Chloroplast Motifs - Imperfect AAGG Repeats
| S.No | Sequence ID | Motif | Iterations | Start | End | Tract Length | Sequence Name |
| 1 | NC_015990 | AAGG | 4 | 48019 | 48033 | 15 | Panicum virgatum chloroplast |
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| 2 | NC_016986 | AAGG | 4 | 110080 | 110094 | 15 | Ginkgo biloba chloroplast |
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| 3 | NC_011087 | AAGG | 3 | 819535 | 819545 | 11 | Paulinella chromatophora chromatophore |
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| 4 | NC_014340 | AAGG | 3 | 95868 | 95879 | 12 | Chromera velia strain CCMP2878 chloroplast |
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| 5 | NC_014346 | AAGG | 3 | 116937 | 116947 | 11 | Floydiella terrestris chloroplast |
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| 6 | NC_014346 | AAGG | 3 | 197453 | 197463 | 11 | Floydiella terrestris chloroplast |
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| 7 | NC_014569 | AAGG | 3 | 72172 | 72184 | 13 | Erodium texanum plastid |
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| 8 | NC_014569 | AAGG | 3 | 83844 | 83856 | 13 | Erodium texanum plastid |
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| 9 | NC_014570 | AAGG | 3 | 108171 | 108181 | 11 | Eucalyptus grandis chloroplast |
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| 10 | NC_014592 | AAGG | 3 | 83105 | 83115 | 11 | Cheilanthes lindheimeri chloroplast |
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| 11 | NC_014674 | AAGG | 3 | 109068 | 109078 | 11 | Castanea mollissima chloroplast |
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| 12 | NC_014676 | AAGG | 3 | 108830 | 108840 | 11 | Theobroma cacao chloroplast |
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| 13 | NC_014697 | AAGG | 3 | 105221 | 105231 | 11 | Prunus persica chloroplast |
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| 14 | NC_014807 | AAGG | 3 | 107607 | 107617 | 11 | Corynocarpus laevigata chloroplast |
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| 15 | NC_015084 | AAGG | 3 | 134405 | 134415 | 11 | Coccomyxa sp. C-169 plastid |
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| 16 | NC_015113 | AAGG | 3 | 103286 | 103296 | 11 | Anthriscus cerefolium chloroplast |
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| 17 | NC_015204 | AAGG | 3 | 108247 | 108257 | 11 | Gossypium thurberi chloroplast |
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| 18 | NC_015206 | AAGG | 3 | 104624 | 104634 | 11 | Fragaria vesca subsp. vesca chloroplast |
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| 19 | NC_015308 | AAGG | 3 | 108762 | 108772 | 11 | Hevea brasiliensis chloroplast |
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| 20 | NC_015401 | AAGG | 3 | 105271 | 105281 | 11 | Olea europaea subsp. europaea plastid |
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| 21 | NC_015543 | AAGG | 3 | 101206 | 101216 | 11 | Jacobaea vulgaris chloroplast |
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| 22 | NC_015604 | AAGG | 3 | 105279 | 105289 | 11 | Olea europaea subsp. cuspidata chloroplast |
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| 23 | NC_015605 | AAGG | 3 | 48215 | 48226 | 12 | Nelumbo lutea chloroplast |
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| 24 | NC_015605 | AAGG | 3 | 110960 | 110970 | 11 | Nelumbo lutea chloroplast |
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| 25 | NC_015608 | AAGG | 3 | 105363 | 105373 | 11 | Olea woodiana subsp. woodiana chloroplast |
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| 26 | NC_015610 | AAGG | 3 | 48182 | 48193 | 12 | Nelumbo nucifera chloroplast |
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| 27 | NC_015610 | AAGG | 3 | 111059 | 111069 | 11 | Nelumbo nucifera chloroplast |
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| 28 | NC_015623 | AAGG | 3 | 105290 | 105300 | 11 | Olea europaea subsp. maroccana chloroplast |
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| 29 | NC_015803 | AAGG | 3 | 104865 | 104876 | 12 | Indocalamus longiauritus plastid |
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| 30 | NC_015817 | AAGG | 3 | 104811 | 104822 | 12 | Phyllostachys edulis chloroplast |
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| 31 | NC_015820 | AAGG | 3 | 104868 | 104879 | 12 | Acidosasa purpurea chloroplast |
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| 32 | NC_015826 | AAGG | 3 | 104897 | 104908 | 12 | Phyllostachys nigra var. henonis chloroplast |
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| 33 | NC_015830 | AAGG | 3 | 104580 | 104591 | 12 | Bambusa emeiensis chloroplast |
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| 34 | NC_015831 | AAGG | 3 | 104720 | 104731 | 12 | Ferrocalamus rimosivaginus plastid |
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| 35 | NC_015891 | AAGG | 3 | 73255 | 73265 | 11 | Spirodela polyrhiza chloroplast |
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| 36 | NC_015983 | AAGG | 3 | 104914 | 104924 | 11 | Cucumis melo subsp. melo chloroplast |
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| 37 | NC_015996 | AAGG | 3 | 107110 | 107120 | 11 | Pyrus pyrifolia chloroplast |
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| 38 | NC_016068 | AAGG | 3 | 48420 | 48430 | 11 | Nicotiana undulata chloroplast |
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| 39 | NC_016068 | AAGG | 3 | 105089 | 105099 | 11 | Nicotiana undulata chloroplast |
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| 40 | NC_016430 | AAGG | 3 | 105236 | 105246 | 11 | Eleutherococcus senticosus chloroplast |
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| 41 | NC_016433 | AAGG | 3 | 103338 | 103348 | 11 | Sesamum indicum chloroplast |
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| 42 | NC_016468 | AAGG | 3 | 103363 | 103373 | 11 | Boea hygrometrica chloroplast |
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| 43 | NC_016668 | AAGG | 3 | 108205 | 108215 | 11 | Gossypium raimondii chloroplast |
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| 44 | NC_016670 | AAGG | 3 | 108385 | 108395 | 11 | Gossypium darwinii chloroplast |
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| 45 | NC_016677 | AAGG | 3 | 102557 | 102568 | 12 | Leersia tisserantii plastid |
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| 46 | NC_016690 | AAGG | 3 | 108423 | 108433 | 11 | Gossypium tomentosum chloroplast |
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| 47 | NC_016692 | AAGG | 3 | 108281 | 108291 | 11 | Gossypium herbaceum subsp. africanum chloroplast |
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| 48 | NC_016699 | AAGG | 3 | 104827 | 104838 | 12 | Phyllostachys propinqua chloroplast |
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| 49 | NC_016708 | AAGG | 3 | 102412 | 102422 | 11 | Millettia pinnata chloroplast |
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| 50 | NC_016711 | AAGG | 3 | 108306 | 108316 | 11 | Gossypium mustelinum chloroplast |
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| 51 | NC_016712 | AAGG | 3 | 108210 | 108220 | 11 | Gossypium arboreum chloroplast |
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| 52 | NC_016718 | AAGG | 3 | 102675 | 102686 | 12 | Rhynchoryza subulata plastid |
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| 53 | NC_016736 | AAGG | 3 | 109851 | 109861 | 11 | Ricinus communis chloroplast |
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| 54 | NC_016921 | AAGG | 3 | 104281 | 104291 | 11 | Pentactina rupicola chloroplast |
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| 55 | NC_016927 | AAGG | 3 | 101232 | 101243 | 12 | Oryza meridionalis chloroplast |
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| 56 | NC_017006 | AAGG | 3 | 80119 | 80129 | 11 | Mankyua chejuensis chloroplast |
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| 57 | NC_017835 | AAGG | 3 | 101220 | 101231 | 12 | Oryza rufipogon chloroplast |
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| 58 | NC_017894 | AAGG | 3 | 108284 | 108294 | 11 | Gossypium gossypioides chloroplast |
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| 59 | NC_018109 | AAGG | 3 | 107346 | 107356 | 11 | Gossypium incanum chloroplast |
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| 60 | NC_018110 | AAGG | 3 | 107628 | 107638 | 11 | Gossypium somalense chloroplast |
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| 61 | NC_018111 | AAGG | 3 | 107572 | 107582 | 11 | Gossypium capitis-viridis chloroplast |
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| 62 | NC_018112 | AAGG | 3 | 107660 | 107670 | 11 | Gossypium areysianum chloroplast |
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| 63 | NC_018113 | AAGG | 3 | 107961 | 107971 | 11 | Gossypium robinsonii chloroplast |
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| 64 | NC_018117 | AAGG | 3 | 47838 | 47848 | 11 | Datura stramonium chloroplast |
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| 65 | NC_018117 | AAGG | 3 | 104809 | 104819 | 11 | Datura stramonium chloroplast |
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| 66 | NC_018357 | AAGG | 3 | 107429 | 107439 | 11 | Magnolia denudata chloroplast |
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| 67 | NC_018552 | AAGG | 3 | 48288 | 48298 | 11 | Capsicum annuum chloroplast |
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| 68 | NC_018552 | AAGG | 3 | 106050 | 106060 | 11 | Capsicum annuum chloroplast |
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| 69 | NC_018766 | AAGG | 3 | 104674 | 104684 | 11 | Fragaria vesca subsp. bracteata chloroplast |
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| 70 | NC_018767 | AAGG | 3 | 104686 | 104696 | 11 | Fragaria mandshurica plastid |
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| 71 | NC_019601 | AAGG | 3 | 104578 | 104588 | 11 | Fragaria chiloensis chloroplast |
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| 72 | NC_019602 | AAGG | 3 | 104597 | 104607 | 11 | Fragaria virginiana chloroplast |
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| 73 | NC_019616 | AAGG | 3 | 112269 | 112279 | 11 | Vaccinium macrocarpon plastid |
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| 74 | NC_019648 | AAGG | 3 | 101065 | 101076 | 12 | Festuca altissima plastid |
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| 75 | NC_019649 | AAGG | 3 | 99368 | 99379 | 12 | Festuca ovina plastid |
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| 76 | NC_020019 | AAGG | 3 | 105729 | 105739 | 11 | Camellia sinensis chloroplast |
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| 77 | NC_020092 | AAGG | 3 | 101325 | 101335 | 11 | Chrysanthemum x morifolium chloroplast |
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| 78 | NC_020098 | AAGG | 3 | 103733 | 103743 | 11 | Tectona grandis chloroplast |
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| 79 | NC_020152 | AAGG | 3 | 109369 | 109379 | 11 | Quercus rubra plastid |
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| 80 | NC_020316 | AAGG | 3 | 107538 | 107548 | 11 | Magnolia officinalis chloroplast |
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| 81 | NC_020317 | AAGG | 3 | 107523 | 107533 | 11 | Magnolia officinalis subsp. biloba voucher SC001 chloroplast |
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| 82 | NC_020318 | AAGG | 3 | 107078 | 107088 | 11 | Magnolia grandiflora voucher NJ016 chloroplast |
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| 83 | NC_020320 | AAGG | 3 | 101281 | 101291 | 11 | Chrysanthemum indicum voucher HeN001 chloroplast |
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| 84 | NC_020341 | AAGG | 3 | 104230 | 104241 | 12 | Arundinaria gigantea chloroplast |
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| 85 | NC_020431 | AAGG | 3 | 101305 | 101315 | 11 | Salvia miltiorrhiza chloroplast |
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| 86 | NC_020607 | AAGG | 3 | 101301 | 101311 | 11 | Artemisia frigida chloroplast |
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| 87 | NC_021101 | AAGG | 3 | 105411 | 105421 | 11 | Francoa sonchifolia plastid |
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| 88 | NC_021109 | AAGG | 3 | 220841 | 220852 | 12 | Pleodorina starrii plastid |
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| 89 | NC_021111 | AAGG | 3 | 16442 | 16452 | 11 | Cistanche deserticola chloroplast |
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| 90 | NC_021111 | AAGG | 3 | 67655 | 67666 | 12 | Cistanche deserticola chloroplast |
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| 91 | NC_021121 | AAGG | 3 | 105146 | 105156 | 11 | Ardisia polysticta chloroplast |
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| 92 | NC_021372 | AAGG | 3 | 106134 | 106145 | 12 | Pharus latifolius chloroplast |
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| 93 | NC_021423 | AAGG | 3 | 104450 | 104460 | 11 | Catharanthus roseus cultivar Pacifica Punch Halo chloroplast |
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| 94 | NC_021425 | AAGG | 3 | 107652 | 107662 | 11 | Tetracentron sinense chloroplast |
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| 95 | NC_021426 | AAGG | 3 | 108793 | 108803 | 11 | Trochodendron aralioides chloroplast |
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| 96 | NC_021455 | AAGG | 3 | 104406 | 104416 | 11 | Prinsepia utilis plastid |
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| 97 | NC_021760 | AAGG | 3 | 103375 | 103386 | 12 | Triticum monococcum chloroplast |
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| 98 | NC_021762 | AAGG | 3 | 102750 | 102761 | 12 | Triticum urartu chloroplast |
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| 99 | NC_022133 | AAGG | 3 | 101092 | 101103 | 12 | Aegilops tauschii chloroplast |
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| 100 | NC_022135 | AAGG | 3 | 100498 | 100509 | 12 | Aegilops speltoides isolate SPE0661 chloroplast |
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| 101 | NC_001320 | AAGG | 3 | 101215 | 101226 | 12 | Oryza sativa Japonica Group plastid |
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| 102 | NC_001865 | AAGG | 3 | 125324 | 125336 | 13 | Chlorella vulgaris chloroplast |
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| 103 | NC_001879 | AAGG | 3 | 48428 | 48438 | 11 | Nicotiana tabacum plastid |
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| 104 | NC_001879 | AAGG | 3 | 105149 | 105159 | 11 | Nicotiana tabacum plastid |
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| 105 | NC_002693 | AAGG | 3 | 109933 | 109943 | 11 | Oenothera elata subsp. hookeri plastid plastome I |
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| 106 | NC_002694 | AAGG | 3 | 100635 | 100645 | 11 | Lotus japonicus chloroplast |
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| 107 | NC_002694 | AAGG | 3 | 105575 | 105587 | 13 | Lotus japonicus chloroplast |
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| 108 | NC_002762 | AAGG | 3 | 100831 | 100842 | 12 | Triticum aestivum chloroplast |
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| 109 | NC_003386 | AAGG | 3 | 87233 | 87244 | 12 | Psilotum nudum chloroplast |
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| 110 | NC_004543 | AAGG | 3 | 82522 | 82534 | 13 | Anthoceros formosae chloroplast |
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| 111 | NC_004561 | AAGG | 3 | 105466 | 105476 | 11 | Atropa belladonna chloroplast |
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| 112 | NC_004561 | AAGG | 3 | 108966 | 108977 | 12 | Atropa belladonna chloroplast |
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| 113 | NC_004766 | AAGG | 3 | 144876 | 144887 | 12 | Adiantum capillus-veneris chloroplast |
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| 114 | NC_004799 | AAGG | 3 | 91413 | 91423 | 11 | Cyanidioschyzon merolae strain 10D chloroplast |
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| 115 | NC_004799 | AAGG | 3 | 113620 | 113630 | 11 | Cyanidioschyzon merolae strain 10D chloroplast |
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| 116 | NC_004823 | AAGG | 3 | 34095 | 34105 | 11 | Eimeria tenella strain Penn State apicoplast |
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| 117 | NC_004993 | AAGG | 3 | 104032 | 104042 | 11 | Calycanthus floridus var. glaucus chloroplast |
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| 118 | NC_005086 | AAGG | 3 | 110278 | 110288 | 11 | Amborella trichopoda chloroplast |
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| 119 | NC_005973 | AAGG | 3 | 101170 | 101181 | 12 | Oryza nivara chloroplast |
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| 120 | NC_006050 | AAGG | 3 | 109203 | 109213 | 11 | Nymphaea alba chloroplast |
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| 121 | NC_006290 | AAGG | 3 | 104550 | 104560 | 11 | Panax ginseng chloroplast |
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| 122 | NC_007144 | AAGG | 3 | 104723 | 104733 | 11 | Cucumis sativus chloroplast |
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| 123 | NC_007500 | AAGG | 3 | 48426 | 48436 | 11 | Nicotiana sylvestris chloroplast |
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| 124 | NC_007500 | AAGG | 3 | 105147 | 105157 | 11 | Nicotiana sylvestris chloroplast |
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| 125 | NC_007578 | AAGG | 3 | 102816 | 102826 | 11 | Lactuca sativa chloroplast |
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| 126 | NC_007602 | AAGG | 3 | 48358 | 48368 | 11 | Nicotiana tomentosiformis chloroplast |
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| 127 | NC_007602 | AAGG | 3 | 104928 | 104938 | 11 | Nicotiana tomentosiformis chloroplast |
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| 128 | NC_007898 | AAGG | 3 | 47487 | 47497 | 11 | Solanum lycopersicum chloroplast |
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| 129 | NC_007898 | AAGG | 3 | 104379 | 104389 | 11 | Solanum lycopersicum chloroplast |
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| 130 | NC_007943 | AAGG | 3 | 47468 | 47478 | 11 | Solanum bulbocastanum chloroplast |
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| 131 | NC_007943 | AAGG | 3 | 104254 | 104264 | 11 | Solanum bulbocastanum chloroplast |
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| 132 | NC_007944 | AAGG | 3 | 108291 | 108301 | 11 | Gossypium hirsutum chloroplast |
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| 133 | NC_007957 | AAGG | 3 | 51009 | 51019 | 11 | Vitis vinifera chloroplast |
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| 134 | NC_007957 | AAGG | 3 | 108422 | 108432 | 11 | Vitis vinifera chloroplast |
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| 135 | NC_007977 | AAGG | 3 | 101677 | 101687 | 11 | Helianthus annuus chloroplast |
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| 136 | NC_008096 | AAGG | 3 | 47617 | 47627 | 11 | Solanum tuberosum chloroplast |
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| 137 | NC_008096 | AAGG | 3 | 104207 | 104217 | 11 | Solanum tuberosum chloroplast |
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| 138 | NC_008114 | AAGG | 3 | 35961 | 35971 | 11 | Pseudendoclonium akinetum chloroplast |
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| 139 | NC_008115 | AAGG | 3 | 108298 | 108308 | 11 | Eucalyptus globulus subsp. globulus chloroplast |
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| 140 | NC_008155 | AAGG | 3 | 101175 | 101186 | 12 | Oryza sativa Indica Group chloroplast |
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| 141 | NC_008235 | AAGG | 3 | 104519 | 104529 | 11 | Populus alba chloroplast |
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| 142 | NC_008325 | AAGG | 3 | 103674 | 103684 | 11 | Daucus carota chloroplast |
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| 143 | NC_008326 | AAGG | 3 | 107448 | 107458 | 11 | Liriodendron tulipifera chloroplast |
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| 144 | NC_008335 | AAGG | 3 | 110914 | 110924 | 11 | Platanus occidentalis chloroplast |
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| 145 | NC_008336 | AAGG | 3 | 104699 | 104709 | 11 | Nandina domestica chloroplast |
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| 146 | NC_008359 | AAGG | 3 | 106135 | 106145 | 11 | Morus indica chloroplast |
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| 147 | NC_008372 | AAGG | 3 | 13218 | 13228 | 11 | Stigeoclonium helveticum chloroplast |
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| 148 | NC_008454 | AAGG | 3 | 51869 | 51881 | 13 | Pelargonium x hortorum chloroplast |
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| 149 | NC_008454 | AAGG | 3 | 193177 | 193187 | 11 | Pelargonium x hortorum chloroplast |
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| 150 | NC_008457 | AAGG | 3 | 107249 | 107259 | 11 | Piper cenocladum chloroplast |
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| 151 | NC_008535 | AAGG | 3 | 103951 | 103961 | 11 | Coffea arabica chloroplast |
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| 152 | NC_008589 | AAGG | 3 | 96601 | 96611 | 11 | Thalassiosira pseudonana chloroplast |
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| 153 | NC_008590 | AAGG | 3 | 102487 | 102498 | 12 | Hordeum vulgare subsp. vulgare chloroplast |
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| 154 | NC_008591 | AAGG | 3 | 102541 | 102552 | 12 | Agrostis stolonifera chloroplast |
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| 155 | NC_008641 | AAGG | 3 | 108321 | 108331 | 11 | Gossypium barbadense chloroplast |
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| 156 | NC_008788 | AAGG | 3 | 109835 | 109845 | 11 | Nuphar advena chloroplast |
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| 157 | NC_008829 | AAGG | 3 | 104940 | 104950 | 11 | Angiopteris evecta chloroplast |
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| 158 | NC_009143 | AAGG | 3 | 105020 | 105030 | 11 | Populus trichocarpa chloroplast |
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| 159 | NC_009599 | AAGG | 3 | 107503 | 107513 | 11 | Buxus microphylla chloroplast |
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| 160 | NC_009600 | AAGG | 3 | 106728 | 106738 | 11 | Illicium oligandrum chloroplast |
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| 161 | NC_009618 | AAGG | 3 | 66851 | 66863 | 13 | Cycas taitungensis chloroplast |
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| 162 | NC_009766 | AAGG | 3 | 90721 | 90731 | 11 | Cuscuta reflexa chloroplast |
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| 163 | NC_009808 | AAGG | 3 | 104443 | 104453 | 11 | Ipomoea purpurea chloroplast |
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| 164 | NC_009962 | AAGG | 3 | 105425 | 105435 | 11 | Ceratophyllum demersum chloroplast |
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| 165 | NC_009963 | AAGG | 3 | 93918 | 93928 | 11 | Cuscuta exaltata chloroplast |
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| 166 | NC_010358 | AAGG | 3 | 109205 | 109215 | 11 | Oenothera argillicola chloroplast |
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| 167 | NC_010360 | AAGG | 3 | 109890 | 109900 | 11 | Oenothera glazioviana chloroplast |
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| 168 | NC_010361 | AAGG | 3 | 109358 | 109368 | 11 | Oenothera biennis chloroplast |
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| 169 | NC_010362 | AAGG | 3 | 108024 | 108034 | 11 | Oenothera parviflora chloroplast |
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| 170 | NC_010433 | AAGG | 3 | 108830 | 108840 | 11 | Manihot esculenta chloroplast |
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| 171 | NC_010442 | AAGG | 3 | 103576 | 103586 | 11 | Trachelium caeruleum chloroplast |
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| 172 | NC_010776 | AAGG | 3 | 62697 | 62708 | 12 | Fagopyrum esculentum subsp. ancestrale chloroplast |
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| 173 | NC_011032 | AAGG | 3 | 100766 | 100777 | 12 | Brachypodium distachyon chloroplast |
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| 174 | NC_011154 | AAGG | 3 | 36770 | 36781 | 12 | Pinus gerardiana chloroplast |
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| 175 | NC_011155 | AAGG | 3 | 36678 | 36689 | 12 | Pinus krempfii chloroplast |
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| 176 | NC_011158 | AAGG | 3 | 36370 | 36381 | 12 | Pinus monophylla chloroplast |
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| 177 | NC_011159 | AAGG | 3 | 36497 | 36508 | 12 | Pinus nelsonii chloroplast |
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| 178 | NC_011159 | AAGG | 3 | 70496 | 70507 | 12 | Pinus nelsonii chloroplast |
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| 179 | NC_011163 | AAGG | 3 | 99668 | 99679 | 12 | Cicer arietinum chloroplast |
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| 180 | NC_012224 | AAGG | 3 | 110678 | 110688 | 11 | Jatropha curcas chloroplast |
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| 181 | NC_012615 | AAGG | 3 | 107846 | 107856 | 11 | Megaleranthis saniculifolia chloroplast |
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| 182 | NC_012927 | AAGG | 3 | 104469 | 104480 | 12 | Bambusa oldhamii chloroplast |
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| 183 | NC_013088 | AAGG | 3 | 104555 | 104566 | 12 | Dendrocalamus latiflorus chloroplast |
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| 184 | NC_013553 | AAGG | 3 | 103200 | 103210 | 11 | Parthenium argentatum chloroplast |
|---|
| 185 | NC_014062 | AAGG | 3 | 104070 | 104081 | 12 | Anomochloa marantoidea chloroplast |
|---|
| 186 | NC_013707 | AAGG | 3 | 105257 | 105267 | 11 | Olea europaea chloroplast |
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