ChloroMitoSSRDB 2.0 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

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Chloroplast Motifs - Imperfect TCAA Repeats

S.NoSequence IDMotifIterationsStartEndTract LengthSequence Name
1NC_015401TCAA432433815Olea europaea subsp. europaea plastid
2NC_015604TCAA432433815Olea europaea subsp. cuspidata chloroplast
3NC_015608TCAA432333715Olea woodiana subsp. woodiana chloroplast
4NC_015623TCAA432433815Olea europaea subsp. maroccana chloroplast
5NC_015891TCAA4312153122915Spirodela polyrhiza chloroplast
6NC_020361TCAA430832316Podocarpus totara chloroplast
7NC_010433TCAA412537612539015 Manihot esculenta chloroplast
8NC_012224TCAA412818912820517 Jatropha curcas chloroplast
9NC_013707TCAA430131515 Olea europaea chloroplast
10NC_011087TCAA3205532056412Paulinella chromatophora chromatophore
11NC_011087TCAA347582747583812Paulinella chromatophora chromatophore
12NC_011087TCAA357418657419611Paulinella chromatophora chromatophore
13NC_011087TCAA383958283959211Paulinella chromatophora chromatophore
14NC_014267TCAA3294012941212Kryptoperidinium foliaceum chloroplast
15NC_014340TCAA311845111846212Chromera velia strain CCMP2878 chloroplast
16NC_014569TCAA3414614147212Erodium texanum plastid
17NC_014674TCAA37352736312Castanea mollissima chloroplast
18NC_014675TCAA3405104052213Isoetes flaccida chloroplast
19NC_014675TCAA3635026351312Isoetes flaccida chloroplast
20NC_014697TCAA312725512726511Prunus persica chloroplast
21NC_014699TCAA3117731178412Equisetum arvense chloroplast
22NC_014807TCAA35365537612Corynocarpus laevigata chloroplast
23NC_015083TCAA3608776088812Erodium carvifolium chloroplast
24NC_015113TCAA310402310403311Anthriscus cerefolium chloroplast
25NC_015139TCAA312345012346011Brassica rapa subsp. pekinensis chloroplast
26NC_015206TCAA312558212559211Fragaria vesca subsp. vesca chloroplast
27NC_015308TCAA310949910950911Hevea brasiliensis chloroplast
28NC_015645TCAA3615996161012Schizomeris leibleinii chloroplast
29NC_015891TCAA3190561906712Spirodela polyrhiza chloroplast
30NC_015892TCAA3179481795912Magnolia kwangsiensis chloroplast
31NC_015894TCAA3184221843312Wolffiella lingulata chloroplast
32NC_015899TCAA3182621827312Wolffia australiana chloroplast
33NC_015996TCAA312936212937211Pyrus pyrifolia chloroplast
34NC_016063TCAA3321063211712Cephalotaxus wilsoniana chloroplast DNA
35NC_016063TCAA3360483605912Cephalotaxus wilsoniana chloroplast DNA
36NC_016069TCAA3796327964312Picea morrisonicola chloroplast
37NC_016430TCAA3306733068412Eleutherococcus senticosus chloroplast
38NC_016433TCAA312358312359513Sesamum indicum chloroplast
39NC_016468TCAA36925693511Boea hygrometrica chloroplast
40NC_016468TCAA312312212313413Boea hygrometrica chloroplast
41NC_016471TCAA3188411885212Neottia nidus-avis plastid
42NC_016471TCAA3819728198413Neottia nidus-avis plastid
43NC_016734TCAA312300512301511Brassica napus chloroplast
44NC_016735TCAA3242812429111Fucus vesiculosus chloroplast
45NC_016753TCAA3187981880912Colocasia esculenta chloroplast
46NC_016753TCAA311910211911211Colocasia esculenta chloroplast
47NC_016921TCAA312617912618911Pentactina rupicola chloroplast
48NC_016986TCAA3186801869112Ginkgo biloba chloroplast
49NC_016986TCAA312537812538912Ginkgo biloba chloroplast
50NC_017602TCAA3173121732312Elaeis guineensis chloroplast
51NC_017609TCAA3174281743912Phalaenopsis equestris chloroplast
52NC_018051TCAA3691136912412Vigna unguiculata chloroplast
53NC_018051TCAA314166514167713Vigna unguiculata chloroplast
54NC_018114TCAA31292130312Erycina pusilla chloroplast
55NC_018357TCAA3179571796812Magnolia denudata chloroplast
56NC_018541TCAA3171331714412Elodea canadensis chloroplast
57NC_018565TCAA312460512461511Pachycladon enysii chloroplast
58NC_018766TCAA312563512564511Fragaria vesca subsp. bracteata chloroplast
59NC_018767TCAA312565212566211Fragaria mandshurica plastid
60NC_019601TCAA312550512551511Fragaria chiloensis chloroplast
61NC_019602TCAA312552312553311Fragaria virginiana chloroplast
62NC_019628TCAA3905749058512Pellia endiviifolia chloroplast
63NC_020014TCAA310125910127012Nannochloropsis gaditana chloroplast
64NC_020018TCAA3314913150111Monomorphina aenigmatica strain UTEX1284 chloroplast
65NC_020098TCAA312374812376013Tectona grandis chloroplast
66NC_020146TCAA3446424465211Equisetum hyemale chloroplast
67NC_020152TCAA37377738812Quercus rubra plastid
68NC_020152TCAA313054413055411Quercus rubra plastid
69NC_020316TCAA3180351804612Magnolia officinalis chloroplast
70NC_020317TCAA3180661807712Magnolia officinalis subsp. biloba voucher SC001 chloroplast
71NC_020318TCAA3179781798912Magnolia grandiflora voucher NJ016 chloroplast
72NC_020362TCAA3193331934412Heliconia collinsiana plastid
73NC_020362TCAA315323015324213Heliconia collinsiana plastid
74NC_020363TCAA3174681747912Zingiber spectabile plastid
75NC_020364TCAA3170811709212Pseudophoenix vinifera plastid
76NC_020365TCAA3167901680112Calamus caryotoides plastid
77NC_020366TCAA3171851719612Bismarckia nobilis plastid
78NC_020367TCAA3174351744612Dasypogon bromeliifolius plastid
79NC_020367TCAA312694512695511Dasypogon bromeliifolius plastid
80NC_020431TCAA3165331654412Salvia miltiorrhiza chloroplast
81NC_020438TCAA3572985730811Gonium pectorale chloroplast
82NC_020438TCAA310370110371111Gonium pectorale chloroplast
83NC_020438TCAA312288012289011Gonium pectorale chloroplast
84NC_020438TCAA315641515642511Gonium pectorale chloroplast
85NC_020438TCAA319686319687311Gonium pectorale chloroplast
86NC_020460TCAA3601026011312Euglena viridis culture-collection ATCC:PRA110 chloroplast
87NC_020460TCAA3746907470112Euglena viridis culture-collection ATCC:PRA110 chloroplast
88NC_020607TCAA3347783478811Artemisia frigida chloroplast
89NC_021075TCAA3497514976111Calliarthron tuberculosum chloroplast
90NC_021091TCAA314211214212413Vigna angularis chloroplast DNA
91NC_021101TCAA31942195312Francoa sonchifolia plastid
92NC_021102TCAA312417312418311Pachycladon cheesemanii chloroplast
93NC_021109TCAA3238942390411Pleodorina starrii plastid
94NC_021109TCAA3248012481212Pleodorina starrii plastid
95NC_021110TCAA3316563166712Cephalotaxus oliveri chloroplast
96NC_021110TCAA3355913560212Cephalotaxus oliveri chloroplast
97NC_021121TCAA312634712635711Ardisia polysticta chloroplast
98NC_021423TCAA34604461512Catharanthus roseus cultivar Pacifica Punch Halo chloroplast
99NC_021429TCAA3164171642812Cymbidium aloifolium voucher KUN:YJB100604 chloroplast
100NC_021430TCAA3163891640012Cymbidium sinense voucher KUN:YJB100605 chloroplast
101NC_021431TCAA3164641647512Cymbidium tortisepalum voucher KUN:HJL091027 chloroplast
102NC_021432TCAA3161391615012Cymbidium tracyanum voucher KUN:YJB100606 chloroplast
103NC_021433TCAA3163411635212Cymbidium mannii voucher KUN:YJB100602 chloroplast
104NC_021438TCAA3414704148011Gnetum montanum chloroplast
105NC_021439TCAA311669011670011Pinus massoniana chloroplast
106NC_021440TCAA311854511855511Pinus taeda chloroplast
107NC_021449TCAA3531825319312Utricularia gibba chloroplast
108NC_021449TCAA312499512500612Utricularia gibba chloroplast
109NC_021618TCAA3268252683612Grateloupia taiwanensis plastid
110NC_021636TCAA314388314389513Glycine tomentella voucher CSIRO:G1403 chloroplast
111NC_021645TCAA314347014348213Glycine cyrtoloba voucher CSIRO:G1267 chloroplast
112NC_021646TCAA314377314378513Glycine stenophita voucher CSIRO:G1974 chloroplast
113NC_021647TCAA314368714369913Glycine canescens voucher CSIRO:G1232 chloroplast
114NC_021648TCAA314395914397113Glycine dolichocarpa voucher CSIRO:G1134 chloroplast
115NC_021649TCAA314417014418213Glycine falcata voucher CSIRO:G1718 chloroplast
116NC_021650TCAA314394714395913Glycine syndetika voucher CSIRO:G1300 chloroplast
117NC_021761TCAA311260211261312Secale cereale chloroplast
118NC_021936TCAA3193111932212Najas flexilis chloroplast
119NC_022099TCAA3795407955112Medicago truncatula cultivar Jemalong 2HA plastid
120NC_022100TCAA3793407935112Medicago truncatula cultivar Borung plastid
121NC_022136TCAA3274302744112Lygodium japonicum chloroplast
122NC_000925TCAA3484414845212 Porphyra purpurea chloroplast
123NC_000925TCAA311885111886111 Porphyra purpurea chloroplast
124NC_000932TCAA312440712441711 Arabidopsis thaliana chloroplast
125NC_001631TCAA311660211661211 Pinus thunbergii chloroplast
126NC_001713TCAA310835010836112 Odontella sinensis chloroplast
127NC_001840TCAA312171912173012 Cyanidium caldarium chloroplast
128NC_002186TCAA3111221113211 Mesostigma viride chloroplast
129NC_002186TCAA3712327124312 Mesostigma viride chloroplast
130NC_002186TCAA3931899320012 Mesostigma viride chloroplast
131NC_002186TCAA310952310953311 Mesostigma viride chloroplast
132NC_002186TCAA311130711131711 Mesostigma viride chloroplast
133NC_002202TCAA312206512207511 Spinacia oleracea plastid
134NC_003119TCAA3795407955112 Medicago truncatula chloroplast
135NC_003386TCAA3216272163812 Psilotum nudum chloroplast
136NC_004115TCAA3365713658212 Chaetosphaeridium globosum chloroplast
137NC_004115TCAA312952812953811 Chaetosphaeridium globosum chloroplast
138NC_004543TCAA3393283933811 Anthoceros formosae chloroplast
139NC_004799TCAA3643506436112 Cyanidioschyzon merolae strain 10D chloroplast
140NC_004993TCAA3173231733412 Calycanthus floridus var. glaucus chloroplast
141NC_005086TCAA3202032021412 Amborella trichopoda chloroplast
142NC_005353TCAA313244813245811 Chlamydomonas reinhardtii chloroplast
143NC_006050TCAA3187651877612 Nymphaea alba chloroplast
144NC_006290TCAA3303953040612 Panax ginseng chloroplast
145NC_007407TCAA3169101692112 Acorus calamus plastid
146NC_007407TCAA3559815599313 Acorus calamus plastid
147NC_007407TCAA3850598507012 Acorus calamus plastid
148NC_007499TCAA3173551736612 Phalaenopsis aphrodite subsp. formosana chloroplast
149NC_007943TCAA3320033201311 Solanum bulbocastanum chloroplast
150NC_008097TCAA3399643997512 Chara vulgaris chloroplast
151NC_008114TCAA3788957890612 Pseudendoclonium akinetum chloroplast
152NC_008114TCAA314466814467912 Pseudendoclonium akinetum chloroplast
153NC_008116TCAA3557225573312 Staurastrum punctulatum chloroplast
154NC_008117TCAA3879238793311 Zygnema circumcarinatum chloroplast
155NC_008325TCAA310441110442111 Daucus carota chloroplast
156NC_008326TCAA3180701808112 Liriodendron tulipifera chloroplast
157NC_008334TCAA32028203912 Citrus sinensis chloroplast
158NC_008336TCAA312639112640111 Nandina domestica chloroplast
159NC_008407TCAA334735711 Jasminum nudiflorum chloroplast
160NC_008408TCAA3125031251513 Bigelowiella natans plastid
161NC_008456TCAA3176751768612 Drimys granadensis chloroplast
162NC_008457TCAA3162401625112 Piper cenocladum chloroplast
163NC_008457TCAA3174651747612 Piper cenocladum chloroplast
164NC_008535TCAA34470448112 Coffea arabica chloroplast
165NC_008535TCAA314665614666813 Coffea arabica chloroplast
166NC_008788TCAA38575858713 Nuphar advena chloroplast
167NC_008788TCAA3186291864012 Nuphar advena chloroplast
168NC_009259TCAA314074314075513 Phaseolus vulgaris chloroplast
169NC_009265TCAA3646276463812 Aethionema cordifolium chloroplast
170NC_009265TCAA312386912387911 Aethionema cordifolium chloroplast
171NC_009266TCAA312391312392311 Aethionema grandiflorum chloroplast
172NC_009267TCAA312441212442211 Olimarabidopsis pumila chloroplast
173NC_009268TCAA312342012343011 Arabis hirsuta chloroplast
174NC_009269TCAA312420212421211 Barbarea verna chloroplast
175NC_009270TCAA312420912421911 Capsella bursa-pastoris chloroplast
176NC_009271TCAA3159301594112 Crucihimalaya wallichii chloroplast
177NC_009271TCAA312484612485611 Crucihimalaya wallichii chloroplast
178NC_009272TCAA310253810254811 Draba nemorosa chloroplast
179NC_009272TCAA311421211422211 Draba nemorosa chloroplast
180NC_009272TCAA312308912309911 Draba nemorosa chloroplast
181NC_009273TCAA312458212459211 Lepidium virginicum chloroplast
182NC_009275TCAA312474512475511 Nasturtium officinale chloroplast
183NC_009598TCAA3173411735212 Chloranthus spicatus chloroplast
184NC_009618TCAA3179941800512 Cycas taitungensis chloroplast
185NC_009681TCAA3450484505912 Leptosira terrestris chloroplast
186NC_009808TCAA311690511691612 Ipomoea purpurea chloroplast
187NC_009962TCAA3170171702812 Ceratophyllum demersum chloroplast
188NC_009963TCAA3749807499112 Cuscuta exaltata chloroplast
189NC_010093TCAA3165861659712 Acorus americanus chloroplast
190NC_010093TCAA3556575566913 Acorus americanus chloroplast
191NC_010093TCAA3847348474512 Acorus americanus chloroplast
192NC_010109TCAA3181701818112 Lemna minor chloroplast
193NC_010323TCAA3736187362912 Carica papaya chloroplast
194NC_010433TCAA3290602907112 Manihot esculenta chloroplast
195NC_010433TCAA310956710957711 Manihot esculenta chloroplast
196NC_010433TCAA315269715270913 Manihot esculenta chloroplast
197NC_010548TCAA3398613987212 Cryptomeria japonica chloroplast
198NC_010601TCAA36604661512 Guizotia abyssinica chloroplast
199NC_011152TCAA3375973760812 Picea sitchensis chloroplast
200NC_011153TCAA311744411745411 Pinus contorta chloroplast
201NC_011954TCAA3781257813612 Ephedra equisetina chloroplast
202NC_012052TCAA310649110650111 Syntrichia ruralis chloroplast
203NC_012224TCAA3893018931212 Jatropha curcas chloroplast
204NC_012615TCAA313114111 Megaleranthis saniculifolia chloroplast
205NC_012818TCAA3317183173013 Alsophila spinulosa chloroplast
206NC_012818TCAA3365673657812 Alsophila spinulosa chloroplast
207NC_012818TCAA3375383754912 Alsophila spinulosa chloroplast
208NC_012818TCAA311227211228312 Alsophila spinulosa chloroplast
209NC_012978TCAA3714577146711 Parachlorella kessleri chloroplast
210NC_013086TCAA3284192843012 Selaginella moellendorffii plastid
211NC_013086TCAA3370763708712 Selaginella moellendorffii plastid
212NC_013498TCAA3831028311211 Ectocarpus siliculosus chloroplast
213NC_013823TCAA3181281813912 Typha latifolia chloroplast
214NC_013843TCAA3691376914812 Vigna radiata chloroplast
215NC_013843TCAA314168914170113 Vigna radiata chloroplast
216NC_013991TCAA3175611757212 Phoenix dactylifera chloroplast
217NC_014056TCAA3649976500812 Oncidium Gower Ramsey chloroplast
218NC_014057TCAA3826628267312 Pisum sativum chloroplast