Chloroplast Motifs - Imperfect TCAT Repeats
S.No | Sequence ID | Motif | Iterations | Start | End | Tract Length | Sequence Name |
---|---|---|---|---|---|---|---|
1 | NC_013086 | TCAT | 6 | 50794 | 50817 | 24 | Selaginella moellendorffii plastid |
2 | NC_021109 | TCAT | 5 | 261226 | 261245 | 20 | Pleodorina starrii plastid |
3 | NC_006861 | TCAT | 5 | 103731 | 103751 | 21 | Huperzia lucidula chloroplast |
4 | NC_011163 | TCAT | 5 | 117950 | 117969 | 20 | Cicer arietinum chloroplast |
5 | NC_021109 | TCAT | 4 | 268004 | 268019 | 16 | Pleodorina starrii plastid |
6 | NC_014345 | TCAT | 3 | 27181 | 27193 | 13 | Alveolata sp. CCMP3155 chloroplast |
7 | NC_014346 | TCAT | 3 | 261162 | 261173 | 12 | Floydiella terrestris chloroplast |
8 | NC_014573 | TCAT | 3 | 81500 | 81511 | 12 | Geranium palmatum plastid |
9 | NC_014575 | TCAT | 3 | 110056 | 110067 | 12 | Cedrus deodara chloroplast |
10 | NC_014675 | TCAT | 3 | 128261 | 128273 | 13 | Isoetes flaccida chloroplast |
11 | NC_014676 | TCAT | 3 | 74132 | 74143 | 12 | Theobroma cacao chloroplast |
12 | NC_014697 | TCAT | 3 | 27172 | 27182 | 11 | Prunus persica chloroplast |
13 | NC_014699 | TCAT | 3 | 22008 | 22019 | 12 | Equisetum arvense chloroplast |
14 | NC_015204 | TCAT | 3 | 73404 | 73415 | 12 | Gossypium thurberi chloroplast |
15 | NC_015206 | TCAT | 3 | 26365 | 26375 | 11 | Fragaria vesca subsp. vesca chloroplast |
16 | NC_015605 | TCAT | 3 | 29025 | 29035 | 11 | Nelumbo lutea chloroplast |
17 | NC_015610 | TCAT | 3 | 29193 | 29203 | 11 | Nelumbo nucifera chloroplast |
18 | NC_015892 | TCAT | 3 | 28065 | 28075 | 11 | Magnolia kwangsiensis chloroplast |
19 | NC_015996 | TCAT | 3 | 28045 | 28055 | 11 | Pyrus pyrifolia chloroplast |
20 | NC_016063 | TCAT | 3 | 49903 | 49914 | 12 | Cephalotaxus wilsoniana chloroplast DNA |
21 | NC_016069 | TCAT | 3 | 69178 | 69189 | 12 | Picea morrisonicola chloroplast |
22 | NC_016069 | TCAT | 3 | 120887 | 120898 | 12 | Picea morrisonicola chloroplast |
23 | NC_016430 | TCAT | 3 | 28269 | 28279 | 11 | Eleutherococcus senticosus chloroplast |
24 | NC_016433 | TCAT | 3 | 124455 | 124466 | 12 | Sesamum indicum chloroplast |
25 | NC_016471 | TCAT | 3 | 91371 | 91381 | 11 | Neottia nidus-avis plastid |
26 | NC_016668 | TCAT | 3 | 73377 | 73388 | 12 | Gossypium raimondii chloroplast |
27 | NC_016670 | TCAT | 3 | 73563 | 73574 | 12 | Gossypium darwinii chloroplast |
28 | NC_016690 | TCAT | 3 | 73583 | 73594 | 12 | Gossypium tomentosum chloroplast |
29 | NC_016692 | TCAT | 3 | 73428 | 73439 | 12 | Gossypium herbaceum subsp. africanum chloroplast |
30 | NC_016711 | TCAT | 3 | 73477 | 73488 | 12 | Gossypium mustelinum chloroplast |
31 | NC_016712 | TCAT | 3 | 73365 | 73376 | 12 | Gossypium arboreum chloroplast |
32 | NC_016921 | TCAT | 3 | 27585 | 27595 | 11 | Pentactina rupicola chloroplast |
33 | NC_016986 | TCAT | 3 | 8484 | 8494 | 11 | Ginkgo biloba chloroplast |
34 | NC_016986 | TCAT | 3 | 34400 | 34410 | 11 | Ginkgo biloba chloroplast |
35 | NC_016986 | TCAT | 3 | 73963 | 73974 | 12 | Ginkgo biloba chloroplast |
36 | NC_017609 | TCAT | 3 | 29982 | 29993 | 12 | Phalaenopsis equestris chloroplast |
37 | NC_017609 | TCAT | 3 | 60149 | 60159 | 11 | Phalaenopsis equestris chloroplast |
38 | NC_017894 | TCAT | 3 | 73452 | 73463 | 12 | Gossypium gossypioides chloroplast |
39 | NC_018109 | TCAT | 3 | 72594 | 72605 | 12 | Gossypium incanum chloroplast |
40 | NC_018110 | TCAT | 3 | 72823 | 72834 | 12 | Gossypium somalense chloroplast |
41 | NC_018112 | TCAT | 3 | 72855 | 72866 | 12 | Gossypium areysianum chloroplast |
42 | NC_018113 | TCAT | 3 | 73105 | 73116 | 12 | Gossypium robinsonii chloroplast |
43 | NC_018357 | TCAT | 3 | 28074 | 28084 | 11 | Magnolia denudata chloroplast |
44 | NC_018541 | TCAT | 3 | 127380 | 127391 | 12 | Elodea canadensis chloroplast |
45 | NC_018552 | TCAT | 3 | 27497 | 27507 | 11 | Capsicum annuum chloroplast |
46 | NC_018766 | TCAT | 3 | 26368 | 26378 | 11 | Fragaria vesca subsp. bracteata chloroplast |
47 | NC_018767 | TCAT | 3 | 26381 | 26391 | 11 | Fragaria mandshurica plastid |
48 | NC_019601 | TCAT | 3 | 26354 | 26364 | 11 | Fragaria chiloensis chloroplast |
49 | NC_019602 | TCAT | 3 | 26353 | 26363 | 11 | Fragaria virginiana chloroplast |
50 | NC_020147 | TCAT | 3 | 73007 | 73018 | 12 | Ophioglossum californicum chloroplast |
51 | NC_020147 | TCAT | 3 | 118208 | 118220 | 13 | Ophioglossum californicum chloroplast |
52 | NC_020316 | TCAT | 3 | 28158 | 28168 | 11 | Magnolia officinalis chloroplast |
53 | NC_020317 | TCAT | 3 | 28183 | 28193 | 11 | Magnolia officinalis subsp. biloba voucher SC001 chloroplast |
54 | NC_020318 | TCAT | 3 | 28095 | 28105 | 11 | Magnolia grandiflora voucher NJ016 chloroplast |
55 | NC_020319 | TCAT | 3 | 114574 | 114586 | 13 | Cycas revoluta chloroplast |
56 | NC_020321 | TCAT | 3 | 85327 | 85338 | 12 | Taxus mairei voucher NN014 chloroplast |
57 | NC_021075 | TCAT | 3 | 104043 | 104053 | 11 | Calliarthron tuberculosum chloroplast |
58 | NC_021109 | TCAT | 3 | 118714 | 118725 | 12 | Pleodorina starrii plastid |
59 | NC_021109 | TCAT | 3 | 265743 | 265758 | 16 | Pleodorina starrii plastid |
60 | NC_021110 | TCAT | 3 | 49410 | 49421 | 12 | Cephalotaxus oliveri chloroplast |
61 | NC_021111 | TCAT | 3 | 91199 | 91211 | 13 | Cistanche deserticola chloroplast |
62 | NC_021425 | TCAT | 3 | 27814 | 27824 | 11 | Tetracentron sinense chloroplast |
63 | NC_021426 | TCAT | 3 | 28668 | 28678 | 11 | Trochodendron aralioides chloroplast |
64 | NC_021438 | TCAT | 3 | 113308 | 113319 | 12 | Gnetum montanum chloroplast |
65 | NC_021455 | TCAT | 3 | 26830 | 26840 | 11 | Prinsepia utilis plastid |
66 | NC_021636 | TCAT | 3 | 120695 | 120706 | 12 | Glycine tomentella voucher CSIRO:G1403 chloroplast |
67 | NC_021645 | TCAT | 3 | 120444 | 120455 | 12 | Glycine cyrtoloba voucher CSIRO:G1267 chloroplast |
68 | NC_021646 | TCAT | 3 | 120744 | 120755 | 12 | Glycine stenophita voucher CSIRO:G1974 chloroplast |
69 | NC_021647 | TCAT | 3 | 120490 | 120501 | 12 | Glycine canescens voucher CSIRO:G1232 chloroplast |
70 | NC_021648 | TCAT | 3 | 120731 | 120742 | 12 | Glycine dolichocarpa voucher CSIRO:G1134 chloroplast |
71 | NC_021649 | TCAT | 3 | 120977 | 120988 | 12 | Glycine falcata voucher CSIRO:G1718 chloroplast |
72 | NC_021650 | TCAT | 3 | 120747 | 120758 | 12 | Glycine syndetika voucher CSIRO:G1300 chloroplast |
73 | NC_021936 | TCAT | 3 | 31673 | 31684 | 12 | Najas flexilis chloroplast |
74 | NC_021936 | TCAT | 3 | 124996 | 125007 | 12 | Najas flexilis chloroplast |
75 | NC_022099 | TCAT | 3 | 45510 | 45521 | 12 | Medicago truncatula cultivar Jemalong 2HA plastid |
76 | NC_022099 | TCAT | 3 | 89782 | 89792 | 11 | Medicago truncatula cultivar Jemalong 2HA plastid |
77 | NC_022100 | TCAT | 3 | 45560 | 45571 | 12 | Medicago truncatula cultivar Borung plastid |
78 | NC_022100 | TCAT | 3 | 89581 | 89591 | 11 | Medicago truncatula cultivar Borung plastid |
79 | NC_000925 | TCAT | 3 | 177525 | 177536 | 12 | Porphyra purpurea chloroplast |
80 | NC_000926 | TCAT | 3 | 12301 | 12311 | 11 | Guillardia theta chloroplast |
81 | NC_000927 | TCAT | 3 | 101785 | 101795 | 11 | Nephroselmis olivacea chloroplast |
82 | NC_003119 | TCAT | 3 | 45510 | 45521 | 12 | Medicago truncatula chloroplast |
83 | NC_003119 | TCAT | 3 | 89782 | 89792 | 11 | Medicago truncatula chloroplast |
84 | NC_005086 | TCAT | 3 | 22548 | 22558 | 11 | Amborella trichopoda chloroplast |
85 | NC_006290 | TCAT | 3 | 28269 | 28279 | 11 | Panax ginseng chloroplast |
86 | NC_006861 | TCAT | 3 | 14780 | 14791 | 12 | Huperzia lucidula chloroplast |
87 | NC_007407 | TCAT | 3 | 8671 | 8682 | 12 | Acorus calamus plastid |
88 | NC_007499 | TCAT | 3 | 29909 | 29920 | 12 | Phalaenopsis aphrodite subsp. formosana chloroplast |
89 | NC_007499 | TCAT | 3 | 60055 | 60065 | 11 | Phalaenopsis aphrodite subsp. formosana chloroplast |
90 | NC_007942 | TCAT | 3 | 120147 | 120158 | 12 | Glycine max chloroplast |
91 | NC_007944 | TCAT | 3 | 73457 | 73468 | 12 | Gossypium hirsutum chloroplast |
92 | NC_008097 | TCAT | 3 | 45433 | 45443 | 11 | Chara vulgaris chloroplast |
93 | NC_008235 | TCAT | 3 | 29069 | 29080 | 12 | Populus alba chloroplast |
94 | NC_008325 | TCAT | 3 | 1807 | 1819 | 13 | Daucus carota chloroplast |
95 | NC_008326 | TCAT | 3 | 28182 | 28192 | 11 | Liriodendron tulipifera chloroplast |
96 | NC_008335 | TCAT | 3 | 28921 | 28931 | 11 | Platanus occidentalis chloroplast |
97 | NC_008336 | TCAT | 3 | 26563 | 26573 | 11 | Nandina domestica chloroplast |
98 | NC_008359 | TCAT | 3 | 28094 | 28104 | 11 | Morus indica chloroplast |
99 | NC_008788 | TCAT | 3 | 56123 | 56135 | 13 | Nuphar advena chloroplast |
100 | NC_009143 | TCAT | 3 | 29235 | 29246 | 12 | Populus trichocarpa chloroplast |
101 | NC_009265 | TCAT | 3 | 70480 | 70491 | 12 | Aethionema cordifolium chloroplast |
102 | NC_009266 | TCAT | 3 | 70544 | 70555 | 12 | Aethionema grandiflorum chloroplast |
103 | NC_009573 | TCAT | 3 | 134442 | 134452 | 11 | Rhodomonas salina chloroplast |
104 | NC_009618 | TCAT | 3 | 90567 | 90579 | 13 | Cycas taitungensis chloroplast |
105 | NC_009618 | TCAT | 3 | 118145 | 118155 | 11 | Cycas taitungensis chloroplast |
106 | NC_010093 | TCAT | 3 | 8347 | 8358 | 12 | Acorus americanus chloroplast |
107 | NC_011031 | TCAT | 3 | 177634 | 177645 | 12 | Oedogonium cardiacum chloroplast |
108 | NC_011154 | TCAT | 3 | 103126 | 103137 | 12 | Pinus gerardiana chloroplast |
109 | NC_011158 | TCAT | 3 | 102634 | 102645 | 12 | Pinus monophylla chloroplast |
110 | NC_011159 | TCAT | 3 | 103441 | 103452 | 12 | Pinus nelsonii chloroplast |
111 | NC_011828 | TCAT | 3 | 66142 | 66152 | 11 | Trifolium subterraneum chloroplast |
112 | NC_011828 | TCAT | 3 | 111312 | 111323 | 12 | Trifolium subterraneum chloroplast |
113 | NC_011942 | TCAT | 3 | 55708 | 55719 | 12 | Gnetum parvifolium chloroplast |
114 | NC_014057 | TCAT | 3 | 12359 | 12369 | 11 | Pisum sativum chloroplast |
115 | NC_014057 | TCAT | 3 | 18746 | 18757 | 12 | Pisum sativum chloroplast |
116 | NC_014057 | TCAT | 3 | 92863 | 92873 | 11 | Pisum sativum chloroplast |