGT310829710830812Olea woodiana subsp. woodiana chloroplast
31NC_015610AGGT311399011400112Nelumbo nucifera chloroplast
32NC_015621AGGT310560210561312Ageratina adenophora chloroplast
33NC_015623AGGT310822410823512Olea europaea subsp. maroccana chloroplast
34NC_015803AGGT310057410058512Indocalamus longiauritus plastid
35NC_015817AGGT310052010053112Phyllostachys edulis chloroplast
36NC_015820AGGT310057710058812Acidosasa purpurea chloroplast
37NC_015826AGGT310060610061712Phyllostachys nigra var. henonis chloroplast
38NC_015830AGGT310029810030912Bambusa emeiensis chloroplast
39NC_015831AGGT310042910044012Ferrocalamus rimosivaginus plastid
40NC_015891AGGT311351311352412Spirodela polyrhiza chloroplast
41NC_015892AGGT311021711022812Magnolia kwangsiensis chloroplast
42NC_015894AGGT311417011418112Wolffiella lingulata chloroplast
43NC_015899AGGT3341733418311Wolffia australiana chloroplast
44NC_015899AGGT311377611378712Wolffia australiana chloroplast
45NC_015983AGGT310785010786112Cucumis melo subsp. melo chloroplast
46NC_015990AGGT310007210008312Panicum virgatum chloroplast
47NC_015996AGGT311005311006412Pyrus pyrifolia chloroplast
48NC_016058AGGT3594065941712Larix decidua chloroplast
49NC_016064AGGT3914309144112Pseudotsuga sinensis var. wilsoniana chloroplast
50NC_016068AGGT310792510793612Nicotiana undulata chloroplast
51NC_016430AGGT310817110818212Eleutherococcus senticosus chloroplast
52NC_016433AGGT310628210629312Sesamum indicum chloroplast
53NC_016468AGGT310631110632212Boea hygrometrica chloroplast
54NC_016471AGGT3570395705012Neottia nidus-avis plastid
55NC_016668AGGT311114611115712Gossypium raimondii chloroplast
56NC_016670AGGT311133811134912Gossypium darwinii chloroplast
57NC_016677AGGT3982759828612Leersia tisserantii plastid
58NC_016690AGGT311137611138712Gossypium tomentosum chloroplast
59NC_016692AGGT311123411124512Gossypium herbaceum subsp. africanum chloroplast
60NC_016699AGGT310053610054712Phyllostachys propinqua chloroplast
61NC_016708AGGT310535610536712Millettia pinnata chloroplast
62NC_016711AGGT311125911127012Gossypium mustelinum chloroplast
63NC_016712AGGT311116311117412Gossypium arboreum chloroplast
64NC_016718AGGT3984279843812Rhynchoryza subulata plastid
65NC_016727AGGT310323510324612Silene vulgaris chloroplast
66NC_016728AGGT3986239863412Silene noctiflora chloroplast
67NC_016729AGGT3987229873312Silene conica chloroplast
68NC_016730AGGT310368010369112Silene latifolia chloroplast
69NC_016731AGGT3667446675512Synedra acus chloroplast
70NC_016734AGGT310510310511412Brassica napus chloroplast
71NC_016735AGGT3833088331912Fucus vesiculosus chloroplast
72NC_016736AGGT311277811278912Ricinus communis chloroplast
73NC_016753AGGT311219511220612Colocasia esculenta chloroplast
74NC_016921AGGT310722610723712Pentactina rupicola chloroplast
75NC_016927AGGT3969559696612Oryza meridionalis chloroplast
76NC_016986AGGT311299211300312Ginkgo biloba chloroplast
77NC_017602AGGT310792110793212Elaeis guineensis chloroplast
78NC_017609AGGT310883310884412Phalaenopsis equestris chloroplast
79NC_017835AGGT3969439695412Oryza rufipogon chloroplast
80NC_017894AGGT311122511123612Gossypium gossypioides chloroplast
81NC_018051AGGT310384210385312Vigna unguiculata chloroplast
82NC_018109AGGT311028211029312Gossypium incanum chloroplast
83NC_018110AGGT311056411057512Gossypium somalense chloroplast
84NC_018111AGGT311051311052412Gossypium capitis-viridis chloroplast
85NC_018112AGGT311059611060712Gossypium areysianum chloroplast
86NC_018113AGGT311090211091312Gossypium robinsonii chloroplast
87NC_018114AGGT310480110481212Erycina pusilla chloroplast
88NC_018117AGGT310774710775812Datura stramonium chloroplast
89NC_018117AGGT312552512553511Datura stramonium chloroplast
90NC_018357AGGT311035511036612Magnolia denudata chloroplast
91NC_018541AGGT310746810747912Elodea canadensis chloroplast
92NC_018552AGGT310899610900712Capsicum annuum chloroplast
93NC_018565AGGT310629510630612Pachycladon enysii chloroplast
94NC_018766AGGT310762110763212Fragaria vesca subsp. bracteata chloroplast
95NC_018767AGGT310763310764412Fragaria mandshurica plastid
96NC_019601AGGT310752510753612Fragaria chiloensis chloroplast
97NC_019602AGGT310754410755512Fragaria virginiana chloroplast
98NC_019616AGGT311521811522912Vaccinium macrocarpon plastid
99NC_019628AGGT3886058861612Pellia endiviifolia chloroplast
100NC_019648AGGT3968089681912Festuca altissima plastid
101NC_019649AGGT3951229513312Festuca ovina plastid
102NC_019650AGGT3969249693512Festuca pratensis plastid
103NC_019651AGGT3968369684712Lolium multiflorum plastid
104NC_020019AGGT310866610867712Camellia sinensis chloroplast
105NC_020092AGGT310426310427412Chrysanthemum x morifolium chloroplast
106NC_020098AGGT310668710669812Tectona grandis chloroplast
107NC_020146AGGT3988049881512Equisetum hyemale chloroplast
108NC_020147AGGT310559010560112Ophioglossum californicum chloroplast
109NC_020152AGGT311229611230712Quercus rubra plastid
110NC_020316AGGT311046511047612Magnolia officinalis chloroplast
111NC_020317AGGT311041111042212Magnolia officinalis subsp. biloba voucher SC001 chloroplast
112NC_020318AGGT311000311001412Magnolia grandiflora voucher NJ016 chloroplast
113NC_020319AGGT313527813528912Cycas revoluta chloroplast
114NC_020320AGGT310421910423012Chrysanthemum indicum voucher HeN001 chloroplast
115NC_020321AGGT310026310027412Taxus mairei voucher NN014 chloroplast
116NC_020341AGGT3999399995012Arundinaria gigantea chloroplast
117NC_020362AGGT311250611251712Heliconia collinsiana plastid
118NC_020364AGGT310864310865412Pseudophoenix vinifera plastid
119NC_020365AGGT310826410827512Calamus caryotoides plastid
120NC_020366AGGT310929710930812Bismarckia nobilis plastid
121NC_020367AGGT310917310918412Dasypogon bromeliifolius plastid
122NC_020371AGGT31648165912Pavlova lutheri chloroplast
123NC_020431AGGT310424010425112Salvia miltiorrhiza chloroplast
124NC_020607AGGT310423910425012Artemisia frigida chloroplast
125NC_021091AGGT310424410425512Vigna angularis chloroplast DNA
126NC_021101AGGT310837910839012Francoa sonchifolia plastid
127NC_021102AGGT310594810595912Pachycladon cheesemanii chloroplast
128NC_021111AGGT3194091942012Cistanche deserticola chloroplast
129NC_021121AGGT310809210810312Ardisia polysticta chloroplast
130NC_021372AGGT310185710186812Pharus latifolius chloroplast
131NC_021423AGGT310741910743012Catharanthus roseus cultivar Pacifica Punch Halo chloroplast
132NC_021425AGGT311059211060312Tetracentron sinense chloroplast
133NC_021426AGGT311173011174112Trochodendron aralioides chloroplast
134NC_021429AGGT310839210840312Cymbidium aloifolium voucher KUN:YJB100604 chloroplast
135NC_021430AGGT310768710769812Cymbidium sinense voucher KUN:YJB100605 chloroplast
136NC_021431AGGT310773510774612Cymbidium tortisepalum voucher KUN:HJL091027 chloroplast
137NC_021432AGGT310773710774812Cymbidium tracyanum voucher KUN:YJB100606 chloroplast
138NC_021433AGGT310758410759512Cymbidium mannii voucher KUN:YJB100602 chloroplast
139NC_021438AGGT3828898290012Gnetum montanum chloroplast
140NC_021439AGGT3900119002212Pinus massoniana chloroplast
141NC_021440AGGT3907389074912Pinus taeda chloroplast
142NC_021449AGGT310308110309212Utricularia gibba chloroplast
143NC_021455AGGT310735410736512Prinsepia utilis plastid
144NC_021636AGGT310578710579812Glycine tomentella voucher CSIRO:G1403 chloroplast
145NC_021645AGGT310550510551612Glycine cyrtoloba voucher CSIRO:G1267 chloroplast
146NC_021646AGGT310581610582712Glycine stenophita voucher CSIRO:G1974 chloroplast
147NC_021647AGGT310557610558712Glycine canescens voucher CSIRO:G1232 chloroplast
148NC_021648AGGT310583010584112Glycine dolichocarpa voucher CSIRO:G1134 chloroplast
149NC_021649AGGT310605310606412Glycine falcata voucher CSIRO:G1718 chloroplast
150NC_021650AGGT310584110585212Glycine syndetika voucher CSIRO:G1300 chloroplast
151NC_021760AGGT3991019911212Triticum monococcum chloroplast
152NC_021761AGGT3975579756812Secale cereale chloroplast
153NC_021762AGGT3984769848712Triticum urartu chloroplast
154NC_021936AGGT311081611082712Najas flexilis chloroplast
155NC_022133AGGT3968169682712Aegilops tauschii chloroplast
156NC_022135AGGT3962229623312Aegilops speltoides isolate SPE0661 chloroplast
157NC_022136AGGT315147415148512Lygodium japonicum chloroplast
158NC_000932AGGT310634510635612 Arabidopsis thaliana chloroplast
159NC_001319AGGT3875728758312 Marchantia polymorpha chloroplast
160NC_001320AGGT3969459695612 Oryza sativa Japonica Group plastid
161NC_001568AGGT3388043881512 Epifagus virginiana chloroplast
162NC_001631AGGT3900009001112 Pinus thunbergii chloroplast
163NC_001666AGGT310079210080312 Zea mays chloroplast
164NC_001713AGGT35615562612 Odontella sinensis chloroplast
165NC_001879AGGT310798510799612 Nicotiana tabacum plastid
166NC_002186AGGT3879508796112 Mesostigma viride chloroplast
167NC_002202AGGT310330810331912 Spinacia oleracea plastid
168NC_002693AGGT311288211289312 Oenothera elata subsp. hookeri plastid plastome I
169NC_002694AGGT310358210359312 Lotus japonicus chloroplast
170NC_002762AGGT3965569656712 Triticum aestivum chloroplast
171NC_003386AGGT3966669667712 Psilotum nudum chloroplast
172NC_004115AGGT3962289623912 Chaetosphaeridium globosum chloroplast
173NC_004543AGGT311908511909612 Anthoceros formosae chloroplast
174NC_004561AGGT310827410828512 Atropa belladonna chloroplast
175NC_004561AGGT312636212637211 Atropa belladonna chloroplast
176NC_004677AGGT3883998841012 Pinus koraiensis chloroplast
177NC_004766AGGT314557514558612 Adiantum capillus-veneris chloroplast
178NC_004993AGGT310695010696112 Calycanthus floridus var. glaucus chloroplast
179NC_005087AGGT3916179162812 Physcomitrella patens subsp. patens chloroplast
180NC_005878AGGT3219552196612 Saccharum hybrid cultivar SP-80-3280 chloroplast
181NC_005973AGGT3968939690412 Oryza nivara chloroplast
182NC_006050AGGT311202111203212 Nymphaea alba chloroplast
183NC_006084AGGT310151210152312 Saccharum hybrid cultivar NCo 310 chloroplast
184NC_006290AGGT310748310749412 Panax ginseng chloroplast
185NC_006861AGGT311357211358312 Huperzia lucidula chloroplast
186NC_007144AGGT310766010767112 Cucumis sativus chloroplast
187NC_007407AGGT310540310541412 Acorus calamus plastid
188NC_007499AGGT310871010872112 Phalaenopsis aphrodite subsp. formosana chloroplast
189NC_007500AGGT310798310799412 Nicotiana sylvestris chloroplast
190NC_007578AGGT310575610576712 Lactuca sativa chloroplast
191NC_007602AGGT310776410777512 Nicotiana tomentosiformis chloroplast
192NC_007898AGGT310731710732812 Solanum lycopersicum chloroplast
193NC_007932AGGT315196515197612 Porphyra yezoensis chloroplast
194NC_007932AGGT319053819054912 Porphyra yezoensis chloroplast
195NC_007942AGGT310518210519312 Glycine max chloroplast
196NC_007943AGGT310719210720312 Solanum bulbocastanum chloroplast
197NC_007943AGGT312498812499811 Solanum bulbocastanum chloroplast
198NC_007944AGGT311124811125912 Gossypium hirsutum chloroplast
199NC_007957AGGT311135711136812 Vitis vinifera chloroplast
200NC_007977AGGT310462310463412 Helianthus annuus chloroplast
201NC_008096AGGT310714510715612 Solanum tuberosum chloroplast
202NC_008096AGGT312494112495111 Solanum tuberosum chloroplast
203NC_008097AGGT314313614314712 Chara vulgaris chloroplast
204NC_008099AGGT313814013815112 Oltmannsiellopsis viridis chloroplast
205NC_008114AGGT319350019351112 Pseudendoclonium akinetum chloroplast
206NC_008115AGGT311123611124712 Eucalyptus globulus subsp. globulus chloroplast
207NC_008116AGGT31821183212 Staurastrum punctulatum chloroplast
208NC_008117AGGT31980199112 Zygnema circumcarinatum chloroplast
209NC_008155AGGT3968989690912 Oryza sativa Indica Group chloroplast
210NC_008235AGGT310744610745712 Populus alba chloroplast
211NC_008325AGGT310658810659912 Daucus carota chloroplast
212NC_008326AGGT311037411038512 Liriodendron tulipifera chloroplast
213NC_008334AGGT311063411064512 Citrus sinensis chloroplast
214NC_008335AGGT311384011385112 Platanus occidentalis chloroplast
215NC_008336AGGT310761910763012 Nandina domestica chloroplast
216NC_008359AGGT310907010908112 Morus indica chloroplast
217NC_008407AGGT311335011336112 Jasminum nudiflorum chloroplast
218NC_008454AGGT319625619626712 Pelargonium x hortorum chloroplast
219NC_008456AGGT311119511120612 Drimys granadensis chloroplast
220NC_008457AGGT311019611020712 Piper cenocladum chloroplast
221NC_008535AGGT310689410690512 Coffea arabica chloroplast
222NC_008588AGGT3686436865412 Phaeodactylum tricornutum chloroplast
223NC_008589AGGT3704007041112 Thalassiosira pseudonana chloroplast
224NC_008590AGGT3981959820612 Hordeum vulgare subsp. vulgare chloroplast
225NC_008591AGGT3982689827912 Agrostis stolonifera chloroplast
226NC_008602AGGT3835878359812 Sorghum bicolor chloroplast
227NC_008602AGGT310167910169012 Sorghum bicolor chloroplast
228NC_008641AGGT311127211128312 Gossypium barbadense chloroplast
229NC_008788AGGT311276811277912 Nuphar advena chloroplast
230NC_008796AGGT310654410655512 Ranunculus macranthus chloroplast
231NC_008822AGGT39460947213 Chlorokybus atmophyticus chloroplast
232NC_008822AGGT311323611324712 Chlorokybus atmophyticus chloroplast
233NC_008829AGGT310782110783212 Angiopteris evecta chloroplast
234NC_009143AGGT310795210796312 Populus trichocarpa chloroplast
235NC_009259AGGT310273310274412 Phaseolus vulgaris chloroplast
236NC_009265AGGT310582910584012 Aethionema cordifolium chloroplast
237NC_009266AGGT310587410588512 Aethionema grandiflorum chloroplast
238NC_009267AGGT310627410628512 Olimarabidopsis pumila chloroplast
239NC_009268AGGT310514610515712 Arabis hirsuta chloroplast
240NC_009269AGGT310582410583512 Barbarea verna chloroplast
241NC_009270AGGT310610410611512 Capsella bursa-pastoris chloroplast
242NC_009271AGGT310651410652512 Crucihimalaya wallichii chloroplast
243NC_009272AGGT310472810473912 Draba nemorosa chloroplast
244NC_009273AGGT310639010640112 Lepidium virginicum chloroplast
245NC_009274AGGT310460610461712 Lobularia maritima chloroplast
246NC_009275AGGT310667410668512 Nasturtium officinale chloroplast
247NC_009573AGGT3229812299212 Rhodomonas salina chloroplast
248NC_009598AGGT310885610886712 Chloranthus spicatus chloroplast
249NC_009599AGGT311043611044712 Buxus microphylla chloroplast
250NC_009600AGGT310967010968112 Illicium oligandrum chloroplast
251NC_009601AGGT310490710491812 Dioscorea elephantipes chloroplast
252NC_009618AGGT311127911129012 Cycas taitungensis chloroplast
253NC_009765AGGT3625716258212 Cuscuta gronovii chloroplast
254NC_009766AGGT3936149362512 Cuscuta reflexa chloroplast
255NC_009808AGGT310738310739412 Ipomoea purpurea chloroplast
256NC_009949AGGT3615826159312 Cuscuta obtusiflora chloroplast
257NC_009950AGGT3969759698612 Lolium perenne chloroplast
258NC_009962AGGT310837410838512 Ceratophyllum demersum chloroplast
259NC_009963AGGT3968119682212 Cuscuta exaltata chloroplast
260NC_010093AGGT310507810508912 Acorus americanus chloroplast
261NC_010109AGGT311151511152612 Lemna minor chloroplast
262NC_010323AGGT311108911110012 Carica papaya chloroplast
263NC_010358AGGT311215411216512 Oenothera argillicola chloroplast
264NC_010359AGGT3834558346612 Aneura mirabilis chloroplast
265NC_010360AGGT311283911285012 Oenothera glazioviana chloroplast
266NC_010361AGGT311230711231812 Oenothera biennis chloroplast
267NC_010362AGGT311097311098412 Oenothera parviflora chloroplast
268NC_010433AGGT311180311181412 Manihot esculenta chloroplast
269NC_010442AGGT310662710663812 Trachelium caeruleum chloroplast
270NC_010442AGGT312117312118412 Trachelium caeruleum chloroplast
271NC_010601AGGT310504310505412 Guizotia abyssinica chloroplast
272NC_010654AGGT3853468535712 Welwitschia mirabilis chloroplast
273NC_010772AGGT35053506412 Heterosigma akashiwo chloroplast
274NC_010776AGGT310654710655812 Fagopyrum esculentum subsp. ancestrale chloroplast
275NC_011032AGGT3965269653712 Brachypodium distachyon chloroplast
276NC_011152AGGT3903759038612 Picea sitchensis chloroplast
277NC_011153AGGT3900129002312 Pinus contorta chloroplast
278NC_011154AGGT3892518926212 Pinus gerardiana chloroplast
279NC_011155AGGT3890668907712 Pinus krempfii chloroplast
280NC_011156AGGT3885628857312 Pinus lambertiana chloroplast
281NC_011158AGGT3887958880612 Pinus monophylla chloroplast
282NC_011159AGGT3893588936912 Pinus nelsonii chloroplast
283NC_011163AGGT310263210264312 Cicer arietinum chloroplast
284NC_011713AGGT3977709778112 Festuca arundinacea chloroplast
285NC_011930AGGT3107721078312 Keteleeria davidiana chloroplast
286NC_011942AGGT3253542536512 Gnetum parvifolium chloroplast
287NC_011954AGGT3352083521912 Ephedra equisetina chloroplast
288NC_011954AGGT3757977580812 Ephedra equisetina chloroplast
289NC_012052AGGT3908949090512 Syntrichia ruralis chloroplast
290NC_012099AGGT3717697178012 Pyramimonas parkeae chloroplast
291NC_012224AGGT311361811362912 Jatropha curcas chloroplast
292NC_012615AGGT311077311078412 Megaleranthis saniculifolia chloroplast
293NC_012818AGGT315128415129512 Alsophila spinulosa chloroplast
294NC_012927AGGT310018810019912 Bambusa oldhamii chloroplast
295NC_013086AGGT3891598917012 Selaginella moellendorffii plastid
296NC_013088AGGT310027610028712 Dendrocalamus latiflorus chloroplast
297NC_013273AGGT310121510122612 Coix lacryma-jobi chloroplast
298NC_013553AGGT310614710615812 Parthenium argentatum chloroplast
299NC_013823AGGT311198411199512 Typha latifolia chloroplast
300NC_013843AGGT310386610387712 Vigna radiata chloroplast
301NC_013991AGGT310911610912712 Phoenix dactylifera chloroplast
302NC_014056AGGT310493210494312 Oncidium Gower Ramsey chloroplast
303NC_014062AGGT3981849819512 Anomochloa marantoidea chloroplast
304NC_013707AGGT310819110820212 Olea europaea chloroplast