ChloroMitoSSRDB 2.0 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

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Chloroplast Motifs - Imperfect CTTA Repeats

S.NoSequence IDMotifIterationsStartEndTract LengthSequence Name
1NC_017602CTTA6581445816724Elaeis guineensis chloroplast
2NC_020364CTTA4581265814116Pseudophoenix vinifera plastid
3NC_020365CTTA4576605767516Calamus caryotoides plastid
4NC_020366CTTA4587865880116Bismarckia nobilis plastid
5NC_008454CTTA4340083402215 Pelargonium x hortorum chloroplast
6NC_012818CTTA4987099872416 Alsophila spinulosa chloroplast
7NC_013991CTTA4585315854616 Phoenix dactylifera chloroplast
8NC_011087CTTA384321584322511Paulinella chromatophora chromatophore
9NC_011087CTTA385273385274412Paulinella chromatophora chromatophore
10NC_014569CTTA310258310259311Erodium texanum plastid
11NC_014570CTTA313677213678211Eucalyptus grandis chloroplast
12NC_014573CTTA314884214885211Geranium palmatum plastid
13NC_014674CTTA313810713811711Castanea mollissima chloroplast
14NC_014676CTTA313700613701611Theobroma cacao chloroplast
15NC_014697CTTA313429313430311Prunus persica chloroplast
16NC_014807CTTA313649513650511Corynocarpus laevigata chloroplast
17NC_014874CTTA3418574186711Rhizanthella gardneri plastid
18NC_015113CTTA313213413214411Anthriscus cerefolium chloroplast
19NC_015139CTTA313021313022311Brassica rapa subsp. pekinensis chloroplast
20NC_015204CTTA313667213668211Gossypium thurberi chloroplast
21NC_015206CTTA313259713260711Fragaria vesca subsp. vesca chloroplast
22NC_015308CTTA313756913757911Hevea brasiliensis chloroplast
23NC_015401CTTA313314513315511Olea europaea subsp. europaea plastid
24NC_015543CTTA312826412827411Jacobaea vulgaris chloroplast
25NC_015604CTTA313313213314211Olea europaea subsp. cuspidata chloroplast
26NC_015605CTTA313994613995611Nelumbo lutea chloroplast
27NC_015608CTTA313322713323711Olea woodiana subsp. woodiana chloroplast
28NC_015610CTTA314003514004511Nelumbo nucifera chloroplast
29NC_015621CTTA312876812877811Ageratina adenophora chloroplast
30NC_015623CTTA313316613317611Olea europaea subsp. maroccana chloroplast
31NC_015803CTTA312123812124811Indocalamus longiauritus plastid
32NC_015817CTTA312124312125311Phyllostachys edulis chloroplast
33NC_015820CTTA312126412127411Acidosasa purpurea chloroplast
34NC_015826CTTA312133812134811Phyllostachys nigra var. henonis chloroplast
35NC_015830CTTA312105412106411Bambusa emeiensis chloroplast
36NC_015831CTTA312100012101011Ferrocalamus rimosivaginus plastid
37NC_015891CTTA314536814537811Spirodela polyrhiza chloroplast
38NC_015892CTTA313635113636111Magnolia kwangsiensis chloroplast
39NC_015894CTTA314605314606311Wolffiella lingulata chloroplast
40NC_015899CTTA314525314526311Wolffia australiana chloroplast
41NC_015983CTTA313337213338211Cucumis melo subsp. melo chloroplast
42NC_015990CTTA312007712008711Panicum virgatum chloroplast
43NC_015996CTTA313644313645311Pyrus pyrifolia chloroplast
44NC_016068CTTA313344213345211Nicotiana undulata chloroplast
45NC_016430CTTA313422313423311Eleutherococcus senticosus chloroplast
46NC_016433CTTA313108313109311Sesamum indicum chloroplast
47NC_016468CTTA313074613075611Boea hygrometrica chloroplast
48NC_016471CTTA3703137032311Neottia nidus-avis plastid
49NC_016668CTTA313654013655011Gossypium raimondii chloroplast
50NC_016670CTTA313679513680511Gossypium darwinii chloroplast
51NC_016677CTTA35409542113Leersia tisserantii plastid
52NC_016677CTTA311901311902311Leersia tisserantii plastid
53NC_016690CTTA313683813684811Gossypium tomentosum chloroplast
54NC_016692CTTA313672013673011Gossypium herbaceum subsp. africanum chloroplast
55NC_016699CTTA312126612127611Phyllostachys propinqua chloroplast
56NC_016708CTTA3301173012711Millettia pinnata chloroplast
57NC_016708CTTA312988312989311Millettia pinnata chloroplast
58NC_016711CTTA313671913672911Gossypium mustelinum chloroplast
59NC_016712CTTA313663813664811Gossypium arboreum chloroplast
60NC_016718CTTA311877611878611Rhynchoryza subulata plastid
61NC_016727CTTA312947712948711Silene vulgaris chloroplast
62NC_016728CTTA313136413137411Silene noctiflora chloroplast
63NC_016729CTTA312748612749611Silene conica chloroplast
64NC_016730CTTA312963112964111Silene latifolia chloroplast
65NC_016732CTTA325358125359111Dunaliella salina chloroplast
66NC_016734CTTA312971712972711Brassica napus chloroplast
67NC_016736CTTA313890513891511Ricinus communis chloroplast
68NC_016753CTTA313877013878011Colocasia esculenta chloroplast
69NC_016921CTTA313322713323711Pentactina rupicola chloroplast
70NC_016927CTTA35376538813Oryza meridionalis chloroplast
71NC_016927CTTA311707911708911Oryza meridionalis chloroplast
72NC_017602CTTA3694496946113Elaeis guineensis chloroplast
73NC_017602CTTA3944909450011Elaeis guineensis chloroplast
74NC_017602CTTA313311513312511Elaeis guineensis chloroplast
75NC_017609CTTA312496412497411Phalaenopsis equestris chloroplast
76NC_017835CTTA35376538813Oryza rufipogon chloroplast
77NC_017835CTTA311706711707711Oryza rufipogon chloroplast
78NC_017894CTTA313640813641811Gossypium gossypioides chloroplast
79NC_018109CTTA313567313568311Gossypium incanum chloroplast
80NC_018110CTTA313599613600611Gossypium somalense chloroplast
81NC_018111CTTA313589013590011Gossypium capitis-viridis chloroplast
82NC_018112CTTA313602913603911Gossypium areysianum chloroplast
83NC_018113CTTA313630413631411Gossypium robinsonii chloroplast
84NC_018114CTTA312096712097711Erycina pusilla chloroplast
85NC_018117CTTA313329213330211Datura stramonium chloroplast
86NC_018357CTTA313667013668011Magnolia denudata chloroplast
87NC_018541CTTA313405513406511Elodea canadensis chloroplast
88NC_018552CTTA313401713402711Capsicum annuum chloroplast
89NC_018565CTTA313140913141911Pachycladon enysii chloroplast
90NC_019601CTTA313251613252611Fragaria chiloensis chloroplast
91NC_019602CTTA313253413254411Fragaria virginiana chloroplast
92NC_019616CTTA316424416425411Vaccinium macrocarpon plastid
93NC_019648CTTA311716311717311Festuca altissima plastid
94NC_019649CTTA311524311525311Festuca ovina plastid
95NC_019650CTTA311717211718211Festuca pratensis plastid
96NC_019651CTTA311705811706811Lolium multiflorum plastid
97NC_020019CTTA313395113396111Camellia sinensis chloroplast
98NC_020092CTTA312842112843111Chrysanthemum x morifolium chloroplast
99NC_020098CTTA313145513146511Tectona grandis chloroplast
100NC_020152CTTA313842013843011Quercus rubra plastid
101NC_020316CTTA313679913680911Magnolia officinalis chloroplast
102NC_020317CTTA313675113676111Magnolia officinalis subsp. biloba voucher SC001 chloroplast
103NC_020318CTTA313624813625811Magnolia grandiflora voucher NJ016 chloroplast
104NC_020320CTTA312834712835711Chrysanthemum indicum voucher HeN001 chloroplast
105NC_020341CTTA312049912050911Arundinaria gigantea chloroplast
106NC_020364CTTA3702157022713Pseudophoenix vinifera plastid
107NC_020364CTTA3950239503311Pseudophoenix vinifera plastid
108NC_020364CTTA313379313380311Pseudophoenix vinifera plastid
109NC_020365CTTA3948629487211Calamus caryotoides plastid
110NC_020365CTTA313340213341211Calamus caryotoides plastid
111NC_020366CTTA3957129572211Bismarckia nobilis plastid
112NC_020366CTTA313430313431311Bismarckia nobilis plastid
113NC_020367CTTA313384613385611Dasypogon bromeliifolius plastid
114NC_020431CTTA311289011290011Salvia miltiorrhiza chloroplast
115NC_020431CTTA312865412866411Salvia miltiorrhiza chloroplast
116NC_020607CTTA312844812845811Artemisia frigida chloroplast
117NC_021075CTTA3263492636012Calliarthron tuberculosum chloroplast
118NC_021101CTTA313378013379011Francoa sonchifolia plastid
119NC_021102CTTA313096813097811Pachycladon cheesemanii chloroplast
120NC_021111CTTA3329843299411Cistanche deserticola chloroplast
121NC_021121CTTA313336313337311Ardisia polysticta chloroplast
122NC_021372CTTA3303053031511Pharus latifolius chloroplast
123NC_021372CTTA312243012244011Pharus latifolius chloroplast
124NC_021423CTTA313216713217711Catharanthus roseus cultivar Pacifica Punch Halo chloroplast
125NC_021425CTTA313721213722211Tetracentron sinense chloroplast
126NC_021426CTTA313855113856111Trochodendron aralioides chloroplast
127NC_021429CTTA313301713302711Cymbidium aloifolium voucher KUN:YJB100604 chloroplast
128NC_021430CTTA313165213166211Cymbidium sinense voucher KUN:YJB100605 chloroplast
129NC_021431CTTA313173913174911Cymbidium tortisepalum voucher KUN:HJL091027 chloroplast
130NC_021432CTTA313238813239811Cymbidium tracyanum voucher KUN:YJB100606 chloroplast
131NC_021433CTTA313180713181711Cymbidium mannii voucher KUN:YJB100602 chloroplast
132NC_021449CTTA312972112973111Utricularia gibba chloroplast
133NC_021455CTTA313277913278911Prinsepia utilis plastid
134NC_021936CTTA3518055181612Najas flexilis chloroplast
135NC_021936CTTA313311113312111Najas flexilis chloroplast
136NC_022099CTTA3209232093311Medicago truncatula cultivar Jemalong 2HA plastid
137NC_022100CTTA3209282093811Medicago truncatula cultivar Borung plastid
138NC_000932CTTA313117413118411 Arabidopsis thaliana chloroplast
139NC_001320CTTA35374538613 Oryza sativa Japonica Group plastid
140NC_001320CTTA311704611705611 Oryza sativa Japonica Group plastid
141NC_001568CTTA3499074991711 Epifagus virginiana chloroplast
142NC_001568CTTA3526935270311 Epifagus virginiana chloroplast
143NC_001666CTTA312081612082611 Zea mays chloroplast
144NC_001865CTTA3938839389412 Chlorella vulgaris chloroplast
145NC_001879CTTA313351513352511 Nicotiana tabacum plastid
146NC_002186CTTA311027511028612 Mesostigma viride chloroplast
147NC_002202CTTA312900712901711 Spinacia oleracea plastid
148NC_002693CTTA314105914106911 Oenothera elata subsp. hookeri plastid plastome I
149NC_002694CTTA312774412775411 Lotus japonicus chloroplast
150NC_002762CTTA35445545713 Triticum aestivum chloroplast
151NC_002762CTTA311720811721811 Triticum aestivum chloroplast
152NC_003119CTTA3209232093311 Medicago truncatula chloroplast
153NC_004561CTTA313415113416111 Atropa belladonna chloroplast
154NC_004799CTTA3583555836511 Cyanidioschyzon merolae strain 10D chloroplast
155NC_004993CTTA313220213221211 Calycanthus floridus var. glaucus chloroplast
156NC_005086CTTA313931713932711 Amborella trichopoda chloroplast
157NC_005353CTTA3446394465113 Chlamydomonas reinhardtii chloroplast
158NC_005878CTTA3420324204211 Saccharum hybrid cultivar SP-80-3280 chloroplast
159NC_005973CTTA35380539213 Oryza nivara chloroplast
160NC_005973CTTA311701611702611 Oryza nivara chloroplast
161NC_006050CTTA313679413680411 Nymphaea alba chloroplast
162NC_006084CTTA312158912159911 Saccharum hybrid cultivar NCo 310 chloroplast
163NC_006290CTTA313380213381211 Panax ginseng chloroplast
164NC_006861CTTA310376110377212 Huperzia lucidula chloroplast
165NC_007144CTTA313311613312611 Cucumis sativus chloroplast
166NC_007407CTTA313143713144711 Acorus calamus plastid
167NC_007499CTTA312508212509211 Phalaenopsis aphrodite subsp. formosana chloroplast
168NC_007500CTTA313351313352311 Nicotiana sylvestris chloroplast
169NC_007578CTTA312998312999311 Lactuca sativa chloroplast
170NC_007602CTTA313324413325411 Nicotiana tomentosiformis chloroplast
171NC_007898CTTA313289713290711 Solanum lycopersicum chloroplast
172NC_007943CTTA313280613281611 Solanum bulbocastanum chloroplast
173NC_007944CTTA313671913672911 Gossypium hirsutum chloroplast
174NC_007957CTTA313757313758311 Vitis vinifera chloroplast
175NC_007977CTTA312888112889111 Helianthus annuus chloroplast
176NC_008096CTTA313275913276911 Solanum tuberosum chloroplast
177NC_008115CTTA313691413692411 Eucalyptus globulus subsp. globulus chloroplast
178NC_008116CTTA3730537306412 Staurastrum punctulatum chloroplast
179NC_008155CTTA35382539413 Oryza sativa Indica Group chloroplast
180NC_008155CTTA311702211703211 Oryza sativa Indica Group chloroplast
181NC_008235CTTA313254813255811 Populus alba chloroplast
182NC_008325CTTA313243613244611 Daucus carota chloroplast
183NC_008326CTTA313653313654311 Liriodendron tulipifera chloroplast
184NC_008334CTTA3661906620011 Citrus sinensis chloroplast
185NC_008334CTTA313611013612011 Citrus sinensis chloroplast
186NC_008335CTTA313897213898211 Platanus occidentalis chloroplast
187NC_008336CTTA313332413333411 Nandina domestica chloroplast
188NC_008359CTTA313567113568111 Morus indica chloroplast
189NC_008407CTTA314351614352611 Jasminum nudiflorum chloroplast
190NC_008454CTTA3802718028111 Pelargonium x hortorum chloroplast
191NC_008456CTTA313696413697411 Drimys granadensis chloroplast
192NC_008457CTTA313696513697511 Piper cenocladum chloroplast
193NC_008535CTTA313233113234111 Coffea arabica chloroplast
194NC_008590CTTA311880911881911 Hordeum vulgare subsp. vulgare chloroplast
195NC_008591CTTA311879811880811 Agrostis stolonifera chloroplast
196NC_008602CTTA312167912168911 Sorghum bicolor chloroplast
197NC_008641CTTA313675713676711 Gossypium barbadense chloroplast
198NC_008788CTTA313734813735811 Nuphar advena chloroplast
199NC_008796CTTA313209413210411 Ranunculus macranthus chloroplast
200NC_009143CTTA313308113309111 Populus trichocarpa chloroplast
201NC_009265CTTA313062613063611 Aethionema cordifolium chloroplast
202NC_009266CTTA313072813073811 Aethionema grandiflorum chloroplast
203NC_009267CTTA313121713122711 Olimarabidopsis pumila chloroplast
204NC_009268CTTA313023313024311 Arabis hirsuta chloroplast
205NC_009269CTTA313101413102411 Barbarea verna chloroplast
206NC_009270CTTA313099813100811 Capsella bursa-pastoris chloroplast
207NC_009271CTTA313165313166311 Crucihimalaya wallichii chloroplast
208NC_009272CTTA312990512991511 Draba nemorosa chloroplast
209NC_009273CTTA313125913126911 Lepidium virginicum chloroplast
210NC_009274CTTA312932312933311 Lobularia maritima chloroplast
211NC_009275CTTA313157713158711 Nasturtium officinale chloroplast
212NC_009598CTTA39555956511 Chloranthus spicatus chloroplast
213NC_009598CTTA313477513478511 Chloranthus spicatus chloroplast
214NC_009599CTTA313558813559811 Buxus microphylla chloroplast
215NC_009600CTTA313581013582011 Illicium oligandrum chloroplast
216NC_009601CTTA312934812935811 Dioscorea elephantipes chloroplast
217NC_009765CTTA3104271043711 Cuscuta gronovii chloroplast
218NC_009765CTTA3740127402211 Cuscuta gronovii chloroplast
219NC_009766CTTA310624110625111 Cuscuta reflexa chloroplast
220NC_009808CTTA314170614171611 Ipomoea purpurea chloroplast
221NC_009949CTTA39978998811 Cuscuta obtusiflora chloroplast
222NC_009949CTTA3727777278711 Cuscuta obtusiflora chloroplast
223NC_009950CTTA311714111715111 Lolium perenne chloroplast
224NC_009962CTTA313335613336611 Ceratophyllum demersum chloroplast
225NC_009963CTTA311014911015911 Cuscuta exaltata chloroplast
226NC_010093CTTA313110613111611 Acorus americanus chloroplast
227NC_010109CTTA314321814322811 Lemna minor chloroplast
228NC_010323CTTA313663113664111 Carica papaya chloroplast
229NC_010358CTTA314028314029311 Oenothera argillicola chloroplast
230NC_010360CTTA314084814085811 Oenothera glazioviana chloroplast
231NC_010361CTTA314033514034511 Oenothera biennis chloroplast
232NC_010362CTTA313899513900511 Oenothera parviflora chloroplast
233NC_010433CTTA313777613778611 Manihot esculenta chloroplast
234NC_010442CTTA315466215467211 Trachelium caeruleum chloroplast
235NC_010601CTTA312910712911711 Guizotia abyssinica chloroplast
236NC_010772CTTA3157301574011 Heterosigma akashiwo chloroplast
237NC_010776CTTA313680213681211 Fagopyrum esculentum subsp. ancestrale chloroplast
238NC_011032CTTA311699011700011 Brachypodium distachyon chloroplast
239NC_011600CTTA311064311065412 Vaucheria litorea chloroplast
240NC_011713CTTA311778011779011 Festuca arundinacea chloroplast
241NC_011828CTTA3921659217511 Trifolium subterraneum chloroplast
242NC_012101CTTA3321203213011 Monomastix sp. OKE-1 chloroplast
243NC_012101CTTA3665676657711 Monomastix sp. OKE-1 chloroplast
244NC_012615CTTA313634813635811 Megaleranthis saniculifolia chloroplast
245NC_012927CTTA312092212093211 Bambusa oldhamii chloroplast
246NC_013086CTTA3913019131111 Selaginella moellendorffii plastid
247NC_013088CTTA312099912100911 Dendrocalamus latiflorus chloroplast
248NC_013273CTTA312119312120311 Coix lacryma-jobi chloroplast
249NC_013498CTTA312341412342512 Ectocarpus siliculosus chloroplast
250NC_013553CTTA313011213012211 Parthenium argentatum chloroplast
251NC_013823CTTA313760013761011 Typha latifolia chloroplast
252NC_013991CTTA3705477055913 Phoenix dactylifera chloroplast
253NC_013991CTTA3955299553911 Phoenix dactylifera chloroplast
254NC_013991CTTA313441513442511 Phoenix dactylifera chloroplast
255NC_014056CTTA312274712275711 Oncidium Gower Ramsey chloroplast
256NC_014057CTTA3431704318011 Pisum sativum chloroplast
257NC_014062CTTA312137512138511 Anomochloa marantoidea chloroplast
258NC_014063CTTA3901019011111 Lathyrus sativus chloroplast
259NC_013707CTTA313313513314511 Olea europaea chloroplast