Compound Compound Repeats of Cucurbita pepo mitochondrion
Click on Table Heading To Sort Results Accordingly
| S.No. | Genome ID | SSR | SSR Type | Start | End | Tract Length | Primer Design |
|---|---|---|---|---|---|---|---|
| 1 | NC_014050 | (CTT)4tcactcttgaactaggtaaagc(AT)6 | c | 92048 | 92093 | 46 | Design Primer |
| 2 | NC_014050 | (TTCT)3ttcccgaactgtaaacaagggaaataggctggattggatgagaagcgactgaaccgtcacctatttcttctttttcttctcttgatcctgaac(TCAA)3 | c | 135166 | 135282 | 117 | Design Primer |
| 3 | NC_014050 | (AAAG)4a(ATTG)3 | c | 148382 | 148410 | 29 | Design Primer |
| 4 | NC_014050 | (AAAG)4aggagggagagggaaaaataagtaaatcaaaatgacaagagcccagattaca(AATG)3 | c | 163045 | 163124 | 80 | Design Primer |
| 5 | NC_014050 | (ACAA)3acctatcaagcattttttcggcaaatcatctctaggctttcaaaggcatccaaccaattggtatcccattgaaagat(AGAA)3 | c | 267474 | 267574 | 101 | Design Primer |
| 6 | NC_014050 | (AGAA)3aaagaaagaggctttccacatatcatatgtattgtcctaaggatttgtatcagctgtagc(AAAG)3 | c | 293567 | 293650 | 84 | Design Primer |
| 7 | NC_014050 | (TTTC)5tcagtggtggtatacaatcggtttaggtactaaggggtatggatctttctttatacgggaggggagctcttctttttcta(TTCT)4 | c | 297452 | 297567 | 116 | Design Primer |
| 8 | NC_014050 | (AAAC)3cccgatt(CAAA)3 | c | 297841 | 297871 | 31 | Design Primer |
| 9 | NC_014050 | (GCAA)3caacaacatattcaattcattacaggcgcgggaaggg(GTC)4 | c | 348719 | 348779 | 61 | Design Primer |
| 10 | NC_014050 | (AAGA)3ccgagctagcatcttctaactaagtctttgaaagaccgcgtagttcagcttctttatttaaagtcaagtcaggcagttagaatagtaggcttata(TAT)4 | c | 369086 | 369204 | 119 | Design Primer |
| 11 | NC_014050 | (CTTA)3ctgacttactcattcagtggaacctattctcctcgtcttctcttta(CTTT)3 | c | 373248 | 373317 | 70 | Design Primer |
| 12 | NC_014050 | (TCCC)3ttacttgacggga(AATG)3 | c | 373947 | 373983 | 37 | Design Primer |
| 13 | NC_014050 | (TACTGA)3aagtcaagactaaagatca(AGCT)3 | c | 376534 | 376582 | 49 | Design Primer |
| 14 | NC_014050 | (AAG)4attattacattacgggaaagaagggtcaaggtcaagctcattcacttatagagcac(AAG)4attcattacgagaaggtaatgctactaaacgagacaagaagaactacaagataattatattacaggagggggagagtaacgctaacctaacgtctcgaac(AAG)4aaagattcaattcattacaggaaggaaggtaaagtcagacctgacgaagaacaactgaattacaagcaagaaggggtaaagcttacctgacgagac(AAG)5 | c | 376966 | 377268 | 303 | Design Primer |
| 15 | NC_014050 | (ATTC)3aatcctcaagcaag(AGA)4 | c | 384792 | 384829 | 38 | Design Primer |
| 16 | NC_014050 | (TTCA)4ttctttctcct(TAAC)3tactttgct(ACTA)3 | c | 385290 | 385349 | 60 | Design Primer |
| 17 | NC_014050 | (AGA)4gaatgtattgtatgtaaagaaag(AGTA)3aagccttccctgtc(GAAA)3 | c | 388295 | 388367 | 73 | Design Primer |
| 18 | NC_014050 | (AGGCT)3ggctttcactc(CTTG)3ctgggtgtt(GGAA)3 | c | 388474 | 388532 | 59 | Design Primer |
| 19 | NC_014050 | (TTCT)3tcttttttagaaccaagtccttgaagccataataccaa(TTATG)3 | c | 390934 | 390998 | 65 | Design Primer |
| 20 | NC_014050 | (TCTTT)3gattctgcttgaaagacgaaagaaatgaaaggaagatgaatgagaagagcatatgaaatccttcttgaacctc(CTGG)3 | c | 402449 | 402548 | 100 | Design Primer |
| 21 | NC_014050 | (AGAGG)3aacagcgagacaaggggacgagtcatatccgagtgaaggagat(AAGG)3 | c | 420729 | 420798 | 70 | Design Primer |
| 22 | NC_014050 | (TTC)4tcatccagcttacctatacctagttcaacccgagggaaatcaaagagctact(CAAC)3 | c | 426942 | 427017 | 76 | Design Primer |
| 23 | NC_014050 | (AAG)4gatgaatgagacagattgaactcttgaacaaggtaaagc(GGCT)3 | c | 493530 | 493592 | 63 | Design Primer |
| 24 | NC_014050 | (GAA)4gagaatgagacttaacagt(GAAA)3 | c | 531296 | 531338 | 43 | Design Primer |
| 25 | NC_014050 | (CTTA)3acctaatgggtctcgctcattgcttc(CCTG)3ccaccgcacgcaacctctctctatttcttagctttatttcagtgggtaaataggttgcttacttaattagacttctaacccaactccc(TACT)3 | c | 532156 | 532305 | 150 | Design Primer |
| 26 | NC_014050 | (ATTA)3gttgcttaagtagagtaagtaaatggcgtaaccgtaaccgaacactctctttgtttgtttcattgaaggtaggtagagtaaag(ATTC)3 | c | 538175 | 538281 | 107 | Design Primer |
| 27 | NC_014050 | (CTTT)4acagtctggctgctgaatagtgtttag(AATC)3 | c | 543314 | 543368 | 55 | Design Primer |
| 28 | NC_014050 | (TAAC)3tgccttgactgcttgctttgcttgctctttcttgcttgctgttcaggactattactgattaaccgtaaccttctttctctgttctttcccg(CTTA)4 | c | 543496 | 543614 | 119 | Design Primer |
| 29 | NC_014050 | (CT)7gtctacttgcttggcttgcttgttctccctccttcccttgcttgcgcttcctgcgtaaca(GCTT)3 | c | 543729 | 543814 | 86 | Design Primer |
| 30 | NC_014050 | (TTGTC)3tgtctgacttaccttacctggttgcttgctctgcctgctcttgctctggtctgtct(GCTC)3ctctcctggttgctctgtctgtatgtaaccttagcttaagcttaactgctgctggctgctctgc(GCTCT)3gcttcc(CCTG)3gcttgcctgaagcttgtc(TGTT)3 | c | 545449 | 545658 | 210 | Design Primer |
| 31 | NC_014050 | (CTTT)4tcttgcttgctagctcgggctgtctctgctctgtctttcgttctcttcgttctcttccttctctttctt(CTTG)3 | c | 546006 | 546102 | 97 | Design Primer |
| 32 | NC_014050 | (TAGA)3ctgatcctactgattgaacgagtttagagt(GAAA)3 | c | 605615 | 605668 | 54 | Design Primer |
| 33 | NC_014050 | (AAC)6aagaacaatttacattacggaggaggaaggtaaagctactcccctaacg(TCTAAC)3ttctaactct(CTCTAA)3 | c | 639664 | 639776 | 113 | Design Primer |
| 34 | NC_014050 | (CTTT)3acagtagagtaagtaaatgaatgacggaaccgtaaccgaacttatactgtactttctttgatttcaggtagagtcaag(ATTC)3 | c | 642200 | 642301 | 102 | Design Primer |
| 35 | NC_014050 | (TTC)5tttttcggaaggctag(ATATA)3 | c | 645514 | 645559 | 46 | Design Primer |
| 36 | NC_014050 | (GAAA)3gacaagatgaaacaaaagaagaatgagactgaacaggaagggct(GAA)4aatgaaactagaattatccgtcacctatttcttctttcaatgaatgaaatcagggagacgaaagaaagacaagatgaaacgaaagatgaat(GA)6 | c | 655061 | 655231 | 171 | Design Primer |
| 37 | NC_014050 | (CTAA)3atcatgataattccttgtttacgaggt(GAAA)3gact(GAAA)4 | c | 674643 | 674713 | 71 | Design Primer |
| 38 | NC_014050 | (AAGA)3ggagcccggtt(CAGTAG)3ctcagacgaggaaaag(GTTT)3 | c | 675342 | 675410 | 69 | Design Primer |
| 39 | NC_014050 | (AAGA)4agaatcagtttcgaataggaacccaaaggcaggcgtgagtgcagtagacgtttgaaagactatatatatagaactcaaatctttcatccctgtttcga(AATAG)3 | c | 685331 | 685459 | 129 | Design Primer |
| 40 | NC_014050 | (TCTT)3acttacaggcaggcagtcgagtaaaaaaaagagtgtttgaaggaaaaggttggttttcggg(TTC)4 | c | 711381 | 711465 | 85 | Design Primer |
| 41 | NC_014050 | (AAAG)3aaaatggatcaatcagagaatattcatcttgacaac(AAGA)3 | c | 725223 | 725282 | 60 | Design Primer |
| 42 | NC_014050 | (AGA)4aagatgaattcgacttaactccttatacctttttgacagt(GAAA)3 | c | 731573 | 731636 | 64 | Design Primer |
| 43 | NC_014050 | (ACTG)3atagtgagaaaaccaaatccggctaaataccaatacctatgac(AGGT)3 | c | 752405 | 752471 | 67 | Design Primer |
| 44 | NC_014050 | (CTT)5ttcatattgggtttcggactcagccactgacttctcttccattttctcaaaaggcagggtctgacagcgaggactaaataagacc(CCAA)3 | c | 759891 | 760002 | 112 | Design Primer |
| 45 | NC_014050 | (TCCT)3tcttattcattctcctgaacctatttcttcagtctccttcactattattctttccctctgtaaataggtg(TTTC)5 | c | 769821 | 769922 | 102 | Design Primer |
| 46 | NC_014050 | (TTC)4cggttcaggcgcttctcttcctgttctttcattc(TCT)5 | c | 778277 | 778337 | 61 | Design Primer |
| 47 | NC_014050 | (AGCCT)3gtcccgtaaacgatcttctttcctctttacttgagtagtcagtcggtcagggaatcaatatcgtaggggcaggagttagttatctc(TCTT)4 | c | 778849 | 778965 | 117 | Design Primer |
| 48 | NC_014050 | (ATTC)3tcgttcactgtcaggaaagacgaaacgatgaaagaaaaggtgagactgaactgtcagtcaatcctcaactctctctgaatgaaacagtaaacacgactt(ATTC)3 | c | 791791 | 791913 | 123 | Design Primer |
| 49 | NC_014050 | (ATAGA)4ccctgatatgatacgactcagcaagactgcctttcccgcttacaaccggaaaaagaagccccacatagaatgtgaatagaag(GAAA)5 | c | 807021 | 807142 | 122 | Design Primer |
| 50 | NC_014050 | (AGTTAG)3acgttaggggagtagctttacccggccgtaatgtcaatcttgttgttgttcttgtcttcgtcaggggagtaacttgaacttccttgccgtaatgtcaatc(TTG)4 | c | 858295 | 858424 | 130 | Design Primer |
| 51 | NC_014050 | (TTCCC)3ctgcccctgtattccctgattattcttgaactgtaaaagatcaatactctac(TCCT)3 | c | 872817 | 872895 | 79 | Design Primer |
| 52 | NC_014050 | (CGGC)3tt(CTTG)4 | c | 916333 | 916362 | 30 | Design Primer |
| 53 | NC_014050 | (AGTT)3aaagaagaaattcattagctgcttgctttactggctggagaggaaagaa(AAG)5aaaagactaatccggcc(GGCT)3 | c | 930741 | 930845 | 105 | Design Primer |
| 54 | NC_014050 | (TTTG)3agggtagactctctctcaagctcctactgattgaactccgtaaactcaatcacctatttcttcttgatcctttggc(TACT)3 | c | 931624 | 931723 | 100 | Design Primer |