Chloroplast Motifs - Imperfect TAC Repeats
S.No | Sequence ID | Motif | Iterations | Start | End | Tract Length | Sequence Name |
---|---|---|---|---|---|---|---|
1 | NC_013086 | TAC | 9 | 64929 | 64955 | 27 | Selaginella moellendorffii plastid |
2 | NC_004543 | TAC | 8 | 41720 | 41743 | 24 | Anthoceros formosae chloroplast |
3 | NC_004543 | TAC | 7 | 72217 | 72237 | 21 | Anthoceros formosae chloroplast |
4 | NC_004543 | TAC | 7 | 110024 | 110044 | 21 | Anthoceros formosae chloroplast |
5 | NC_017754 | TAC | 5 | 52763 | 52777 | 15 | Eutreptiella gymnastica plastid |
6 | NC_020371 | TAC | 5 | 39612 | 39626 | 15 | Pavlova lutheri chloroplast |
7 | NC_022136 | TAC | 5 | 85522 | 85537 | 16 | Lygodium japonicum chloroplast |
8 | NC_009573 | TAC | 5 | 123920 | 123934 | 15 | Rhodomonas salina chloroplast |
9 | NC_011087 | TAC | 4 | 54197 | 54208 | 12 | Paulinella chromatophora chromatophore |
10 | NC_011087 | TAC | 4 | 161108 | 161118 | 11 | Paulinella chromatophora chromatophore |
11 | NC_011087 | TAC | 4 | 175929 | 175939 | 11 | Paulinella chromatophora chromatophore |
12 | NC_011087 | TAC | 4 | 880602 | 880612 | 11 | Paulinella chromatophora chromatophore |
13 | NC_014575 | TAC | 4 | 68728 | 68738 | 11 | Cedrus deodara chloroplast |
14 | NC_014575 | TAC | 4 | 116665 | 116676 | 12 | Cedrus deodara chloroplast |
15 | NC_014675 | TAC | 4 | 65944 | 65954 | 11 | Isoetes flaccida chloroplast |
16 | NC_014699 | TAC | 4 | 38815 | 38826 | 12 | Equisetum arvense chloroplast |
17 | NC_014699 | TAC | 4 | 93229 | 93240 | 12 | Equisetum arvense chloroplast |
18 | NC_015206 | TAC | 4 | 29001 | 29011 | 11 | Fragaria vesca subsp. vesca chloroplast |
19 | NC_015621 | TAC | 4 | 1943 | 1955 | 13 | Ageratina adenophora chloroplast |
20 | NC_015803 | TAC | 4 | 92774 | 92785 | 12 | Indocalamus longiauritus plastid |
21 | NC_015817 | TAC | 4 | 92714 | 92725 | 12 | Phyllostachys edulis chloroplast |
22 | NC_015820 | TAC | 4 | 92772 | 92783 | 12 | Acidosasa purpurea chloroplast |
23 | NC_015826 | TAC | 4 | 92735 | 92746 | 12 | Phyllostachys nigra var. henonis chloroplast |
24 | NC_015830 | TAC | 4 | 15569 | 15579 | 11 | Bambusa emeiensis chloroplast |
25 | NC_015830 | TAC | 4 | 92488 | 92499 | 12 | Bambusa emeiensis chloroplast |
26 | NC_015831 | TAC | 4 | 92617 | 92628 | 12 | Ferrocalamus rimosivaginus plastid |
27 | NC_015891 | TAC | 4 | 105752 | 105763 | 12 | Spirodela polyrhiza chloroplast |
28 | NC_015894 | TAC | 4 | 106389 | 106400 | 12 | Wolffiella lingulata chloroplast |
29 | NC_015899 | TAC | 4 | 105983 | 105994 | 12 | Wolffia australiana chloroplast |
30 | NC_015990 | TAC | 4 | 92295 | 92306 | 12 | Panicum virgatum chloroplast |
31 | NC_016058 | TAC | 4 | 78418 | 78428 | 11 | Larix decidua chloroplast |
32 | NC_016058 | TAC | 4 | 90682 | 90692 | 11 | Larix decidua chloroplast |
33 | NC_016058 | TAC | 4 | 118872 | 118883 | 12 | Larix decidua chloroplast |
34 | NC_016064 | TAC | 4 | 109565 | 109575 | 11 | Pseudotsuga sinensis var. wilsoniana chloroplast |
35 | NC_016064 | TAC | 4 | 121518 | 121528 | 11 | Pseudotsuga sinensis var. wilsoniana chloroplast |
36 | NC_016069 | TAC | 4 | 11711 | 11722 | 12 | Picea morrisonicola chloroplast |
37 | NC_016471 | TAC | 4 | 51519 | 51530 | 12 | Neottia nidus-avis plastid |
38 | NC_016677 | TAC | 4 | 90457 | 90468 | 12 | Leersia tisserantii plastid |
39 | NC_016699 | TAC | 4 | 92727 | 92738 | 12 | Phyllostachys propinqua chloroplast |
40 | NC_016718 | TAC | 4 | 90623 | 90634 | 12 | Rhynchoryza subulata plastid |
41 | NC_016735 | TAC | 4 | 11159 | 11170 | 12 | Fucus vesiculosus chloroplast |
42 | NC_016753 | TAC | 4 | 104331 | 104342 | 12 | Colocasia esculenta chloroplast |
43 | NC_016927 | TAC | 4 | 89150 | 89161 | 12 | Oryza meridionalis chloroplast |
44 | NC_017602 | TAC | 4 | 100062 | 100073 | 12 | Elaeis guineensis chloroplast |
45 | NC_017609 | TAC | 4 | 100937 | 100948 | 12 | Phalaenopsis equestris chloroplast |
46 | NC_017754 | TAC | 4 | 12607 | 12618 | 12 | Eutreptiella gymnastica plastid |
47 | NC_017835 | TAC | 4 | 89139 | 89150 | 12 | Oryza rufipogon chloroplast |
48 | NC_018114 | TAC | 4 | 97143 | 97154 | 12 | Erycina pusilla chloroplast |
49 | NC_018541 | TAC | 4 | 99979 | 99990 | 12 | Elodea canadensis chloroplast |
50 | NC_018569 | TAC | 4 | 9216 | 9226 | 11 | Trebouxiophyceae sp. MX-AZ01 chloroplast |
51 | NC_018766 | TAC | 4 | 28992 | 29002 | 11 | Fragaria vesca subsp. bracteata chloroplast |
52 | NC_018767 | TAC | 4 | 29012 | 29022 | 11 | Fragaria mandshurica plastid |
53 | NC_019601 | TAC | 4 | 28960 | 28970 | 11 | Fragaria chiloensis chloroplast |
54 | NC_019602 | TAC | 4 | 28959 | 28969 | 11 | Fragaria virginiana chloroplast |
55 | NC_019648 | TAC | 4 | 89234 | 89245 | 12 | Festuca altissima plastid |
56 | NC_019649 | TAC | 4 | 87709 | 87720 | 12 | Festuca ovina plastid |
57 | NC_019650 | TAC | 4 | 89355 | 89366 | 12 | Festuca pratensis plastid |
58 | NC_019651 | TAC | 4 | 89267 | 89278 | 12 | Lolium multiflorum plastid |
59 | NC_020146 | TAC | 4 | 4738 | 4750 | 13 | Equisetum hyemale chloroplast |
60 | NC_020319 | TAC | 4 | 71765 | 71776 | 12 | Cycas revoluta chloroplast |
61 | NC_020319 | TAC | 4 | 127507 | 127518 | 12 | Cycas revoluta chloroplast |
62 | NC_020321 | TAC | 4 | 13330 | 13341 | 12 | Taxus mairei voucher NN014 chloroplast |
63 | NC_020321 | TAC | 4 | 93631 | 93642 | 12 | Taxus mairei voucher NN014 chloroplast |
64 | NC_020341 | TAC | 4 | 92133 | 92144 | 12 | Arundinaria gigantea chloroplast |
65 | NC_020362 | TAC | 4 | 104612 | 104623 | 12 | Heliconia collinsiana plastid |
66 | NC_020363 | TAC | 4 | 14333 | 14343 | 11 | Zingiber spectabile plastid |
67 | NC_020363 | TAC | 4 | 100122 | 100133 | 12 | Zingiber spectabile plastid |
68 | NC_020364 | TAC | 4 | 100746 | 100757 | 12 | Pseudophoenix vinifera plastid |
69 | NC_020365 | TAC | 4 | 100577 | 100588 | 12 | Calamus caryotoides plastid |
70 | NC_020366 | TAC | 4 | 101439 | 101450 | 12 | Bismarckia nobilis plastid |
71 | NC_020367 | TAC | 4 | 101301 | 101312 | 12 | Dasypogon bromeliifolius plastid |
72 | NC_020460 | TAC | 4 | 33684 | 33695 | 12 | Euglena viridis culture-collection ATCC:PRA110 chloroplast |
73 | NC_020795 | TAC | 4 | 42756 | 42766 | 11 | Chondrus crispus plastid complete genome |
74 | NC_021189 | TAC | 4 | 90301 | 90313 | 13 | Pyropia haitanensis voucher PH-38 chloroplast |
75 | NC_021189 | TAC | 4 | 133570 | 133580 | 11 | Pyropia haitanensis voucher PH-38 chloroplast |
76 | NC_021189 | TAC | 4 | 162854 | 162865 | 12 | Pyropia haitanensis voucher PH-38 chloroplast |
77 | NC_021372 | TAC | 4 | 94027 | 94038 | 12 | Pharus latifolius chloroplast |
78 | NC_021429 | TAC | 4 | 100657 | 100668 | 12 | Cymbidium aloifolium voucher KUN:YJB100604 chloroplast |
79 | NC_021429 | TAC | 4 | 120793 | 120804 | 12 | Cymbidium aloifolium voucher KUN:YJB100604 chloroplast |
80 | NC_021430 | TAC | 4 | 99951 | 99962 | 12 | Cymbidium sinense voucher KUN:YJB100605 chloroplast |
81 | NC_021431 | TAC | 4 | 99998 | 100009 | 12 | Cymbidium tortisepalum voucher KUN:HJL091027 chloroplast |
82 | NC_021432 | TAC | 4 | 99955 | 99966 | 12 | Cymbidium tracyanum voucher KUN:YJB100606 chloroplast |
83 | NC_021433 | TAC | 4 | 99967 | 99978 | 12 | Cymbidium mannii voucher KUN:YJB100602 chloroplast |
84 | NC_021438 | TAC | 4 | 76313 | 76324 | 12 | Gnetum montanum chloroplast |
85 | NC_021439 | TAC | 4 | 108194 | 108204 | 11 | Pinus massoniana chloroplast |
86 | NC_021439 | TAC | 4 | 118669 | 118679 | 11 | Pinus massoniana chloroplast |
87 | NC_021440 | TAC | 4 | 109994 | 110004 | 11 | Pinus taeda chloroplast |
88 | NC_021440 | TAC | 4 | 120479 | 120489 | 11 | Pinus taeda chloroplast |
89 | NC_021449 | TAC | 4 | 6914 | 6925 | 12 | Utricularia gibba chloroplast |
90 | NC_021618 | TAC | 4 | 12109 | 12120 | 12 | Grateloupia taiwanensis plastid |
91 | NC_021618 | TAC | 4 | 47672 | 47683 | 12 | Grateloupia taiwanensis plastid |
92 | NC_021618 | TAC | 4 | 98387 | 98398 | 12 | Grateloupia taiwanensis plastid |
93 | NC_021760 | TAC | 4 | 91444 | 91455 | 12 | Triticum monococcum chloroplast |
94 | NC_021761 | TAC | 4 | 89876 | 89887 | 12 | Secale cereale chloroplast |
95 | NC_021762 | TAC | 4 | 90819 | 90830 | 12 | Triticum urartu chloroplast |
96 | NC_021936 | TAC | 4 | 103161 | 103172 | 12 | Najas flexilis chloroplast |
97 | NC_022133 | TAC | 4 | 89159 | 89170 | 12 | Aegilops tauschii chloroplast |
98 | NC_022135 | TAC | 4 | 88565 | 88576 | 12 | Aegilops speltoides isolate SPE0661 chloroplast |
99 | NC_000925 | TAC | 4 | 51553 | 51564 | 12 | Porphyra purpurea chloroplast |
100 | NC_000925 | TAC | 4 | 159785 | 159796 | 12 | Porphyra purpurea chloroplast |
101 | NC_000926 | TAC | 4 | 113069 | 113080 | 12 | Guillardia theta chloroplast |
102 | NC_001320 | TAC | 4 | 89142 | 89153 | 12 | Oryza sativa Japonica Group plastid |
103 | NC_001631 | TAC | 4 | 108203 | 108213 | 11 | Pinus thunbergii chloroplast |
104 | NC_001631 | TAC | 4 | 118557 | 118567 | 11 | Pinus thunbergii chloroplast |
105 | NC_001666 | TAC | 4 | 92970 | 92981 | 12 | Zea mays chloroplast |
106 | NC_001675 | TAC | 4 | 111722 | 111733 | 12 | Cyanophora paradoxa cyanelle |
107 | NC_002186 | TAC | 4 | 73206 | 73217 | 12 | Mesostigma viride chloroplast |
108 | NC_002186 | TAC | 4 | 93675 | 93686 | 12 | Mesostigma viride chloroplast |
109 | NC_002762 | TAC | 4 | 88899 | 88910 | 12 | Triticum aestivum chloroplast |
110 | NC_004115 | TAC | 4 | 113281 | 113292 | 12 | Chaetosphaeridium globosum chloroplast |
111 | NC_004543 | TAC | 4 | 52747 | 52757 | 11 | Anthoceros formosae chloroplast |
112 | NC_004677 | TAC | 4 | 116074 | 116084 | 11 | Pinus koraiensis chloroplast |
113 | NC_004823 | TAC | 4 | 34494 | 34505 | 12 | Eimeria tenella strain Penn State apicoplast |
114 | NC_005086 | TAC | 4 | 78294 | 78305 | 12 | Amborella trichopoda chloroplast |
115 | NC_005086 | TAC | 4 | 105387 | 105398 | 12 | Amborella trichopoda chloroplast |
116 | NC_005353 | TAC | 4 | 169900 | 169911 | 12 | Chlamydomonas reinhardtii chloroplast |
117 | NC_005878 | TAC | 4 | 14112 | 14123 | 12 | Saccharum hybrid cultivar SP-80-3280 chloroplast |
118 | NC_005973 | TAC | 4 | 89089 | 89100 | 12 | Oryza nivara chloroplast |
119 | NC_006050 | TAC | 4 | 104358 | 104369 | 12 | Nymphaea alba chloroplast |
120 | NC_006084 | TAC | 4 | 93669 | 93680 | 12 | Saccharum hybrid cultivar NCo 310 chloroplast |
121 | NC_006137 | TAC | 4 | 117664 | 117675 | 12 | Gracilaria tenuistipitata var. liui chloroplast |
122 | NC_006861 | TAC | 4 | 104307 | 104318 | 12 | Huperzia lucidula chloroplast |
123 | NC_007499 | TAC | 4 | 100897 | 100908 | 12 | Phalaenopsis aphrodite subsp. formosana chloroplast |
124 | NC_007578 | TAC | 4 | 1960 | 1972 | 13 | Lactuca sativa chloroplast |
125 | NC_007932 | TAC | 4 | 90389 | 90401 | 13 | Porphyra yezoensis chloroplast |
126 | NC_007932 | TAC | 4 | 160696 | 160707 | 12 | Porphyra yezoensis chloroplast |
127 | NC_007932 | TAC | 4 | 178171 | 178181 | 11 | Porphyra yezoensis chloroplast |
128 | NC_007977 | TAC | 4 | 1950 | 1962 | 13 | Helianthus annuus chloroplast |
129 | NC_008099 | TAC | 4 | 106088 | 106099 | 12 | Oltmannsiellopsis viridis chloroplast |
130 | NC_008117 | TAC | 4 | 81494 | 81505 | 12 | Zygnema circumcarinatum chloroplast |
131 | NC_008155 | TAC | 4 | 89094 | 89105 | 12 | Oryza sativa Indica Group chloroplast |
132 | NC_008372 | TAC | 4 | 122247 | 122258 | 12 | Stigeoclonium helveticum chloroplast |
133 | NC_008408 | TAC | 4 | 2915 | 2926 | 12 | Bigelowiella natans plastid |
134 | NC_008590 | TAC | 4 | 90527 | 90538 | 12 | Hordeum vulgare subsp. vulgare chloroplast |
135 | NC_008591 | TAC | 4 | 90575 | 90586 | 12 | Agrostis stolonifera chloroplast |
136 | NC_008602 | TAC | 4 | 93835 | 93846 | 12 | Sorghum bicolor chloroplast |
137 | NC_008788 | TAC | 4 | 104967 | 104978 | 12 | Nuphar advena chloroplast |
138 | NC_008796 | TAC | 4 | 139952 | 139963 | 12 | Ranunculus macranthus chloroplast |
139 | NC_009265 | TAC | 4 | 28400 | 28411 | 12 | Aethionema cordifolium chloroplast |
140 | NC_009266 | TAC | 4 | 28431 | 28442 | 12 | Aethionema grandiflorum chloroplast |
141 | NC_009273 | TAC | 4 | 28331 | 28342 | 12 | Lepidium virginicum chloroplast |
142 | NC_009274 | TAC | 4 | 27849 | 27859 | 11 | Lobularia maritima chloroplast |
143 | NC_009573 | TAC | 4 | 115490 | 115501 | 12 | Rhodomonas salina chloroplast |
144 | NC_009573 | TAC | 4 | 122304 | 122314 | 11 | Rhodomonas salina chloroplast |
145 | NC_009600 | TAC | 4 | 101841 | 101852 | 12 | Illicium oligandrum chloroplast |
146 | NC_009600 | TAC | 4 | 118243 | 118253 | 11 | Illicium oligandrum chloroplast |
147 | NC_009601 | TAC | 4 | 97181 | 97192 | 12 | Dioscorea elephantipes chloroplast |
148 | NC_009618 | TAC | 4 | 103497 | 103508 | 12 | Cycas taitungensis chloroplast |
149 | NC_009808 | TAC | 4 | 112299 | 112310 | 12 | Ipomoea purpurea chloroplast |
150 | NC_009950 | TAC | 4 | 89384 | 89395 | 12 | Lolium perenne chloroplast |
151 | NC_009962 | TAC | 4 | 100509 | 100520 | 12 | Ceratophyllum demersum chloroplast |
152 | NC_010109 | TAC | 4 | 104079 | 104090 | 12 | Lemna minor chloroplast |
153 | NC_010442 | TAC | 4 | 54022 | 54032 | 11 | Trachelium caeruleum chloroplast |
154 | NC_010654 | TAC | 4 | 78569 | 78580 | 12 | Welwitschia mirabilis chloroplast |
155 | NC_010776 | TAC | 4 | 26501 | 26513 | 13 | Fagopyrum esculentum subsp. ancestrale chloroplast |
156 | NC_011031 | TAC | 4 | 99405 | 99416 | 12 | Oedogonium cardiacum chloroplast |
157 | NC_011032 | TAC | 4 | 88958 | 88969 | 12 | Brachypodium distachyon chloroplast |
158 | NC_011152 | TAC | 4 | 119158 | 119168 | 11 | Picea sitchensis chloroplast |
159 | NC_011153 | TAC | 4 | 108976 | 108986 | 11 | Pinus contorta chloroplast |
160 | NC_011153 | TAC | 4 | 119393 | 119403 | 11 | Pinus contorta chloroplast |
161 | NC_011154 | TAC | 4 | 116592 | 116602 | 11 | Pinus gerardiana chloroplast |
162 | NC_011155 | TAC | 4 | 115981 | 115991 | 11 | Pinus krempfii chloroplast |
163 | NC_011156 | TAC | 4 | 116209 | 116219 | 11 | Pinus lambertiana chloroplast |
164 | NC_011158 | TAC | 4 | 115458 | 115468 | 11 | Pinus monophylla chloroplast |
165 | NC_011159 | TAC | 4 | 115819 | 115829 | 11 | Pinus nelsonii chloroplast |
166 | NC_011163 | TAC | 4 | 78910 | 78924 | 15 | Cicer arietinum chloroplast |
167 | NC_011395 | TAC | 4 | 29924 | 29935 | 12 | Babesia bovis T2Bo apicoplast |
168 | NC_011600 | TAC | 4 | 54933 | 54945 | 13 | Vaucheria litorea chloroplast |
169 | NC_011713 | TAC | 4 | 90095 | 90106 | 12 | Festuca arundinacea chloroplast |
170 | NC_011828 | TAC | 4 | 129632 | 129643 | 12 | Trifolium subterraneum chloroplast |
171 | NC_011930 | TAC | 4 | 3846 | 3857 | 12 | Keteleeria davidiana chloroplast |
172 | NC_011930 | TAC | 4 | 28327 | 28337 | 11 | Keteleeria davidiana chloroplast |
173 | NC_011930 | TAC | 4 | 39587 | 39597 | 11 | Keteleeria davidiana chloroplast |
174 | NC_011942 | TAC | 4 | 18776 | 18787 | 12 | Gnetum parvifolium chloroplast |
175 | NC_011954 | TAC | 4 | 17364 | 17375 | 12 | Ephedra equisetina chloroplast |
176 | NC_012224 | TAC | 4 | 35820 | 35830 | 11 | Jatropha curcas chloroplast |
177 | NC_012575 | TAC | 4 | 55292 | 55303 | 12 | Micromonas sp. RCC299 chloroplast |
178 | NC_012615 | TAC | 4 | 15109 | 15119 | 11 | Megaleranthis saniculifolia chloroplast |
179 | NC_012818 | TAC | 4 | 73576 | 73586 | 11 | Alsophila spinulosa chloroplast |
180 | NC_012898 | TAC | 4 | 49578 | 49588 | 11 | Aureococcus anophagefferens chloroplast |
181 | NC_012927 | TAC | 4 | 15522 | 15532 | 11 | Bambusa oldhamii chloroplast |
182 | NC_012927 | TAC | 4 | 92385 | 92396 | 12 | Bambusa oldhamii chloroplast |
183 | NC_013088 | TAC | 4 | 15624 | 15634 | 11 | Dendrocalamus latiflorus chloroplast |
184 | NC_013088 | TAC | 4 | 92471 | 92482 | 12 | Dendrocalamus latiflorus chloroplast |
185 | NC_013273 | TAC | 4 | 93413 | 93424 | 12 | Coix lacryma-jobi chloroplast |
186 | NC_013553 | TAC | 4 | 1867 | 1879 | 13 | Parthenium argentatum chloroplast |
187 | NC_013823 | TAC | 4 | 104241 | 104252 | 12 | Typha latifolia chloroplast |
188 | NC_013991 | TAC | 4 | 101257 | 101268 | 12 | Phoenix dactylifera chloroplast |
189 | NC_014056 | TAC | 4 | 97079 | 97090 | 12 | Oncidium Gower Ramsey chloroplast |
190 | NC_014062 | TAC | 4 | 90376 | 90387 | 12 | Anomochloa marantoidea chloroplast |