ChloroMitoSSRDB 2.0 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

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Chloroplast Motifs - Imperfect TCAT Repeats

S.NoSequence IDMotifIterationsStartEndTract LengthSequence Name
1NC_013086TCAT6507945081724 Selaginella moellendorffii plastid
2NC_021109TCAT526122626124520Pleodorina starrii plastid
3NC_006861TCAT510373110375121 Huperzia lucidula chloroplast
4NC_011163TCAT511795011796920 Cicer arietinum chloroplast
5NC_021109TCAT426800426801916Pleodorina starrii plastid
6NC_014345TCAT3271812719313Alveolata sp. CCMP3155 chloroplast
7NC_014346TCAT326116226117312Floydiella terrestris chloroplast
8NC_014573TCAT3815008151112Geranium palmatum plastid
9NC_014575TCAT311005611006712Cedrus deodara chloroplast
10NC_014675TCAT312826112827313Isoetes flaccida chloroplast
11NC_014676TCAT3741327414312Theobroma cacao chloroplast
12NC_014697TCAT3271722718211Prunus persica chloroplast
13NC_014699TCAT3220082201912Equisetum arvense chloroplast
14NC_015204TCAT3734047341512Gossypium thurberi chloroplast
15NC_015206TCAT3263652637511Fragaria vesca subsp. vesca chloroplast
16NC_015605TCAT3290252903511Nelumbo lutea chloroplast
17NC_015610TCAT3291932920311Nelumbo nucifera chloroplast
18NC_015892TCAT3280652807511Magnolia kwangsiensis chloroplast
19NC_015996TCAT3280452805511Pyrus pyrifolia chloroplast
20NC_016063TCAT3499034991412Cephalotaxus wilsoniana chloroplast DNA
21NC_016069TCAT3691786918912Picea morrisonicola chloroplast
22NC_016069TCAT312088712089812Picea morrisonicola chloroplast
23NC_016430TCAT3282692827911Eleutherococcus senticosus chloroplast
24NC_016433TCAT312445512446612Sesamum indicum chloroplast
25NC_016471TCAT3913719138111Neottia nidus-avis plastid
26NC_016668TCAT3733777338812Gossypium raimondii chloroplast
27NC_016670TCAT3735637357412Gossypium darwinii chloroplast
28NC_016690TCAT3735837359412Gossypium tomentosum chloroplast
29NC_016692TCAT3734287343912Gossypium herbaceum subsp. africanum chloroplast
30NC_016711TCAT3734777348812Gossypium mustelinum chloroplast
31NC_016712TCAT3733657337612Gossypium arboreum chloroplast
32NC_016921TCAT3275852759511Pentactina rupicola chloroplast
33NC_016986TCAT38484849411Ginkgo biloba chloroplast
34NC_016986TCAT3344003441011Ginkgo biloba chloroplast
35NC_016986TCAT3739637397412Ginkgo biloba chloroplast
36NC_017609TCAT3299822999312Phalaenopsis equestris chloroplast
37NC_017609TCAT3601496015911Phalaenopsis equestris chloroplast
38NC_017894TCAT3734527346312Gossypium gossypioides chloroplast
39NC_018109TCAT3725947260512Gossypium incanum chloroplast
40NC_018110TCAT3728237283412Gossypium somalense chloroplast
41NC_018112TCAT3728557286612Gossypium areysianum chloroplast
42NC_018113TCAT3731057311612Gossypium robinsonii chloroplast
43NC_018357TCAT3280742808411Magnolia denudata chloroplast
44NC_018541TCAT312738012739112Elodea canadensis chloroplast
45NC_018552TCAT3274972750711Capsicum annuum chloroplast
46NC_018766TCAT3263682637811Fragaria vesca subsp. bracteata chloroplast
47NC_018767TCAT3263812639111Fragaria mandshurica plastid
48NC_019601TCAT3263542636411Fragaria chiloensis chloroplast
49NC_019602TCAT3263532636311Fragaria virginiana chloroplast
50NC_020147TCAT3730077301812Ophioglossum californicum chloroplast
51NC_020147TCAT311820811822013Ophioglossum californicum chloroplast
52NC_020316TCAT3281582816811Magnolia officinalis chloroplast
53NC_020317TCAT3281832819311Magnolia officinalis subsp. biloba voucher SC001 chloroplast
54NC_020318TCAT3280952810511Magnolia grandiflora voucher NJ016 chloroplast
55NC_020319TCAT311457411458613Cycas revoluta chloroplast
56NC_020321TCAT3853278533812Taxus mairei voucher NN014 chloroplast
57NC_021075TCAT310404310405311Calliarthron tuberculosum chloroplast
58NC_021109TCAT311871411872512Pleodorina starrii plastid
59NC_021109TCAT326574326575816Pleodorina starrii plastid
60NC_021110TCAT3494104942112Cephalotaxus oliveri chloroplast
61NC_021111TCAT3911999121113Cistanche deserticola chloroplast
62NC_021425TCAT3278142782411Tetracentron sinense chloroplast
63NC_021426TCAT3286682867811Trochodendron aralioides chloroplast
64NC_021438TCAT311330811331912Gnetum montanum chloroplast
65NC_021455TCAT3268302684011Prinsepia utilis plastid
66NC_021636TCAT312069512070612Glycine tomentella voucher CSIRO:G1403 chloroplast
67NC_021645TCAT312044412045512Glycine cyrtoloba voucher CSIRO:G1267 chloroplast
68NC_021646TCAT312074412075512Glycine stenophita voucher CSIRO:G1974 chloroplast
69NC_021647TCAT312049012050112Glycine canescens voucher CSIRO:G1232 chloroplast
70NC_021648TCAT312073112074212Glycine dolichocarpa voucher CSIRO:G1134 chloroplast
71NC_021649TCAT312097712098812Glycine falcata voucher CSIRO:G1718 chloroplast
72NC_021650TCAT312074712075812Glycine syndetika voucher CSIRO:G1300 chloroplast
73NC_021936TCAT3316733168412Najas flexilis chloroplast
74NC_021936TCAT312499612500712Najas flexilis chloroplast
75NC_022099TCAT3455104552112Medicago truncatula cultivar Jemalong 2HA plastid
76NC_022099TCAT3897828979211Medicago truncatula cultivar Jemalong 2HA plastid
77NC_022100TCAT3455604557112Medicago truncatula cultivar Borung plastid
78NC_022100TCAT3895818959111Medicago truncatula cultivar Borung plastid
79NC_000925TCAT317752517753612 Porphyra purpurea chloroplast
80NC_000926TCAT3123011231111 Guillardia theta chloroplast
81NC_000927TCAT310178510179511 Nephroselmis olivacea chloroplast
82NC_003119TCAT3455104552112 Medicago truncatula chloroplast
83NC_003119TCAT3897828979211 Medicago truncatula chloroplast
84NC_005086TCAT3225482255811 Amborella trichopoda chloroplast
85NC_006290TCAT3282692827911 Panax ginseng chloroplast
86NC_006861TCAT3147801479112 Huperzia lucidula chloroplast
87NC_007407TCAT38671868212 Acorus calamus plastid
88NC_007499TCAT3299092992012 Phalaenopsis aphrodite subsp. formosana chloroplast
89NC_007499TCAT3600556006511 Phalaenopsis aphrodite subsp. formosana chloroplast
90NC_007942TCAT312014712015812 Glycine max chloroplast
91NC_007944TCAT3734577346812 Gossypium hirsutum chloroplast
92NC_008097TCAT3454334544311 Chara vulgaris chloroplast
93NC_008235TCAT3290692908012 Populus alba chloroplast
94NC_008325TCAT31807181913 Daucus carota chloroplast
95NC_008326TCAT3281822819211 Liriodendron tulipifera chloroplast
96NC_008335TCAT3289212893111 Platanus occidentalis chloroplast
97NC_008336TCAT3265632657311 Nandina domestica chloroplast
98NC_008359TCAT3280942810411 Morus indica chloroplast
99NC_008788TCAT3561235613513 Nuphar advena chloroplast
100NC_009143TCAT3292352924612 Populus trichocarpa chloroplast
101NC_009265TCAT3704807049112 Aethionema cordifolium chloroplast
102NC_009266TCAT3705447055512 Aethionema grandiflorum chloroplast
103NC_009573TCAT313444213445211 Rhodomonas salina chloroplast
104NC_009618TCAT3905679057913 Cycas taitungensis chloroplast
105NC_009618TCAT311814511815511 Cycas taitungensis chloroplast
106NC_010093TCAT38347835812 Acorus americanus chloroplast
107NC_011031TCAT317763417764512 Oedogonium cardiacum chloroplast
108NC_011154TCAT310312610313712 Pinus gerardiana chloroplast
109NC_011158TCAT310263410264512 Pinus monophylla chloroplast
110NC_011159TCAT310344110345212 Pinus nelsonii chloroplast
111NC_011828TCAT3661426615211 Trifolium subterraneum chloroplast
112NC_011828TCAT311131211132312 Trifolium subterraneum chloroplast
113NC_011942TCAT3557085571912 Gnetum parvifolium chloroplast
114NC_014057TCAT3123591236911 Pisum sativum chloroplast
115NC_014057TCAT3187461875712 Pisum sativum chloroplast
116NC_014057TCAT3928639287311 Pisum sativum chloroplast