Chloroplast Motifs - Imperfect CCA Repeats
| S.No | Sequence ID | Motif | Iterations | Start | End | Tract Length | Sequence Name |
| 1 | NC_011087 | CCA | 7 | 409458 | 409477 | 20 | Paulinella chromatophora chromatophore |
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| 2 | NC_011087 | CCA | 7 | 901459 | 901479 | 21 | Paulinella chromatophora chromatophore |
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| 3 | NC_011087 | CCA | 5 | 901513 | 901527 | 15 | Paulinella chromatophora chromatophore |
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| 4 | NC_015543 | CCA | 5 | 122237 | 122250 | 14 | Jacobaea vulgaris chloroplast |
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| 5 | NC_012097 | CCA | 5 | 9339 | 9353 | 15 | Pycnococcus provasolii chloroplast |
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| 6 | NC_011087 | CCA | 4 | 901423 | 901434 | 12 | Paulinella chromatophora chromatophore |
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| 7 | NC_015084 | CCA | 4 | 76360 | 76371 | 12 | Coccomyxa sp. C-169 plastid |
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| 8 | NC_016703 | CCA | 4 | 56051 | 56062 | 12 | Phaeocystis antarctica strain CCMP1374 plastid |
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| 9 | NC_017006 | CCA | 4 | 121311 | 121322 | 12 | Mankyua chejuensis chloroplast |
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| 10 | NC_018569 | CCA | 4 | 7656 | 7666 | 11 | Trebouxiophyceae sp. MX-AZ01 chloroplast |
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| 11 | NC_018569 | CCA | 4 | 92530 | 92541 | 12 | Trebouxiophyceae sp. MX-AZ01 chloroplast |
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| 12 | NC_019628 | CCA | 4 | 46268 | 46278 | 11 | Pellia endiviifolia chloroplast |
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| 13 | NC_020146 | CCA | 4 | 105384 | 105394 | 11 | Equisetum hyemale chloroplast |
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| 14 | NC_020795 | CCA | 4 | 42666 | 42677 | 12 | Chondrus crispus plastid complete genome |
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| 15 | NC_020795 | CCA | 4 | 56868 | 56879 | 12 | Chondrus crispus plastid complete genome |
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| 16 | NC_021189 | CCA | 4 | 129567 | 129578 | 12 | Pyropia haitanensis voucher PH-38 chloroplast |
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| 17 | NC_021372 | CCA | 4 | 20130 | 20141 | 12 | Pharus latifolius chloroplast |
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| 18 | NC_021637 | CCA | 4 | 57311 | 57322 | 12 | Phaeocystis globosa strain Pg-G(A) chloroplast |
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| 19 | NC_022136 | CCA | 4 | 41150 | 41160 | 11 | Lygodium japonicum chloroplast |
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| 20 | NC_001840 | CCA | 4 | 136267 | 136277 | 11 | Cyanidium caldarium chloroplast |
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| 21 | NC_002693 | CCA | 4 | 159243 | 159253 | 11 | Oenothera elata subsp. hookeri plastid plastome I |
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| 22 | NC_007932 | CCA | 4 | 139387 | 139397 | 11 | Porphyra yezoensis chloroplast |
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| 23 | NC_008099 | CCA | 4 | 124081 | 124091 | 11 | Oltmannsiellopsis viridis chloroplast |
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| 24 | NC_008589 | CCA | 4 | 47953 | 47964 | 12 | Thalassiosira pseudonana chloroplast |
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| 25 | NC_008591 | CCA | 4 | 18463 | 18474 | 12 | Agrostis stolonifera chloroplast |
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| 26 | NC_009573 | CCA | 4 | 15996 | 16006 | 11 | Rhodomonas salina chloroplast |
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| 27 | NC_010360 | CCA | 4 | 158708 | 158718 | 11 | Oenothera glazioviana chloroplast |
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| 28 | NC_010361 | CCA | 4 | 158438 | 158448 | 11 | Oenothera biennis chloroplast |
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| 29 | NC_010362 | CCA | 4 | 156980 | 156990 | 11 | Oenothera parviflora chloroplast |
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| 30 | NC_011600 | CCA | 4 | 88606 | 88616 | 11 | Vaucheria litorea chloroplast |
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| 31 | NC_012099 | CCA | 4 | 1613 | 1624 | 12 | Pyramimonas parkeae chloroplast |
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| 32 | NC_012818 | CCA | 4 | 139372 | 139383 | 12 | Alsophila spinulosa chloroplast |
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| 33 | NC_013086 | CCA | 4 | 27393 | 27404 | 12 | Selaginella moellendorffii plastid |
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