Chloroplast Motifs - Imperfect ATCT Repeats
| S.No | Sequence ID | Motif | Iterations | Start | End | Tract Length | Sequence Name |
| 1 | NC_021372 | ATCT | 6 | 18827 | 18851 | 25 | Pharus latifolius chloroplast |
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| 2 | NC_008829 | ATCT | 6 | 95522 | 95543 | 22 | Angiopteris evecta chloroplast |
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| 3 | NC_014348 | ATCT | 4 | 31631 | 31646 | 16 | Pteridium aquilinum subsp. aquilinum chloroplast |
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| 4 | NC_015139 | ATCT | 4 | 47327 | 47342 | 16 | Brassica rapa subsp. pekinensis chloroplast |
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| 5 | NC_015204 | ATCT | 4 | 44098 | 44113 | 16 | Gossypium thurberi chloroplast |
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| 6 | NC_016668 | ATCT | 4 | 43964 | 43979 | 16 | Gossypium raimondii chloroplast |
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| 7 | NC_016670 | ATCT | 4 | 44208 | 44223 | 16 | Gossypium darwinii chloroplast |
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| 8 | NC_016690 | ATCT | 4 | 44190 | 44205 | 16 | Gossypium tomentosum chloroplast |
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| 9 | NC_016692 | ATCT | 4 | 44087 | 44102 | 16 | Gossypium herbaceum subsp. africanum chloroplast |
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| 10 | NC_016711 | ATCT | 4 | 44140 | 44155 | 16 | Gossypium mustelinum chloroplast |
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| 11 | NC_016712 | ATCT | 4 | 44060 | 44075 | 16 | Gossypium arboreum chloroplast |
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| 12 | NC_017894 | ATCT | 4 | 43983 | 43998 | 16 | Gossypium gossypioides chloroplast |
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| 13 | NC_018109 | ATCT | 4 | 43622 | 43637 | 16 | Gossypium incanum chloroplast |
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| 14 | NC_018110 | ATCT | 4 | 43740 | 43755 | 16 | Gossypium somalense chloroplast |
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| 15 | NC_018112 | ATCT | 4 | 43764 | 43779 | 16 | Gossypium areysianum chloroplast |
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| 16 | NC_018113 | ATCT | 4 | 43817 | 43832 | 16 | Gossypium robinsonii chloroplast |
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| 17 | NC_020092 | ATCT | 4 | 30411 | 30426 | 16 | Chrysanthemum x morifolium chloroplast |
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| 18 | NC_020319 | ATCT | 4 | 77026 | 77041 | 16 | Cycas revoluta chloroplast |
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| 19 | NC_020320 | ATCT | 4 | 30420 | 30435 | 16 | Chrysanthemum indicum voucher HeN001 chloroplast |
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| 20 | NC_020607 | ATCT | 4 | 30421 | 30436 | 16 | Artemisia frigida chloroplast |
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| 21 | NC_007944 | ATCT | 4 | 44123 | 44138 | 16 | Gossypium hirsutum chloroplast |
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| 22 | NC_008335 | ATCT | 4 | 39995 | 40010 | 16 | Platanus occidentalis chloroplast |
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| 23 | NC_008641 | ATCT | 4 | 44174 | 44189 | 16 | Gossypium barbadense chloroplast |
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| 24 | NC_009962 | ATCT | 4 | 6772 | 6787 | 16 | Ceratophyllum demersum chloroplast |
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| 25 | NC_012818 | ATCT | 4 | 33593 | 33608 | 16 | Alsophila spinulosa chloroplast |
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| 26 | NC_011087 | ATCT | 3 | 978872 | 978882 | 11 | Paulinella chromatophora chromatophore |
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| 27 | NC_014267 | ATCT | 3 | 52376 | 52386 | 11 | Kryptoperidinium foliaceum chloroplast |
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| 28 | NC_014575 | ATCT | 3 | 115799 | 115809 | 11 | Cedrus deodara chloroplast |
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| 29 | NC_014582 | ATCT | 3 | 37569 | 37580 | 12 | Monsonia speciosa plastid |
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| 30 | NC_014589 | ATCT | 3 | 24601 | 24612 | 12 | Cathaya argyrophylla chloroplast |
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| 31 | NC_014674 | ATCT | 3 | 9094 | 9104 | 11 | Castanea mollissima chloroplast |
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| 32 | NC_014699 | ATCT | 3 | 64317 | 64327 | 11 | Equisetum arvense chloroplast |
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| 33 | NC_014874 | ATCT | 3 | 14889 | 14900 | 12 | Rhizanthella gardneri plastid |
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| 34 | NC_014874 | ATCT | 3 | 49544 | 49554 | 11 | Rhizanthella gardneri plastid |
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| 35 | NC_015113 | ATCT | 3 | 75447 | 75458 | 12 | Anthriscus cerefolium chloroplast |
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| 36 | NC_015204 | ATCT | 3 | 4719 | 4730 | 12 | Gossypium thurberi chloroplast |
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| 37 | NC_015204 | ATCT | 3 | 37389 | 37400 | 12 | Gossypium thurberi chloroplast |
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| 38 | NC_015308 | ATCT | 3 | 49411 | 49421 | 11 | Hevea brasiliensis chloroplast |
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| 39 | NC_015359 | ATCT | 3 | 112495 | 112506 | 12 | Chlorella variabilis plastid |
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| 40 | NC_015402 | ATCT | 3 | 11518 | 11528 | 11 | Ptilidium pulcherrimum chloroplast |
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| 41 | NC_015403 | ATCT | 3 | 17056 | 17068 | 13 | Fistulifera sp. JPCC DA0580 chloroplast |
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| 42 | NC_015543 | ATCT | 3 | 66115 | 66126 | 12 | Jacobaea vulgaris chloroplast |
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| 43 | NC_015605 | ATCT | 3 | 85496 | 85506 | 11 | Nelumbo lutea chloroplast |
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| 44 | NC_015610 | ATCT | 3 | 85574 | 85584 | 11 | Nelumbo nucifera chloroplast |
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| 45 | NC_015621 | ATCT | 3 | 67113 | 67124 | 12 | Ageratina adenophora chloroplast |
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| 46 | NC_015891 | ATCT | 3 | 40257 | 40269 | 13 | Spirodela polyrhiza chloroplast |
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| 47 | NC_015892 | ATCT | 3 | 10683 | 10694 | 12 | Magnolia kwangsiensis chloroplast |
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| 48 | NC_016058 | ATCT | 3 | 81939 | 81950 | 12 | Larix decidua chloroplast |
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| 49 | NC_016668 | ATCT | 3 | 4648 | 4659 | 12 | Gossypium raimondii chloroplast |
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| 50 | NC_016668 | ATCT | 3 | 37303 | 37314 | 12 | Gossypium raimondii chloroplast |
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| 51 | NC_016670 | ATCT | 3 | 4727 | 4738 | 12 | Gossypium darwinii chloroplast |
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| 52 | NC_016670 | ATCT | 3 | 37449 | 37460 | 12 | Gossypium darwinii chloroplast |
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| 53 | NC_016690 | ATCT | 3 | 4720 | 4731 | 12 | Gossypium tomentosum chloroplast |
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| 54 | NC_016690 | ATCT | 3 | 37412 | 37423 | 12 | Gossypium tomentosum chloroplast |
|---|
| 55 | NC_016692 | ATCT | 3 | 4706 | 4717 | 12 | Gossypium herbaceum subsp. africanum chloroplast |
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| 56 | NC_016692 | ATCT | 3 | 37377 | 37388 | 12 | Gossypium herbaceum subsp. africanum chloroplast |
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| 57 | NC_016708 | ATCT | 3 | 143257 | 143269 | 13 | Millettia pinnata chloroplast |
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| 58 | NC_016711 | ATCT | 3 | 4706 | 4717 | 12 | Gossypium mustelinum chloroplast |
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| 59 | NC_016711 | ATCT | 3 | 37404 | 37415 | 12 | Gossypium mustelinum chloroplast |
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| 60 | NC_016712 | ATCT | 3 | 4706 | 4717 | 12 | Gossypium arboreum chloroplast |
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| 61 | NC_016712 | ATCT | 3 | 37351 | 37362 | 12 | Gossypium arboreum chloroplast |
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| 62 | NC_016727 | ATCT | 3 | 121870 | 121881 | 12 | Silene vulgaris chloroplast |
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| 63 | NC_016728 | ATCT | 3 | 122774 | 122785 | 12 | Silene noctiflora chloroplast |
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| 64 | NC_016729 | ATCT | 3 | 72696 | 72707 | 12 | Silene conica chloroplast |
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| 65 | NC_016729 | ATCT | 3 | 120473 | 120484 | 12 | Silene conica chloroplast |
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| 66 | NC_016730 | ATCT | 3 | 122013 | 122024 | 12 | Silene latifolia chloroplast |
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| 67 | NC_016736 | ATCT | 3 | 1867 | 1879 | 13 | Ricinus communis chloroplast |
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| 68 | NC_016986 | ATCT | 3 | 31010 | 31020 | 11 | Ginkgo biloba chloroplast |
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| 69 | NC_016986 | ATCT | 3 | 152249 | 152260 | 12 | Ginkgo biloba chloroplast |
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| 70 | NC_017006 | ATCT | 3 | 105409 | 105420 | 12 | Mankyua chejuensis chloroplast |
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| 71 | NC_017602 | ATCT | 3 | 4451 | 4462 | 12 | Elaeis guineensis chloroplast |
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| 72 | NC_017602 | ATCT | 3 | 6087 | 6098 | 12 | Elaeis guineensis chloroplast |
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| 73 | NC_017609 | ATCT | 3 | 75615 | 75625 | 11 | Phalaenopsis equestris chloroplast |
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| 74 | NC_017894 | ATCT | 3 | 4663 | 4674 | 12 | Gossypium gossypioides chloroplast |
|---|
| 75 | NC_017894 | ATCT | 3 | 37320 | 37331 | 12 | Gossypium gossypioides chloroplast |
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| 76 | NC_018109 | ATCT | 3 | 4671 | 4682 | 12 | Gossypium incanum chloroplast |
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| 77 | NC_018109 | ATCT | 3 | 37036 | 37047 | 12 | Gossypium incanum chloroplast |
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| 78 | NC_018110 | ATCT | 3 | 4679 | 4690 | 12 | Gossypium somalense chloroplast |
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| 79 | NC_018110 | ATCT | 3 | 37157 | 37168 | 12 | Gossypium somalense chloroplast |
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| 80 | NC_018111 | ATCT | 3 | 4732 | 4743 | 12 | Gossypium capitis-viridis chloroplast |
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| 81 | NC_018111 | ATCT | 3 | 36969 | 36980 | 12 | Gossypium capitis-viridis chloroplast |
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| 82 | NC_018112 | ATCT | 3 | 4679 | 4690 | 12 | Gossypium areysianum chloroplast |
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| 83 | NC_018112 | ATCT | 3 | 37168 | 37179 | 12 | Gossypium areysianum chloroplast |
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| 84 | NC_018113 | ATCT | 3 | 4827 | 4838 | 12 | Gossypium robinsonii chloroplast |
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| 85 | NC_018113 | ATCT | 3 | 37172 | 37183 | 12 | Gossypium robinsonii chloroplast |
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| 86 | NC_018357 | ATCT | 3 | 10704 | 10715 | 12 | Magnolia denudata chloroplast |
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| 87 | NC_018565 | ATCT | 3 | 82229 | 82241 | 13 | Pachycladon enysii chloroplast |
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| 88 | NC_019628 | ATCT | 3 | 11691 | 11701 | 11 | Pellia endiviifolia chloroplast |
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| 89 | NC_020147 | ATCT | 3 | 98354 | 98365 | 12 | Ophioglossum californicum chloroplast |
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| 90 | NC_020152 | ATCT | 3 | 9101 | 9111 | 11 | Quercus rubra plastid |
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| 91 | NC_020316 | ATCT | 3 | 10761 | 10772 | 12 | Magnolia officinalis chloroplast |
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| 92 | NC_020317 | ATCT | 3 | 10761 | 10772 | 12 | Magnolia officinalis subsp. biloba voucher SC001 chloroplast |
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| 93 | NC_020318 | ATCT | 3 | 10703 | 10714 | 12 | Magnolia grandiflora voucher NJ016 chloroplast |
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| 94 | NC_020319 | ATCT | 3 | 24418 | 24429 | 12 | Cycas revoluta chloroplast |
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| 95 | NC_020319 | ATCT | 3 | 153472 | 153483 | 12 | Cycas revoluta chloroplast |
|---|
| 96 | NC_020361 | ATCT | 3 | 63504 | 63514 | 11 | Podocarpus totara chloroplast |
|---|
| 97 | NC_020364 | ATCT | 3 | 4468 | 4479 | 12 | Pseudophoenix vinifera plastid |
|---|
| 98 | NC_020365 | ATCT | 3 | 4401 | 4412 | 12 | Calamus caryotoides plastid |
|---|
| 99 | NC_020366 | ATCT | 3 | 4686 | 4697 | 12 | Bismarckia nobilis plastid |
|---|
| 100 | NC_020438 | ATCT | 3 | 82097 | 82107 | 11 | Gonium pectorale chloroplast |
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| 101 | NC_021075 | ATCT | 3 | 116288 | 116298 | 11 | Calliarthron tuberculosum chloroplast |
|---|
| 102 | NC_021091 | ATCT | 3 | 46602 | 46614 | 13 | Vigna angularis chloroplast DNA |
|---|
| 103 | NC_021091 | ATCT | 3 | 64112 | 64122 | 11 | Vigna angularis chloroplast DNA |
|---|
| 104 | NC_021102 | ATCT | 3 | 81853 | 81865 | 13 | Pachycladon cheesemanii chloroplast |
|---|
| 105 | NC_021109 | ATCT | 3 | 54741 | 54751 | 11 | Pleodorina starrii plastid |
|---|
| 106 | NC_021425 | ATCT | 3 | 10416 | 10427 | 12 | Tetracentron sinense chloroplast |
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| 107 | NC_021426 | ATCT | 3 | 11302 | 11313 | 12 | Trochodendron aralioides chloroplast |
|---|
| 108 | NC_021429 | ATCT | 3 | 27212 | 27223 | 12 | Cymbidium aloifolium voucher KUN:YJB100604 chloroplast |
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| 109 | NC_021437 | ATCT | 3 | 5075 | 5086 | 12 | Cunninghamia lanceolata chloroplast |
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| 110 | NC_021437 | ATCT | 3 | 5096 | 5107 | 12 | Cunninghamia lanceolata chloroplast |
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| 111 | NC_021437 | ATCT | 3 | 67952 | 67963 | 12 | Cunninghamia lanceolata chloroplast |
|---|
| 112 | NC_021437 | ATCT | 3 | 120053 | 120063 | 11 | Cunninghamia lanceolata chloroplast |
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| 113 | NC_021449 | ATCT | 3 | 53273 | 53285 | 13 | Utricularia gibba chloroplast |
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| 114 | NC_021936 | ATCT | 3 | 79056 | 79067 | 12 | Najas flexilis chloroplast |
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| 115 | NC_000925 | ATCT | 3 | 62991 | 63002 | 12 | Porphyra purpurea chloroplast |
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| 116 | NC_001568 | ATCT | 3 | 60530 | 60542 | 13 | Epifagus virginiana chloroplast |
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| 117 | NC_001675 | ATCT | 3 | 94642 | 94653 | 12 | Cyanophora paradoxa cyanelle |
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| 118 | NC_001840 | ATCT | 3 | 113163 | 113174 | 12 | Cyanidium caldarium chloroplast |
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| 119 | NC_002652 | ATCT | 3 | 30145 | 30156 | 12 | Euglena longa plastid |
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| 120 | NC_002652 | ATCT | 3 | 62562 | 62573 | 12 | Euglena longa plastid |
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| 121 | NC_002652 | ATCT | 3 | 64045 | 64056 | 12 | Euglena longa plastid |
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| 122 | NC_003386 | ATCT | 3 | 34660 | 34670 | 11 | Psilotum nudum chloroplast |
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| 123 | NC_004115 | ATCT | 3 | 11441 | 11451 | 11 | Chaetosphaeridium globosum chloroplast |
|---|
| 124 | NC_004766 | ATCT | 3 | 30331 | 30342 | 12 | Adiantum capillus-veneris chloroplast |
|---|
| 125 | NC_005086 | ATCT | 3 | 12399 | 12410 | 12 | Amborella trichopoda chloroplast |
|---|
| 126 | NC_005086 | ATCT | 3 | 125082 | 125092 | 11 | Amborella trichopoda chloroplast |
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| 127 | NC_005087 | ATCT | 3 | 122785 | 122795 | 11 | Physcomitrella patens subsp. patens chloroplast |
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| 128 | NC_006137 | ATCT | 3 | 143237 | 143247 | 11 | Gracilaria tenuistipitata var. liui chloroplast |
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| 129 | NC_006861 | ATCT | 3 | 17788 | 17798 | 11 | Huperzia lucidula chloroplast |
|---|
| 130 | NC_007499 | ATCT | 3 | 36889 | 36900 | 12 | Phalaenopsis aphrodite subsp. formosana chloroplast |
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| 131 | NC_007499 | ATCT | 3 | 75603 | 75613 | 11 | Phalaenopsis aphrodite subsp. formosana chloroplast |
|---|
| 132 | NC_007578 | ATCT | 3 | 67366 | 67377 | 12 | Lactuca sativa chloroplast |
|---|
| 133 | NC_007932 | ATCT | 3 | 63135 | 63146 | 12 | Porphyra yezoensis chloroplast |
|---|
| 134 | NC_007944 | ATCT | 3 | 4720 | 4731 | 12 | Gossypium hirsutum chloroplast |
|---|
| 135 | NC_007944 | ATCT | 3 | 37478 | 37489 | 12 | Gossypium hirsutum chloroplast |
|---|
| 136 | NC_007977 | ATCT | 3 | 8271 | 8281 | 11 | Helianthus annuus chloroplast |
|---|
| 137 | NC_007977 | ATCT | 3 | 64482 | 64493 | 12 | Helianthus annuus chloroplast |
|---|
| 138 | NC_007977 | ATCT | 3 | 66850 | 66861 | 12 | Helianthus annuus chloroplast |
|---|
| 139 | NC_008325 | ATCT | 3 | 74877 | 74888 | 12 | Daucus carota chloroplast |
|---|
| 140 | NC_008326 | ATCT | 3 | 10778 | 10789 | 12 | Liriodendron tulipifera chloroplast |
|---|
| 141 | NC_008335 | ATCT | 3 | 11270 | 11281 | 12 | Platanus occidentalis chloroplast |
|---|
| 142 | NC_008336 | ATCT | 3 | 48397 | 48408 | 12 | Nandina domestica chloroplast |
|---|
| 143 | NC_008407 | ATCT | 3 | 44560 | 44570 | 11 | Jasminum nudiflorum chloroplast |
|---|
| 144 | NC_008456 | ATCT | 3 | 28396 | 28407 | 12 | Drimys granadensis chloroplast |
|---|
| 145 | NC_008591 | ATCT | 3 | 101147 | 101157 | 11 | Agrostis stolonifera chloroplast |
|---|
| 146 | NC_008641 | ATCT | 3 | 4731 | 4742 | 12 | Gossypium barbadense chloroplast |
|---|
| 147 | NC_008641 | ATCT | 3 | 37414 | 37425 | 12 | Gossypium barbadense chloroplast |
|---|
| 148 | NC_008788 | ATCT | 3 | 4428 | 4439 | 12 | Nuphar advena chloroplast |
|---|
| 149 | NC_008829 | ATCT | 3 | 15564 | 15574 | 11 | Angiopteris evecta chloroplast |
|---|
| 150 | NC_008829 | ATCT | 3 | 95493 | 95503 | 11 | Angiopteris evecta chloroplast |
|---|
| 151 | NC_009259 | ATCT | 3 | 49028 | 49039 | 12 | Phaseolus vulgaris chloroplast |
|---|
| 152 | NC_009267 | ATCT | 3 | 82194 | 82206 | 13 | Olimarabidopsis pumila chloroplast |
|---|
| 153 | NC_009271 | ATCT | 3 | 82384 | 82396 | 13 | Crucihimalaya wallichii chloroplast |
|---|
| 154 | NC_009599 | ATCT | 3 | 10489 | 10500 | 12 | Buxus microphylla chloroplast |
|---|
| 155 | NC_009600 | ATCT | 3 | 85713 | 85724 | 12 | Illicium oligandrum chloroplast |
|---|
| 156 | NC_009618 | ATCT | 3 | 3483 | 3493 | 11 | Cycas taitungensis chloroplast |
|---|
| 157 | NC_009618 | ATCT | 3 | 162576 | 162587 | 12 | Cycas taitungensis chloroplast |
|---|
| 158 | NC_009766 | ATCT | 3 | 115668 | 115679 | 12 | Cuscuta reflexa chloroplast |
|---|
| 159 | NC_009808 | ATCT | 3 | 151602 | 151613 | 12 | Ipomoea purpurea chloroplast |
|---|
| 160 | NC_009962 | ATCT | 3 | 9934 | 9945 | 12 | Ceratophyllum demersum chloroplast |
|---|
| 161 | NC_010433 | ATCT | 3 | 48713 | 48723 | 11 | Manihot esculenta chloroplast |
|---|
| 162 | NC_010548 | ATCT | 3 | 18261 | 18271 | 11 | Cryptomeria japonica chloroplast |
|---|
| 163 | NC_010548 | ATCT | 3 | 88708 | 88719 | 12 | Cryptomeria japonica chloroplast |
|---|
| 164 | NC_010601 | ATCT | 3 | 58896 | 58908 | 13 | Guizotia abyssinica chloroplast |
|---|
| 165 | NC_010601 | ATCT | 3 | 66878 | 66889 | 12 | Guizotia abyssinica chloroplast |
|---|
| 166 | NC_011153 | ATCT | 3 | 37024 | 37035 | 12 | Pinus contorta chloroplast |
|---|
| 167 | NC_011163 | ATCT | 3 | 24445 | 24456 | 12 | Cicer arietinum chloroplast |
|---|
| 168 | NC_011828 | ATCT | 3 | 16259 | 16271 | 13 | Trifolium subterraneum chloroplast |
|---|
| 169 | NC_012052 | ATCT | 3 | 63603 | 63613 | 11 | Syntrichia ruralis chloroplast |
|---|
| 170 | NC_012224 | ATCT | 3 | 1715 | 1727 | 13 | Jatropha curcas chloroplast |
|---|
| 171 | NC_012224 | ATCT | 3 | 84409 | 84420 | 12 | Jatropha curcas chloroplast |
|---|
| 172 | NC_012615 | ATCT | 3 | 3494 | 3505 | 12 | Megaleranthis saniculifolia chloroplast |
|---|
| 173 | NC_012818 | ATCT | 3 | 81815 | 81826 | 12 | Alsophila spinulosa chloroplast |
|---|
| 174 | NC_013498 | ATCT | 3 | 73266 | 73276 | 11 | Ectocarpus siliculosus chloroplast |
|---|
| 175 | NC_013553 | ATCT | 3 | 65407 | 65418 | 12 | Parthenium argentatum chloroplast |
|---|
| 176 | NC_013553 | ATCT | 3 | 67800 | 67811 | 12 | Parthenium argentatum chloroplast |
|---|
| 177 | NC_013843 | ATCT | 3 | 46575 | 46587 | 13 | Vigna radiata chloroplast |
|---|
| 178 | NC_014063 | ATCT | 3 | 120322 | 120332 | 11 | Lathyrus sativus chloroplast |
|---|