ChloroMitoSSRDB 2.0 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

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Chloroplast Motifs - Imperfect TAAG Repeats

S.NoSequence IDMotifIterationsStartEndTract LengthSequence Name
1NC_008117TAAG9903839041836 Zygnema circumcarinatum chloroplast
2NC_008117TAAG613485413487724 Zygnema circumcarinatum chloroplast
3NC_015894TAAG4732657327915Wolffiella lingulata chloroplast
4NC_008117TAAG4327133272715 Zygnema circumcarinatum chloroplast
5NC_011087TAAG314793414794512Paulinella chromatophora chromatophore
6NC_011087TAAG331526231527211Paulinella chromatophora chromatophore
7NC_011087TAAG363203463204512Paulinella chromatophora chromatophore
8NC_011087TAAG31008058100806811Paulinella chromatophora chromatophore
9NC_014340TAAG3403944040512Chromera velia strain CCMP2878 chloroplast
10NC_014348TAAG310776010777011Pteridium aquilinum subsp. aquilinum chloroplast
11NC_014570TAAG3465854659612Eucalyptus grandis chloroplast
12NC_014570TAAG311222811223811Eucalyptus grandis chloroplast
13NC_014573TAAG3918469185611Geranium palmatum plastid
14NC_014674TAAG311311511312511Castanea mollissima chloroplast
15NC_014676TAAG311293711294711Theobroma cacao chloroplast
16NC_014697TAAG310928410929411Prunus persica chloroplast
17NC_014807TAAG311156011157011Corynocarpus laevigata chloroplast
18NC_015083TAAG3432704328011Erodium carvifolium chloroplast
19NC_015113TAAG310735010736011Anthriscus cerefolium chloroplast
20NC_015139TAAG310654110655111Brassica rapa subsp. pekinensis chloroplast
21NC_015204TAAG311232011233011Gossypium thurberi chloroplast
22NC_015206TAAG310869110870111Fragaria vesca subsp. vesca chloroplast
23NC_015308TAAG311282211283211Hevea brasiliensis chloroplast
24NC_015401TAAG310932510933511Olea europaea subsp. europaea plastid
25NC_015543TAAG310526910527911Jacobaea vulgaris chloroplast
26NC_015604TAAG310933310934311Olea europaea subsp. cuspidata chloroplast
27NC_015605TAAG3352023521312Nelumbo lutea chloroplast
28NC_015605TAAG311501111502111Nelumbo lutea chloroplast
29NC_015608TAAG310941710942711Olea woodiana subsp. woodiana chloroplast
30NC_015610TAAG3351913520212Nelumbo nucifera chloroplast
31NC_015610TAAG311511011512011Nelumbo nucifera chloroplast
32NC_015621TAAG310672210673211Ageratina adenophora chloroplast
33NC_015623TAAG310934410935411Olea europaea subsp. maroccana chloroplast
34NC_015891TAAG311463311464311Spirodela polyrhiza chloroplast
35NC_015892TAAG311133711134711Magnolia kwangsiensis chloroplast
36NC_015894TAAG311529011530011Wolffiella lingulata chloroplast
37NC_015899TAAG311489611490611Wolffia australiana chloroplast
38NC_015899TAAG313130113131111Wolffia australiana chloroplast
39NC_015983TAAG310897010898011Cucumis melo subsp. melo chloroplast
40NC_015996TAAG311117311118311Pyrus pyrifolia chloroplast
41NC_016063TAAG34129413911Cephalotaxus wilsoniana chloroplast DNA
42NC_016065TAAG311447011448011Taiwania cryptomerioides chloroplast DNA
43NC_016068TAAG310904510905511Nicotiana undulata chloroplast
44NC_016430TAAG310929110930111Eleutherococcus senticosus chloroplast
45NC_016433TAAG310740210741211Sesamum indicum chloroplast
46NC_016468TAAG310743310744311Boea hygrometrica chloroplast
47NC_016668TAAG311226611227611Gossypium raimondii chloroplast
48NC_016670TAAG311245811246811Gossypium darwinii chloroplast
49NC_016690TAAG311249611250611Gossypium tomentosum chloroplast
50NC_016692TAAG311235411236411Gossypium herbaceum subsp. africanum chloroplast
51NC_016708TAAG310647710648711Millettia pinnata chloroplast
52NC_016711TAAG311237911238911Gossypium mustelinum chloroplast
53NC_016712TAAG311228311229311Gossypium arboreum chloroplast
54NC_016727TAAG36845685612Silene vulgaris chloroplast
55NC_016727TAAG310435510436511Silene vulgaris chloroplast
56NC_016728TAAG3997419975111Silene noctiflora chloroplast
57NC_016729TAAG3998429985211Silene conica chloroplast
58NC_016730TAAG310480010481011Silene latifolia chloroplast
59NC_016732TAAG3468264683712Dunaliella salina chloroplast
60NC_016733TAAG3562955630612Pedinomonas minor chloroplast
61NC_016734TAAG310616410617411Brassica napus chloroplast
62NC_016736TAAG311389811390811Ricinus communis chloroplast
63NC_016753TAAG311331511332511Colocasia esculenta chloroplast
64NC_016921TAAG310834610835611Pentactina rupicola chloroplast
65NC_017602TAAG310904110905111Elaeis guineensis chloroplast
66NC_017609TAAG310995310996311Phalaenopsis equestris chloroplast
67NC_017894TAAG311234511235511Gossypium gossypioides chloroplast
68NC_018109TAAG311140211141211Gossypium incanum chloroplast
69NC_018110TAAG311168411169411Gossypium somalense chloroplast
70NC_018111TAAG311163311164311Gossypium capitis-viridis chloroplast
71NC_018112TAAG311171611172611Gossypium areysianum chloroplast
72NC_018113TAAG311202211203211Gossypium robinsonii chloroplast
73NC_018114TAAG310592110593111Erycina pusilla chloroplast
74NC_018117TAAG310886710887711Datura stramonium chloroplast
75NC_018357TAAG311147511148511Magnolia denudata chloroplast
76NC_018541TAAG310858910859911Elodea canadensis chloroplast
77NC_018552TAAG311012111013111Capsicum annuum chloroplast
78NC_018565TAAG310741510742511Pachycladon enysii chloroplast
79NC_018766TAAG310874110875111Fragaria vesca subsp. bracteata chloroplast
80NC_018767TAAG310875310876311Fragaria mandshurica plastid
81NC_019601TAAG310864510865511Fragaria chiloensis chloroplast
82NC_019602TAAG310866410867411Fragaria virginiana chloroplast
83NC_019616TAAG311634411635411Vaccinium macrocarpon plastid
84NC_020019TAAG310978610979611Camellia sinensis chloroplast
85NC_020092TAAG310538310539311Chrysanthemum x morifolium chloroplast
86NC_020098TAAG310780710781711Tectona grandis chloroplast
87NC_020152TAAG311341611342611Quercus rubra plastid
88NC_020316TAAG311158511159511Magnolia officinalis chloroplast
89NC_020317TAAG311153111154111Magnolia officinalis subsp. biloba voucher SC001 chloroplast
90NC_020318TAAG311112311113311Magnolia grandiflora voucher NJ016 chloroplast
91NC_020320TAAG310533910534911Chrysanthemum indicum voucher HeN001 chloroplast
92NC_020364TAAG310976310977311Pseudophoenix vinifera plastid
93NC_020365TAAG310938410939411Calamus caryotoides plastid
94NC_020366TAAG311041711042711Bismarckia nobilis plastid
95NC_020367TAAG311029311030311Dasypogon bromeliifolius plastid
96NC_020371TAAG3116301164213Pavlova lutheri chloroplast
97NC_020431TAAG310536010537011Salvia miltiorrhiza chloroplast
98NC_020438TAAG3626076261711Gonium pectorale chloroplast
99NC_020607TAAG310535910536911Artemisia frigida chloroplast
100NC_021075TAAG3902929030413Calliarthron tuberculosum chloroplast
101NC_021101TAAG310949910950911Francoa sonchifolia plastid
102NC_021102TAAG310706810707811Pachycladon cheesemanii chloroplast
103NC_021110TAAG34037404711Cephalotaxus oliveri chloroplast
104NC_021111TAAG3205342054411Cistanche deserticola chloroplast
105NC_021121TAAG310921210922211Ardisia polysticta chloroplast
106NC_021189TAAG314491514492511Pyropia haitanensis voucher PH-38 chloroplast
107NC_021372TAAG3124341244411Pharus latifolius chloroplast
108NC_021423TAAG310853910854911Catharanthus roseus cultivar Pacifica Punch Halo chloroplast
109NC_021425TAAG311171211172211Tetracentron sinense chloroplast
110NC_021426TAAG311285011286011Trochodendron aralioides chloroplast
111NC_021429TAAG310951210952211Cymbidium aloifolium voucher KUN:YJB100604 chloroplast
112NC_021430TAAG310880710881711Cymbidium sinense voucher KUN:YJB100605 chloroplast
113NC_021431TAAG310885510886511Cymbidium tortisepalum voucher KUN:HJL091027 chloroplast
114NC_021432TAAG310885710886711Cymbidium tracyanum voucher KUN:YJB100606 chloroplast
115NC_021433TAAG310870410871411Cymbidium mannii voucher KUN:YJB100602 chloroplast
116NC_021441TAAG311331511332511Taiwania flousiana chloroplast
117NC_021449TAAG310420110421111Utricularia gibba chloroplast
118NC_021455TAAG310847410848411Prinsepia utilis plastid
119NC_021618TAAG311839211840312Grateloupia taiwanensis plastid
120NC_021637TAAG3903859039612Phaeocystis globosa strain Pg-G(A) chloroplast
121NC_021936TAAG3361523616211Najas flexilis chloroplast
122NC_021936TAAG311194211195211Najas flexilis chloroplast
123NC_000932TAAG310746510747511 Arabidopsis thaliana chloroplast
124NC_001568TAAG3399113992111 Epifagus virginiana chloroplast
125NC_001675TAAG3740867409611 Cyanophora paradoxa cyanelle
126NC_001879TAAG310910510911511 Nicotiana tabacum plastid
127NC_002202TAAG310442810443811 Spinacia oleracea plastid
128NC_002693TAAG311400211401211 Oenothera elata subsp. hookeri plastid plastome I
129NC_002694TAAG310470210471211 Lotus japonicus chloroplast
130NC_004561TAAG310939610940611 Atropa belladonna chloroplast
131NC_004799TAAG3150211503212 Cyanidioschyzon merolae strain 10D chloroplast
132NC_004993TAAG310807010808011 Calycanthus floridus var. glaucus chloroplast
133NC_005086TAAG311433011434011 Amborella trichopoda chloroplast
134NC_005353TAAG312640812641811 Chlamydomonas reinhardtii chloroplast
135NC_005353TAAG314955214956413 Chlamydomonas reinhardtii chloroplast
136NC_006050TAAG311314111315111 Nymphaea alba chloroplast
137NC_006290TAAG310860310861311 Panax ginseng chloroplast
138NC_007144TAAG310878010879011 Cucumis sativus chloroplast
139NC_007407TAAG310652410653411 Acorus calamus plastid
140NC_007499TAAG310983010984011 Phalaenopsis aphrodite subsp. formosana chloroplast
141NC_007500TAAG310910310911311 Nicotiana sylvestris chloroplast
142NC_007578TAAG310687610688611 Lactuca sativa chloroplast
143NC_007602TAAG310888410889411 Nicotiana tomentosiformis chloroplast
144NC_007898TAAG310843710844711 Solanum lycopersicum chloroplast
145NC_007932TAAG311679111680212 Porphyra yezoensis chloroplast
146NC_007932TAAG314309214310211 Porphyra yezoensis chloroplast
147NC_007932TAAG318523818524912 Porphyra yezoensis chloroplast
148NC_007943TAAG310831210832211 Solanum bulbocastanum chloroplast
149NC_007944TAAG311236811237811 Gossypium hirsutum chloroplast
150NC_007957TAAG311247711248711 Vitis vinifera chloroplast
151NC_007977TAAG310574410575411 Helianthus annuus chloroplast
152NC_008096TAAG310826510827511 Solanum tuberosum chloroplast
153NC_008115TAAG3467304674112 Eucalyptus globulus subsp. globulus chloroplast
154NC_008115TAAG311235611236611 Eucalyptus globulus subsp. globulus chloroplast
155NC_008235TAAG310856610857611 Populus alba chloroplast
156NC_008325TAAG310770810771811 Daucus carota chloroplast
157NC_008326TAAG311149411150411 Liriodendron tulipifera chloroplast
158NC_008334TAAG311175411176411 Citrus sinensis chloroplast
159NC_008335TAAG311496011497011 Platanus occidentalis chloroplast
160NC_008336TAAG310873910874911 Nandina domestica chloroplast
161NC_008359TAAG311019011020011 Morus indica chloroplast
162NC_008407TAAG311447311448311 Jasminum nudiflorum chloroplast
163NC_008454TAAG319737219738211 Pelargonium x hortorum chloroplast
164NC_008456TAAG311231611232611 Drimys granadensis chloroplast
165NC_008457TAAG311131811132811 Piper cenocladum chloroplast
166NC_008457TAAG311618911619911 Piper cenocladum chloroplast
167NC_008535TAAG310801410802411 Coffea arabica chloroplast
168NC_008641TAAG311239211240211 Gossypium barbadense chloroplast
169NC_008788TAAG311388811389811 Nuphar advena chloroplast
170NC_008796TAAG310766410767411 Ranunculus macranthus chloroplast
171NC_009143TAAG310907210908211 Populus trichocarpa chloroplast
172NC_009265TAAG310694910695911 Aethionema cordifolium chloroplast
173NC_009266TAAG310699410700411 Aethionema grandiflorum chloroplast
174NC_009267TAAG310739410740411 Olimarabidopsis pumila chloroplast
175NC_009268TAAG310626610627611 Arabis hirsuta chloroplast
176NC_009269TAAG3268052681612 Barbarea verna chloroplast
177NC_009269TAAG310694410695411 Barbarea verna chloroplast
178NC_009270TAAG310722410723411 Capsella bursa-pastoris chloroplast
179NC_009271TAAG310763410764411 Crucihimalaya wallichii chloroplast
180NC_009272TAAG310584810585811 Draba nemorosa chloroplast
181NC_009273TAAG310751010752011 Lepidium virginicum chloroplast
182NC_009274TAAG3260112602212 Lobularia maritima chloroplast
183NC_009274TAAG310572610573611 Lobularia maritima chloroplast
184NC_009275TAAG310779410780411 Nasturtium officinale chloroplast
185NC_009598TAAG310997610998611 Chloranthus spicatus chloroplast
186NC_009599TAAG311155711156711 Buxus microphylla chloroplast
187NC_009600TAAG311079011080011 Illicium oligandrum chloroplast
188NC_009601TAAG310602910603911 Dioscorea elephantipes chloroplast
189NC_009765TAAG3636966370611 Cuscuta gronovii chloroplast
190NC_009766TAAG3947399474911 Cuscuta reflexa chloroplast
191NC_009808TAAG310850310851311 Ipomoea purpurea chloroplast
192NC_009949TAAG3627076271711 Cuscuta obtusiflora chloroplast
193NC_009962TAAG310949410950411 Ceratophyllum demersum chloroplast
194NC_009963TAAG3979369794611 Cuscuta exaltata chloroplast
195NC_010093TAAG310620010621011 Acorus americanus chloroplast
196NC_010109TAAG311263511264511 Lemna minor chloroplast
197NC_010323TAAG311220911221911 Carica papaya chloroplast
198NC_010358TAAG311327411328411 Oenothera argillicola chloroplast
199NC_010360TAAG311395911396911 Oenothera glazioviana chloroplast
200NC_010361TAAG311342711343711 Oenothera biennis chloroplast
201NC_010362TAAG311209311210311 Oenothera parviflora chloroplast
202NC_010433TAAG311292311293311 Manihot esculenta chloroplast
203NC_010442TAAG310774610775611 Trachelium caeruleum chloroplast
204NC_010601TAAG310616310617311 Guizotia abyssinica chloroplast
205NC_010776TAAG310766710767711 Fagopyrum esculentum subsp. ancestrale chloroplast
206NC_011163TAAG310375010376011 Cicer arietinum chloroplast
207NC_011600TAAG3666906670112 Vaucheria litorea chloroplast
208NC_011930TAAG3330973310711 Keteleeria davidiana chloroplast
209NC_011954TAAG32011202111 Ephedra equisetina chloroplast
210NC_012101TAAG3826618267212 Monomastix sp. OKE-1 chloroplast
211NC_012575TAAG3134891350012 Micromonas sp. RCC299 chloroplast
212NC_012615TAAG311189311190311 Megaleranthis saniculifolia chloroplast
213NC_012978TAAG311116811117811 Parachlorella kessleri chloroplast
214NC_013553TAAG310726710727711 Parthenium argentatum chloroplast
215NC_013823TAAG311310411311411 Typha latifolia chloroplast
216NC_013991TAAG311023611024611 Phoenix dactylifera chloroplast
217NC_014056TAAG310605210606211 Oncidium Gower Ramsey chloroplast
218NC_014062TAAG313781913783012 Anomochloa marantoidea chloroplast
219NC_013707TAAG310931110932111 Olea europaea chloroplast