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ChloroMitoSSRDB 2.0
Webserver cum Database of Cholorplast and Mitochondrial Microsatellites
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Chloroplast SSRs
Mitochondrial SSRs
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All Perfect Repeat Motifs of Chloroplast Genomes
Click on the motif to get repeats
G
T
C
A
TC
GA
AG
CT
AC
GT
CA
TG
AT
TA
CAT
ATG
AGT
ACA
TTA
TGA
GGA
GAT
TGG
TGC
ATC
CAC
GTG
CGC
ACG
TCA
ACC
GGT
AGG
GTA
GAC
GCT
GTT
TTC
ATT
CTC
GCG
CCG
CAG
TTG
CGT
CAA
AAG
AAT
TAT
AGA
TGT
CTA
TCG
CCA
ATA
TCT
GGC
AAC
GCA
CGG
TAA
TCC
ACT
TAC
GAA
GAG
GCC
CCT
AATT
ATTC
TAAT
ATGT
AGGG
CGGG
TTGC
TCGG
CAAC
TTAT
AGAC
CTAG
AAAG
CTAC
AAGA
TATC
GGTT
GTTT
ACCG
GTCT
AGCC
TGTT
ATTA
TGAA
TGGA
CTCG
TTAC
TCGA
AATG
TGGG
CCAA
TTGG
TGAT
AGTA
ATCT
TCCA
TGTA
GCCC
TTTA
TATT
TGTC
CCCA
ATTG
AACT
GATT
ACAA
CGAT
TTCA
TCAT
ACAT
TCCC
TCTG
TGCC
TTCT
GATG
TCTT
ATCC
CTTC
ACTT
GTAT
GCAA
TTTG
TTTC
GAAA
ATCA
AATC
TGCA
AGTT
AAAC
GATA
TGGT
CTTT
ATAC
TATG
CTCC
CAAA
GGAG
ACCC
GCCT
GAAT
ATTT
AGAT
ACTA
ACCA
ATAG
TCCT
ATGA
GGGA
CATT
TACT
TAGT
GAAG
CTAA
CCGA
CTTA
CCAT
ATGG
AACC
CTTG
TAGG
TAAC
GGAT
TGAG
TTGT
TACA
AGCA
AGGC
CAAT
TAAA
TCTA
AACA
GAGG
AGGA
AATA
AACG
GGAA
CCTT
GAGT
AGGT
TTGA
TAGA
AGAA
TTCC
CATA
TCAA
TTAA
TCGT
CCCT
GCGG
AAGG
AAGT
TTAG
TCAG
ATATA
ATGTA
TTATA
CCTTC
AATAG
ATACC
TTTAA
ATTTT
TTCTT
CTTAT
TATGA
TGGCC
TATGG
AAACA
TAGAA
CTATT
GAGGT
ATAAG
GAAAG
ATCAA
TACCA
AATTT
TTTGA
TTTTC
ACCGA
CAATC
GTTTA
ATCTT
TGCAT
CAATG
AGTTA
TGAAT
GGAAA
CTTTT
ATGAA
TTAAT
TCACC
ATACT
TCATT
CTAAT
AACTA
TGAGA
AATAT
TTAAG
CAGAA
AGAGA
TTCCC
TAAAA
TAGTA
AAAGT
ATACA
TTAAA
AAATC
AAAAT
TTTAT
AAGAG
ATATT
AATGA
ATAGA
TTTCA
TTCTG
CTCTT
AGAAT
AAAGA
TATTC
ATTGA
AATCA
ATTCT
TTATC
TATAG
AATTG
ATCTA
TATCC
TAATG
GCAAT
TGTTT
TAATT
ATTCA
AATTA
TAGGT
ACTAT
CAATT
AAATT
ATTAA
AGAAA
GAAAA
TCTTG
ATTAC
ATCCT
TGAAA
TATAA
TATTG
TATTT
TTTTA
AAGCA
TTTTG
TCAAA
TATAT
CAAAA
TCATA
CAAAT
GACCG
TCTTT
TAAAT
TTGAT
TCCTA
AAATA
AAGGA
AATAA
TAAAG
CCAAT
CAATA
ATGGT
CATTG
AAGAA
TTAGA
TAAAC
ATTTA
AGATA
ATTAG
TCCGT
TTTCT
CCATA
ACTTA
TTTGT
TAAGA
CCAAC
GAATA
TTTAG
CTTCT
CTTTA
TCTAT
ACTTT
ATAAA
ACGGA
AGAGT
ATTTTG
GGATAA
ACTTAG
AGAGAA
TTTCAC
AAAAGA
TCCTTC
AAAATT
GATATT
GAGCAG
GAGAAT
TTAGTA
TTTACT
CCGTCG
AAAGAA
TTTCTT
AGGAAG
GTGATG
AAGTAC
CAATGG
AAGAAC
ACTTCT
AAATAA
CTCTTC
CATAGT
CAATAT
GGTTCG
GAAAAA
TAGAAA
TAAATT
ACGTAA
ATTCAG
AGCCAC
CTTTTT
TAAAAA
AATTAT
TTCATT
TCTTCC
GCGACG
TTTTTG
TCATTC
TTATAG
AATTGA
TTTAAA
TTAATT
GAATTT
TCAAAT
TTCTAA
TCTTCA
ATAGAA
ATTCAT
ATTACT
TACATA
ATATTT
GGTTCC
TCTTTT
CTAATA
CATCCT
TAGGGA
TGTTTT
AAAAGG
TAAATG
TTAACG
TGGAGT
ATAACA
TCCTTA
ATTTTA
GTTGGT
CTATAA
CCGGAA
AAGCAA
TCTATC
TATTAG
TGACGA
TCTTAT
CTATTC
TATAGA
GAGGAA
TCATAT
TTTTCT
CAAGCC
TTTTTC
TATTTT
CGTTAA
TCTATT
TTTTAT
GAAGTC
CAAGAT
GAAAAG
TTCATA
ATTGAT
AGAATG
ATTTAG
CATTTT
TTTCTA
AATGAT
TAGAGC
ATATGA
TAAAAT
ATTCTA
CAGGAA
ACTAAT
TCCAAC
AAGAGG
TTAAAC
AGTAGA
ATTAGT
ATAGAT
ATCAAT
GAATAA
GAATAG
TCATTT
TATGTA
CTCTTG
CTATAT
ATAAAT
ATTAAT
ATATTA
TTCTAT
ATCTAT
TTTTTA
TCCTCT
AAGTTT
AGTTGG
AAAAAT
TCAAAA
AAAAAG
TTATAA
TTAATA
AGAAAA
TTTCAT
GAAGGG
AAATAG
TTTTGA
TTTTAA
TATAAG
ATATAA
TCTGAA
AATATA
AAAACA
GTAAGA
CATTCT
AAAGAG
TATTGA
CTTATT
TTGTAT
CTTATC
CCTCTT
GTATTA
AAAATA
TTATAT
AGGGGA
TAGTAA
CTGCCG
AGGAAA
TCTGGT
CTATTA
AGAAGT
GTTGCG
ATTAAA
TAGAAT
ATCGTC
TCCCCA
ATTTTC
GTGAAA
TATGTT
TATATT
CCAATG
AGTAAT
CTACCT
ATCTGA
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