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ChloroMitoSSRDB 2.0
Webserver cum Database of Cholorplast and Mitochondrial Microsatellites
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Chloroplast SSRs
Mitochondrial SSRs
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All Perfect Repeat Motifs of Chloroplast Genomes
Click on the motif to get repeats
T
C
A
G
AG
CT
AC
GT
CA
TG
AT
TA
TC
GA
TCA
ACC
GGT
AGC
ACG
AGG
GAC
GTA
GCT
GTT
TTC
CTC
GCG
ATT
CTT
TTG
CAG
CGT
CAA
AAG
AAT
TGT
TAT
AGA
TCG
CTA
CCA
ATA
GGC
TAG
AAC
CGG
GCA
ACT
TAC
TAA
TCC
GAG
GAA
CCT
GCC
ATG
CTG
CAT
TGA
ACA
TTA
GGA
GAT
TGC
TGG
ATC
CAC
GTG
AGTA
CCAA
TGAT
GCCC
ATCT
TCCA
TGTA
TGTC
TTTA
TATT
AACT
CCCA
ATTG
ACAA
CGAT
CGAG
ACAT
TCCC
TCTG
TGCC
TTCA
TCAT
ATCC
CTTC
TTCT
GATG
TCTT
ACTT
GTAT
ATAA
TGCA
AGTT
GCAA
TTTG
TTTC
GAAA
ATCA
GATA
TGGT
AAAC
ATAC
TATG
CTCC
CTTT
ACCC
GCCT
CAAA
GGAG
ACTA
GAAT
ATTT
AGAT
TCCT
CTGC
ACCA
ATAG
GAAG
CTAA
ATGA
GGGA
CATT
TACT
TAGT
ATGG
AACC
CTTA
CCAT
TAGG
CTAT
TAAC
GGAT
TGAG
TTGT
TACA
AGCA
AGGC
AACA
GAGG
AGGA
CAAT
TAAA
TCTA
AACG
GGAA
CCTT
AATA
GAGT
AGGT
TTGA
CATA
TAGA
AGAA
TTCC
TCGT
CCCT
GTTG
GCGG
TCAA
TTAA
TTAG
AAGG
AAGT
CCTC
AATT
ATTC
AGGG
CGGG
TTGC
TCGG
TAAT
ATGT
AGAC
CTAG
CAAC
TATC
CAGG
AAAG
CTAC
AAGA
ACCG
GGTT
GTTT
AGCC
TGTT
GTCT
CTCG
ATTA
TGAA
AATG
TGGG
GTGG
TTAC
TCGA
AATAT
TTAAG
CAGAA
AGAGA
TTCCC
TAAAA
TAGTA
AAAGT
ATACA
AAAAT
TTTAT
TTAAA
AAATC
ATATT
AATGA
ATAGA
TTTCA
TTCTG
CTCTT
AAGAG
AAAGA
TATTC
AATTC
AATCA
ATTCT
AGAAT
TTATC
TATAG
ATCTA
TATCC
TAATG
AATTG
TGTTT
TAATT
ATTCA
GCAAT
ATTAT
ACTAT
AATTA
AAATT
ATTAA
AGAAA
CAATT
GAAAA
TCTTG
ATTAC
ATCCT
TATAA
TATTG
TGAAA
TATTT
AAGCA
TTTTG
TTTTA
TATAT
CAAAA
TCATA
TCAAA
GACCG
TCTTT
TAAAT
TTGAT
TCCTA
CAAAT
TGGAT
AAATA
AATAA
TAAAG
CCAAT
CAATA
ATGGT
TTAGA
CATTG
AAGAA
ATTTA
AGATA
ATTAG
TCCGT
AAGGG
CCATA
ACTTA
TTTGT
TTTCT
GAATA
TTTAG
CTTCT
TAAGA
CCAAC
ATAAA
ACGGA
AAAAG
AGAGT
CTTTA
ACTTT
ATATA
ATGTA
TTATA
CCTTC
AATAG
ATACC
CTTAT
TATGA
TTTAA
ATTTT
TTCTT
TAATA
TGGCC
AAACA
ATAAG
GAAAG
ATCAA
TACCA
TAGAA
CTATT
GAGGT
TTATT
TTTTC
ACCGA
AATTT
TTTGA
GTTTA
TGCAT
CAATG
AGTTA
TGAAT
GGAAA
CAATC
TATGT
ATACT
TCATT
CTAAT
AACTA
TGAGA
CTTTT
ATGAA
TCACC
TCATTC
GGAGTG
TTATAG
AATTGA
TTTAAA
TTAATT
TTTTTG
TCAAAT
TTCTAA
GAATTT
ATAGAA
ATTCAT
ATTACT
ATATTT
GGTTCC
TTTATA
TCTTCA
CTAATA
CATCCT
TAGGGA
TGTTTT
TCTTTT
TAAATG
TTAACG
TGGAGT
AAAAGG
GTTGGT
AGTCGA
CCGGAA
AAGCAA
ATAACA
TCCTTA
ATTTTA
TATTAG
TGACGA
TCTTAT
CTATTC
TATAGA
GAGGAA
TCATAT
TCTATC
TATTTT
ATCCAA
CGTTAA
TTTTCT
CAAGCC
TCTATT
TTTTAT
GAAGTC
CAAGAT
ATTGAT
AGAATG
ATTTAG
CATTTT
TTTCTA
TAGAGC
GAAAAG
TTCATA
ATATGA
TAAAAT
ATTCTA
CAAAAA
ACTAAT
TCCAAC
AAGAGG
TTAAAC
AGTAGA
ATTAGT
ATAGAT
ATCAAT
GAATAA
GAATAG
TGAATT
TCATTT
TATGTA
CTCTTG
ATAAAT
ATTAAT
ATATTA
TTCTAT
ATCTAT
TTTTTA
CTATAT
AAGTTT
AGTTGG
AAAAAT
TATAGT
TTATAA
TTAATA
TCAAAA
AAAAAG
TTTCAT
GAAGGG
AGAAAA
TTTTAA
TATAAG
ATATAA
AATATA
ATATCT
AAATAG
TTTTGA
CATTCT
AAAGAG
TATTGA
CTTATT
TTGTAT
CTTATC
AAAACA
GTAAGA
GTATTA
AAAATA
AGGGGA
TAGTAA
TTACCT
CTGCCG
CCTCTT
TCTGGT
CTATTA
AGAAGT
GTTGCG
ATTAAA
AGGAAA
TAGAAT
ATCGTC
TCCCCA
GTGAAA
TATGTT
TATATT
GATAAA
CCAATG
AGTAAT
CTACCT
ATCTGA
GGATAA
ACTTAG
AGAGAA
TTTCAC
ATTTTG
TCCTTC
GATATT
GAGCAG
AAAAGA
GAGAAT
TTAGTA
TTTACT
ATCTTT
CCGTCG
AGGAAG
GTGATG
AAGTAC
CAATGG
AAGAAC
AAAGAA
ACTTCT
AAATAA
CTCTTC
CATAGT
CAATAT
GAAAAA
TAGAAA
TAAATT
ACGTAA
ATTCAG
AGCCAC
GGTTCG
AATTTG
AATTAT
CTTTTT
TAAAAA
TCTTCC
GCGACG
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