ChloroMitoSSRDB 2.0 - Database of Microsatellites from Chloroplast & Mitochondrial Genomes

Chloroplast Motifs - Imperfect TGA Repeats

S.No	Sequence ID	Motif	Iterations	Start	End	Tract Length	Sequence Name
1	NC_008407	TGA	8	118519	118542	24	Jasminum nudiflorum chloroplast
2	NC_017602	TGA	6	70800	70818	19	Elaeis guineensis chloroplast
3	NC_017609	TGA	6	70987	71005	19	Phalaenopsis equestris chloroplast
4	NC_020362	TGA	6	75394	75412	19	Heliconia collinsiana plastid
5	NC_020364	TGA	6	71562	71580	19	Pseudophoenix vinifera plastid
6	NC_020366	TGA	6	72118	72136	19	Bismarckia nobilis plastid
7	NC_020367	TGA	6	71811	71829	19	Dasypogon bromeliifolius plastid
8	NC_007499	TGA	6	70963	70981	19	Phalaenopsis aphrodite subsp. formosana chloroplast
9	NC_007407	TGA	5	145658	145671	14	Acorus calamus plastid
10	NC_010093	TGA	5	145328	145341	14	Acorus americanus chloroplast
11	NC_011087	TGA	4	116805	116816	12	Paulinella chromatophora chromatophore
12	NC_011087	TGA	4	610565	610576	12	Paulinella chromatophora chromatophore
13	NC_011087	TGA	4	791430	791440	11	Paulinella chromatophora chromatophore
14	NC_011087	TGA	4	845207	845218	12	Paulinella chromatophora chromatophore
15	NC_014267	TGA	4	56748	56759	12	Kryptoperidinium foliaceum chloroplast
16	NC_014267	TGA	4	101536	101546	11	Kryptoperidinium foliaceum chloroplast
17	NC_014287	TGA	4	883	894	12	Durinskia baltica chloroplast
18	NC_014346	TGA	4	226135	226146	12	Floydiella terrestris chloroplast
19	NC_014346	TGA	4	368242	368253	12	Floydiella terrestris chloroplast
20	NC_014346	TGA	4	444950	444960	11	Floydiella terrestris chloroplast
21	NC_014570	TGA	4	81572	81583	12	Eucalyptus grandis chloroplast
22	NC_014874	TGA	4	32524	32535	12	Rhizanthella gardneri plastid
23	NC_015084	TGA	4	149556	149567	12	Coccomyxa sp. C-169 plastid
24	NC_015113	TGA	4	91023	91034	12	Anthriscus cerefolium chloroplast
25	NC_015206	TGA	4	53573	53583	11	Fragaria vesca subsp. vesca chloroplast
26	NC_015359	TGA	4	36219	36229	11	Chlorella variabilis plastid
27	NC_015359	TGA	4	120158	120169	12	Chlorella variabilis plastid
28	NC_015401	TGA	4	93288	93299	12	Olea europaea subsp. europaea plastid
29	NC_015403	TGA	4	97159	97170	12	Fistulifera sp. JPCC DA0580 chloroplast
30	NC_015403	TGA	4	99962	99973	12	Fistulifera sp. JPCC DA0580 chloroplast
31	NC_015604	TGA	4	93296	93307	12	Olea europaea subsp. cuspidata chloroplast
32	NC_015605	TGA	4	98503	98514	12	Nelumbo lutea chloroplast
33	NC_015608	TGA	4	93393	93404	12	Olea woodiana subsp. woodiana chloroplast
34	NC_015610	TGA	4	98590	98601	12	Nelumbo nucifera chloroplast
35	NC_015623	TGA	4	93307	93318	12	Olea europaea subsp. maroccana chloroplast
36	NC_015891	TGA	4	97855	97866	12	Spirodela polyrhiza chloroplast
37	NC_015892	TGA	4	94706	94717	12	Magnolia kwangsiensis chloroplast
38	NC_015894	TGA	4	98739	98750	12	Wolffiella lingulata chloroplast
39	NC_015899	TGA	4	98178	98189	12	Wolffia australiana chloroplast
40	NC_015983	TGA	4	76941	76952	12	Cucumis melo subsp. melo chloroplast
41	NC_016068	TGA	4	93335	93346	12	Nicotiana undulata chloroplast
42	NC_016430	TGA	4	92969	92980	12	Eleutherococcus senticosus chloroplast
43	NC_016433	TGA	4	91310	91321	12	Sesamum indicum chloroplast
44	NC_016468	TGA	4	42628	42638	11	Boea hygrometrica chloroplast
45	NC_016468	TGA	4	91426	91437	12	Boea hygrometrica chloroplast
46	NC_016471	TGA	4	44783	44794	12	Neottia nidus-avis plastid
47	NC_016753	TGA	4	75088	75099	12	Colocasia esculenta chloroplast
48	NC_016753	TGA	4	96393	96404	12	Colocasia esculenta chloroplast
49	NC_016986	TGA	4	49886	49896	11	Ginkgo biloba chloroplast
50	NC_017602	TGA	4	92452	92463	12	Elaeis guineensis chloroplast
51	NC_017609	TGA	4	93408	93419	12	Phalaenopsis equestris chloroplast
52	NC_017754	TGA	4	21562	21572	11	Eutreptiella gymnastica plastid
53	NC_018114	TGA	4	90891	90902	12	Erycina pusilla chloroplast
54	NC_018114	TGA	4	91377	91390	14	Erycina pusilla chloroplast
55	NC_018117	TGA	4	93050	93061	12	Datura stramonium chloroplast
56	NC_018357	TGA	4	94804	94815	12	Magnolia denudata chloroplast
57	NC_018523	TGA	4	126584	126595	12	Saccharina japonica chloroplast
58	NC_018541	TGA	4	31641	31652	12	Elodea canadensis chloroplast
59	NC_020014	TGA	4	18871	18882	12	Nannochloropsis gaditana chloroplast
60	NC_020019	TGA	4	93419	93430	12	Camellia sinensis chloroplast
61	NC_020092	TGA	4	41715	41726	12	Chrysanthemum x morifolium chloroplast
62	NC_020098	TGA	4	92039	92050	12	Tectona grandis chloroplast
63	NC_020146	TGA	4	41035	41045	11	Equisetum hyemale chloroplast
64	NC_020147	TGA	4	24509	24520	12	Ophioglossum californicum chloroplast
65	NC_020316	TGA	4	94913	94924	12	Magnolia officinalis chloroplast
66	NC_020317	TGA	4	94889	94900	12	Magnolia officinalis subsp. biloba voucher SC001 chloroplast
67	NC_020318	TGA	4	94449	94460	12	Magnolia grandiflora voucher NJ016 chloroplast
68	NC_020320	TGA	4	41740	41751	12	Chrysanthemum indicum voucher HeN001 chloroplast
69	NC_020362	TGA	4	96877	96888	12	Heliconia collinsiana plastid
70	NC_020363	TGA	4	92749	92760	12	Zingiber spectabile plastid
71	NC_020364	TGA	4	92979	92990	12	Pseudophoenix vinifera plastid
72	NC_020365	TGA	4	92824	92835	12	Calamus caryotoides plastid
73	NC_020366	TGA	4	93692	93703	12	Bismarckia nobilis plastid
74	NC_020367	TGA	4	93509	93520	12	Dasypogon bromeliifolius plastid
75	NC_020367	TGA	4	120263	120274	12	Dasypogon bromeliifolius plastid
76	NC_020431	TGA	4	89404	89415	12	Salvia miltiorrhiza chloroplast
77	NC_020607	TGA	4	41720	41731	12	Artemisia frigida chloroplast
78	NC_020795	TGA	4	19091	19101	11	Chondrus crispus plastid complete genome
79	NC_020795	TGA	4	44055	44065	11	Chondrus crispus plastid complete genome
80	NC_021075	TGA	4	47140	47150	11	Calliarthron tuberculosum chloroplast
81	NC_021111	TGA	4	7078	7089	12	Cistanche deserticola chloroplast
82	NC_021121	TGA	4	31160	31170	11	Ardisia polysticta chloroplast
83	NC_021121	TGA	4	92841	92852	12	Ardisia polysticta chloroplast
84	NC_021189	TGA	4	6707	6718	12	Pyropia haitanensis voucher PH-38 chloroplast
85	NC_021425	TGA	4	95277	95288	12	Tetracentron sinense chloroplast
86	NC_021426	TGA	4	96415	96426	12	Trochodendron aralioides chloroplast
87	NC_021429	TGA	4	92985	92996	12	Cymbidium aloifolium voucher KUN:YJB100604 chloroplast
88	NC_021430	TGA	4	92261	92272	12	Cymbidium sinense voucher KUN:YJB100605 chloroplast
89	NC_021431	TGA	4	92308	92319	12	Cymbidium tortisepalum voucher KUN:HJL091027 chloroplast
90	NC_021432	TGA	4	92265	92276	12	Cymbidium tracyanum voucher KUN:YJB100606 chloroplast
91	NC_021433	TGA	4	92566	92577	12	Cymbidium mannii voucher KUN:YJB100602 chloroplast
92	NC_021437	TGA	4	68179	68190	12	Cunninghamia lanceolata chloroplast
93	NC_021449	TGA	4	88429	88440	12	Utricularia gibba chloroplast
94	NC_021618	TGA	4	182759	182769	11	Grateloupia taiwanensis plastid
95	NC_021637	TGA	4	37717	37728	12	Phaeocystis globosa strain Pg-G(A) chloroplast
96	NC_021936	TGA	4	21859	21871	13	Najas flexilis chloroplast
97	NC_022099	TGA	4	56266	56277	12	Medicago truncatula cultivar Jemalong 2HA plastid
98	NC_022100	TGA	4	56310	56321	12	Medicago truncatula cultivar Borung plastid
99	NC_000925	TGA	4	6689	6700	12	Porphyra purpurea chloroplast
100	NC_000925	TGA	4	175601	175611	11	Porphyra purpurea chloroplast
101	NC_000926	TGA	4	112703	112714	12	Guillardia theta chloroplast
102	NC_000927	TGA	4	75360	75371	12	Nephroselmis olivacea chloroplast
103	NC_000927	TGA	4	109095	109105	11	Nephroselmis olivacea chloroplast
104	NC_001568	TGA	4	26379	26390	12	Epifagus virginiana chloroplast
105	NC_001713	TGA	4	82549	82560	12	Odontella sinensis chloroplast
106	NC_001865	TGA	4	59231	59241	11	Chlorella vulgaris chloroplast
107	NC_001879	TGA	4	93411	93422	12	Nicotiana tabacum plastid
108	NC_002202	TGA	4	88445	88456	12	Spinacia oleracea plastid
109	NC_002694	TGA	4	35292	35302	11	Lotus japonicus chloroplast
110	NC_003119	TGA	4	56266	56277	12	Medicago truncatula chloroplast
111	NC_003386	TGA	4	4944	4954	11	Psilotum nudum chloroplast
112	NC_003386	TGA	4	124195	124207	13	Psilotum nudum chloroplast
113	NC_004799	TGA	4	77359	77370	12	Cyanidioschyzon merolae strain 10D chloroplast
114	NC_004799	TGA	4	95423	95434	12	Cyanidioschyzon merolae strain 10D chloroplast
115	NC_004993	TGA	4	92079	92090	12	Calycanthus floridus var. glaucus chloroplast
116	NC_004993	TGA	4	116447	116459	13	Calycanthus floridus var. glaucus chloroplast
117	NC_005086	TGA	4	97630	97641	12	Amborella trichopoda chloroplast
118	NC_006050	TGA	4	75613	75624	12	Nymphaea alba chloroplast
119	NC_006050	TGA	4	96610	96621	12	Nymphaea alba chloroplast
120	NC_006050	TGA	4	97138	97149	12	Nymphaea alba chloroplast
121	NC_006050	TGA	4	145724	145735	12	Nymphaea alba chloroplast
122	NC_006290	TGA	4	92282	92293	12	Panax ginseng chloroplast
123	NC_007288	TGA	4	31712	31722	11	Emiliania huxleyi chloroplast
124	NC_007288	TGA	4	70863	70874	12	Emiliania huxleyi chloroplast
125	NC_007407	TGA	4	27673	27684	12	Acorus calamus plastid
126	NC_007407	TGA	4	53722	53732	11	Acorus calamus plastid
127	NC_007499	TGA	4	76163	76175	13	Phalaenopsis aphrodite subsp. formosana chloroplast
128	NC_007499	TGA	4	93396	93407	12	Phalaenopsis aphrodite subsp. formosana chloroplast
129	NC_007500	TGA	4	93409	93420	12	Nicotiana sylvestris chloroplast
130	NC_007602	TGA	4	93178	93189	12	Nicotiana tomentosiformis chloroplast
131	NC_007758	TGA	4	14781	14792	12	Theileria parva strain Muguga apicoplast
132	NC_007898	TGA	4	92725	92736	12	Solanum lycopersicum chloroplast
133	NC_007943	TGA	4	92568	92579	12	Solanum bulbocastanum chloroplast
134	NC_007957	TGA	4	95931	95942	12	Vitis vinifera chloroplast
135	NC_008096	TGA	4	92521	92532	12	Solanum tuberosum chloroplast
136	NC_008097	TGA	4	13184	13194	11	Chara vulgaris chloroplast
137	NC_008115	TGA	4	81694	81705	12	Eucalyptus globulus subsp. globulus chloroplast
138	NC_008289	TGA	4	10274	10284	11	Ostreococcus tauri chloroplast
139	NC_008325	TGA	4	90419	90430	12	Daucus carota chloroplast
140	NC_008326	TGA	4	94835	94846	12	Liriodendron tulipifera chloroplast
141	NC_008335	TGA	4	98935	98946	12	Platanus occidentalis chloroplast
142	NC_008336	TGA	4	92256	92267	12	Nandina domestica chloroplast
143	NC_008408	TGA	4	13683	13694	12	Bigelowiella natans plastid
144	NC_008408	TGA	4	13815	13825	11	Bigelowiella natans plastid
145	NC_008456	TGA	4	95801	95812	12	Drimys granadensis chloroplast
146	NC_008457	TGA	4	30620	30631	12	Piper cenocladum chloroplast
147	NC_008457	TGA	4	94475	94486	12	Piper cenocladum chloroplast
148	NC_008589	TGA	4	76455	76466	12	Thalassiosira pseudonana chloroplast
149	NC_008788	TGA	4	75951	75962	12	Nuphar advena chloroplast
150	NC_008788	TGA	4	97203	97214	12	Nuphar advena chloroplast
151	NC_008788	TGA	4	146416	146427	12	Nuphar advena chloroplast
152	NC_008796	TGA	4	51664	51674	11	Ranunculus macranthus chloroplast
153	NC_008796	TGA	4	91359	91370	12	Ranunculus macranthus chloroplast
154	NC_008822	TGA	4	111318	111329	12	Chlorokybus atmophyticus chloroplast
155	NC_009598	TGA	4	93771	93782	12	Chloranthus spicatus chloroplast
156	NC_009599	TGA	4	94875	94886	12	Buxus microphylla chloroplast
157	NC_009599	TGA	4	127269	127280	12	Buxus microphylla chloroplast
158	NC_009600	TGA	4	94818	94829	12	Illicium oligandrum chloroplast
159	NC_009601	TGA	4	68382	68393	12	Dioscorea elephantipes chloroplast
160	NC_009601	TGA	4	89622	89633	12	Dioscorea elephantipes chloroplast
161	NC_009681	TGA	4	36997	37008	12	Leptosira terrestris chloroplast
162	NC_009808	TGA	4	62095	62106	12	Ipomoea purpurea chloroplast
163	NC_009962	TGA	4	93310	93321	12	Ceratophyllum demersum chloroplast
164	NC_010093	TGA	4	27350	27361	12	Acorus americanus chloroplast
165	NC_010093	TGA	4	53397	53407	11	Acorus americanus chloroplast
166	NC_010109	TGA	4	96210	96221	12	Lemna minor chloroplast
167	NC_010359	TGA	4	40871	40882	12	Aneura mirabilis chloroplast
168	NC_010359	TGA	4	99035	99045	11	Aneura mirabilis chloroplast
169	NC_010654	TGA	4	44991	45001	11	Welwitschia mirabilis chloroplast
170	NC_010776	TGA	4	91855	91865	11	Fagopyrum esculentum subsp. ancestrale chloroplast
171	NC_011031	TGA	4	8185	8195	11	Oedogonium cardiacum chloroplast
172	NC_011163	TGA	4	35070	35080	11	Cicer arietinum chloroplast
173	NC_011395	TGA	4	8858	8869	12	Babesia bovis T2Bo apicoplast
174	NC_011954	TGA	4	4680	4691	12	Ephedra equisetina chloroplast
175	NC_011954	TGA	4	104371	104381	11	Ephedra equisetina chloroplast
176	NC_012097	TGA	4	39073	39084	12	Pycnococcus provasolii chloroplast
177	NC_012099	TGA	4	36008	36019	12	Pyramimonas parkeae chloroplast
178	NC_012615	TGA	4	95113	95124	12	Megaleranthis saniculifolia chloroplast
179	NC_012898	TGA	4	46567	46578	12	Aureococcus anophagefferens chloroplast
180	NC_012903	TGA	4	27524	27535	12	Aureoumbra lagunensis chloroplast
181	NC_012978	TGA	4	12013	12024	12	Parachlorella kessleri chloroplast
182	NC_013086	TGA	4	15445	15455	11	Selaginella moellendorffii plastid
183	NC_013359	TGA	4	86757	86767	11	Bryopsis hypnoides chloroplast
184	NC_013498	TGA	4	14594	14605	12	Ectocarpus siliculosus chloroplast
185	NC_013703	TGA	4	40747	40757	11	Cryptomonas paramecium plastid
186	NC_013823	TGA	4	124001	124012	12	Typha latifolia chloroplast
187	NC_013991	TGA	4	71889	71901	13	Phoenix dactylifera chloroplast
188	NC_013991	TGA	4	93485	93496	12	Phoenix dactylifera chloroplast
189	NC_014056	TGA	4	89514	89525	12	Oncidium Gower Ramsey chloroplast
190	NC_013707	TGA	4	93274	93285	12	Olea europaea chloroplast

ChloroMitoSSRDB 2.0 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

Chloroplast Motifs - Imperfect TGA Repeats