ChloroMitoSSRDB 2.0 - Database of Microsatellites from Chloroplast & Mitochondrial Genomes

Chloroplast Motifs - Perfect TAT Repeats

S.No	Sequence ID	Motif	Iterations	Start	End	Tract Length	Sequence Name
1	NC_020438	TAT	18	58381	58434	54	Gonium pectorale chloroplast
2	NC_005353	TAT	15	158253	158297	45	Chlamydomonas reinhardtii chloroplast
3	NC_014675	TAT	14	39670	39711	42	Isoetes flaccida chloroplast
4	NC_021109	TAT	13	268381	268419	39	Pleodorina starrii plastid
5	NC_006861	TAT	10	99168	99197	30	Huperzia lucidula chloroplast
6	NC_014675	TAT	6	28771	28788	18	Isoetes flaccida chloroplast
7	NC_014676	TAT	6	10254	10271	18	Theobroma cacao chloroplast
8	NC_014874	TAT	6	16150	16167	18	Rhizanthella gardneri plastid
9	NC_015308	TAT	6	51930	51947	18	Hevea brasiliensis chloroplast
10	NC_001675	TAT	6	121808	121825	18	Cyanophora paradoxa cyanelle
11	NC_014807	TAT	5	16220	16234	15	Corynocarpus laevigata chloroplast
12	NC_015206	TAT	5	10442	10456	15	Fragaria vesca subsp. vesca chloroplast
13	NC_015308	TAT	5	32131	32145	15	Hevea brasiliensis chloroplast
14	NC_015891	TAT	5	30059	30073	15	Spirodela polyrhiza chloroplast
15	NC_016708	TAT	5	126406	126420	15	Millettia pinnata chloroplast
16	NC_016727	TAT	5	111100	111114	15	Silene vulgaris chloroplast
17	NC_017928	TAT	5	11305	11319	15	Plasmodium falciparum HB3 apicoplast
18	NC_018767	TAT	5	10426	10440	15	Fragaria mandshurica plastid
19	NC_020367	TAT	5	52686	52700	15	Dasypogon bromeliifolius plastid
20	NC_020460	TAT	5	14058	14072	15	Euglena viridis culture-collection ATCC:PRA110 chloroplast
21	NC_021189	TAT	5	27505	27519	15	Pyropia haitanensis voucher PH-38 chloroplast
22	NC_021647	TAT	5	79920	79934	15	Glycine canescens voucher CSIRO:G1232 chloroplast
23	NC_000925	TAT	5	27455	27469	15	Porphyra purpurea chloroplast
24	NC_000932	TAT	5	119156	119170	15	Arabidopsis thaliana chloroplast
25	NC_001603	TAT	5	59945	59959	15	Euglena gracilis chloroplast
26	NC_001666	TAT	5	20596	20610	15	Zea mays chloroplast
27	NC_002694	TAT	5	15044	15058	15	Lotus japonicus chloroplast
28	NC_007957	TAT	5	39686	39700	15	Vitis vinifera chloroplast
29	NC_008097	TAT	5	30361	30375	15	Chara vulgaris chloroplast
30	NC_008115	TAT	5	9443	9457	15	Eucalyptus globulus subsp. globulus chloroplast
31	NC_009598	TAT	5	15043	15057	15	Chloranthus spicatus chloroplast
32	NC_009600	TAT	5	49699	49713	15	Illicium oligandrum chloroplast
33	NC_009601	TAT	5	11585	11599	15	Dioscorea elephantipes chloroplast
34	NC_010323	TAT	5	9326	9340	15	Carica papaya chloroplast
35	NC_010323	TAT	5	49451	49465	15	Carica papaya chloroplast
36	NC_010772	TAT	5	107517	107531	15	Heterosigma akashiwo chloroplast
37	NC_011828	TAT	5	142164	142178	15	Trifolium subterraneum chloroplast
38	NC_011954	TAT	5	104941	104955	15	Ephedra equisetina chloroplast
39	NC_012052	TAT	5	49817	49831	15	Syntrichia ruralis chloroplast
40	NC_012052	TAT	5	112573	112587	15	Syntrichia ruralis chloroplast
41	NC_012224	TAT	5	14200	14214	15	Jatropha curcas chloroplast
42	NC_013823	TAT	5	76595	76609	15	Typha latifolia chloroplast
43	NC_014267	TAT	4	10247	10258	12	Kryptoperidinium foliaceum chloroplast
44	NC_014267	TAT	4	51944	51955	12	Kryptoperidinium foliaceum chloroplast
45	NC_014570	TAT	4	9356	9367	12	Eucalyptus grandis chloroplast
46	NC_014575	TAT	4	42172	42183	12	Cedrus deodara chloroplast
47	NC_014674	TAT	4	78415	78426	12	Castanea mollissima chloroplast
48	NC_014807	TAT	4	30676	30687	12	Corynocarpus laevigata chloroplast
49	NC_014808	TAT	4	88431	88442	12	Thalassiosira oceanica CCMP1005 chloroplast
50	NC_015113	TAT	4	15562	15573	12	Anthriscus cerefolium chloroplast
51	NC_015206	TAT	4	86400	86411	12	Fragaria vesca subsp. vesca chloroplast
52	NC_015543	TAT	4	82588	82599	12	Jacobaea vulgaris chloroplast
53	NC_015610	TAT	4	34737	34748	12	Nelumbo nucifera chloroplast
54	NC_015645	TAT	4	93368	93379	12	Schizomeris leibleinii chloroplast
55	NC_015645	TAT	4	120097	120108	12	Schizomeris leibleinii chloroplast
56	NC_015803	TAT	4	112801	112812	12	Indocalamus longiauritus plastid
57	NC_015817	TAT	4	112806	112817	12	Phyllostachys edulis chloroplast
58	NC_015820	TAT	4	112822	112833	12	Acidosasa purpurea chloroplast
59	NC_015826	TAT	4	112895	112906	12	Phyllostachys nigra var. henonis chloroplast
60	NC_015831	TAT	4	112545	112556	12	Ferrocalamus rimosivaginus plastid
61	NC_015891	TAT	4	10399	10410	12	Spirodela polyrhiza chloroplast
62	NC_015891	TAT	4	10415	10426	12	Spirodela polyrhiza chloroplast
63	NC_015891	TAT	4	33422	33433	12	Spirodela polyrhiza chloroplast
64	NC_015891	TAT	4	52035	52046	12	Spirodela polyrhiza chloroplast
65	NC_015891	TAT	4	78042	78053	12	Spirodela polyrhiza chloroplast
66	NC_015891	TAT	4	158523	158534	12	Spirodela polyrhiza chloroplast
67	NC_015894	TAT	4	5641	5652	12	Wolffiella lingulata chloroplast
68	NC_015894	TAT	4	54321	54332	12	Wolffiella lingulata chloroplast
69	NC_015899	TAT	4	53525	53536	12	Wolffia australiana chloroplast
70	NC_016058	TAT	4	62425	62436	12	Larix decidua chloroplast
71	NC_016064	TAT	4	72531	72542	12	Pseudotsuga sinensis var. wilsoniana chloroplast
72	NC_016064	TAT	4	94409	94420	12	Pseudotsuga sinensis var. wilsoniana chloroplast
73	NC_016433	TAT	4	23019	23030	12	Sesamum indicum chloroplast
74	NC_016668	TAT	4	8367	8378	12	Gossypium raimondii chloroplast
75	NC_016690	TAT	4	103944	103955	12	Gossypium tomentosum chloroplast
76	NC_016699	TAT	4	112830	112841	12	Phyllostachys propinqua chloroplast
77	NC_016708	TAT	4	119542	119553	12	Millettia pinnata chloroplast
78	NC_016727	TAT	4	50932	50943	12	Silene vulgaris chloroplast
79	NC_016728	TAT	4	28506	28517	12	Silene noctiflora chloroplast
80	NC_016728	TAT	4	56083	56094	12	Silene noctiflora chloroplast
81	NC_016728	TAT	4	129033	129044	12	Silene noctiflora chloroplast
82	NC_016728	TAT	4	129091	129102	12	Silene noctiflora chloroplast
83	NC_016729	TAT	4	4559	4570	12	Silene conica chloroplast
84	NC_016731	TAT	4	13792	13803	12	Synedra acus chloroplast
85	NC_016731	TAT	4	22241	22252	12	Synedra acus chloroplast
86	NC_016732	TAT	4	62414	62425	12	Dunaliella salina chloroplast
87	NC_016732	TAT	4	107501	107512	12	Dunaliella salina chloroplast
88	NC_016732	TAT	4	199182	199193	12	Dunaliella salina chloroplast
89	NC_016735	TAT	4	84934	84945	12	Fucus vesiculosus chloroplast
90	NC_016736	TAT	4	10451	10462	12	Ricinus communis chloroplast
91	NC_016736	TAT	4	75177	75188	12	Ricinus communis chloroplast
92	NC_016736	TAT	4	105452	105463	12	Ricinus communis chloroplast
93	NC_016753	TAT	4	49275	49286	12	Colocasia esculenta chloroplast
94	NC_016753	TAT	4	50045	50056	12	Colocasia esculenta chloroplast
95	NC_016753	TAT	4	123946	123957	12	Colocasia esculenta chloroplast
96	NC_016921	TAT	4	95367	95378	12	Pentactina rupicola chloroplast
97	NC_016927	TAT	4	108692	108703	12	Oryza meridionalis chloroplast
98	NC_017609	TAT	4	8933	8944	12	Phalaenopsis equestris chloroplast
99	NC_017609	TAT	4	102068	102079	12	Phalaenopsis equestris chloroplast
100	NC_017835	TAT	4	108680	108691	12	Oryza rufipogon chloroplast
101	NC_017894	TAT	4	8386	8397	12	Gossypium gossypioides chloroplast
102	NC_017928	TAT	4	15631	15642	12	Plasmodium falciparum HB3 apicoplast
103	NC_017928	TAT	4	17750	17761	12	Plasmodium falciparum HB3 apicoplast
104	NC_018051	TAT	4	81333	81344	12	Vigna unguiculata chloroplast
105	NC_018051	TAT	4	109834	109845	12	Vigna unguiculata chloroplast
106	NC_018109	TAT	4	71246	71257	12	Gossypium incanum chloroplast
107	NC_018110	TAT	4	8383	8394	12	Gossypium somalense chloroplast
108	NC_018110	TAT	4	71463	71474	12	Gossypium somalense chloroplast
109	NC_018111	TAT	4	8423	8434	12	Gossypium capitis-viridis chloroplast
110	NC_018112	TAT	4	8383	8394	12	Gossypium areysianum chloroplast
111	NC_018112	TAT	4	71495	71506	12	Gossypium areysianum chloroplast
112	NC_018113	TAT	4	8541	8552	12	Gossypium robinsonii chloroplast
113	NC_018113	TAT	4	28591	28602	12	Gossypium robinsonii chloroplast
114	NC_018523	TAT	4	81010	81021	12	Saccharina japonica chloroplast
115	NC_018565	TAT	4	28845	28856	12	Pachycladon enysii chloroplast
116	NC_018565	TAT	4	46463	46474	12	Pachycladon enysii chloroplast
117	NC_018565	TAT	4	49760	49771	12	Pachycladon enysii chloroplast
118	NC_018766	TAT	4	10412	10423	12	Fragaria vesca subsp. bracteata chloroplast
119	NC_018766	TAT	4	86457	86468	12	Fragaria vesca subsp. bracteata chloroplast
120	NC_018767	TAT	4	10450	10461	12	Fragaria mandshurica plastid
121	NC_018767	TAT	4	86461	86472	12	Fragaria mandshurica plastid
122	NC_019601	TAT	4	86361	86372	12	Fragaria chiloensis chloroplast
123	NC_019602	TAT	4	86380	86391	12	Fragaria virginiana chloroplast
124	NC_019649	TAT	4	18047	18058	12	Festuca ovina plastid
125	NC_020098	TAT	4	47421	47432	12	Tectona grandis chloroplast
126	NC_020147	TAT	4	59600	59611	12	Ophioglossum californicum chloroplast
127	NC_020319	TAT	4	153560	153571	12	Cycas revoluta chloroplast
128	NC_020341	TAT	4	112057	112068	12	Arundinaria gigantea chloroplast
129	NC_020363	TAT	4	125267	125278	12	Zingiber spectabile plastid
130	NC_020367	TAT	4	122943	122954	12	Dasypogon bromeliifolius plastid
131	NC_020438	TAT	4	79110	79121	12	Gonium pectorale chloroplast
132	NC_020438	TAT	4	172923	172934	12	Gonium pectorale chloroplast
133	NC_020607	TAT	4	64125	64136	12	Artemisia frigida chloroplast
134	NC_020795	TAT	4	50512	50523	12	Chondrus crispus plastid complete genome
135	NC_020795	TAT	4	103636	103647	12	Chondrus crispus plastid complete genome
136	NC_021075	TAT	4	136216	136227	12	Calliarthron tuberculosum chloroplast
137	NC_021091	TAT	4	110236	110247	12	Vigna angularis chloroplast DNA
138	NC_021102	TAT	4	46005	46016	12	Pachycladon cheesemanii chloroplast
139	NC_021109	TAT	4	259974	259985	12	Pleodorina starrii plastid
140	NC_021110	TAT	4	111006	111017	12	Cephalotaxus oliveri chloroplast
141	NC_021110	TAT	4	111029	111040	12	Cephalotaxus oliveri chloroplast
142	NC_021189	TAT	4	70784	70795	12	Pyropia haitanensis voucher PH-38 chloroplast
143	NC_021189	TAT	4	158298	158309	12	Pyropia haitanensis voucher PH-38 chloroplast
144	NC_021423	TAT	4	100550	100561	12	Catharanthus roseus cultivar Pacifica Punch Halo chloroplast
145	NC_021449	TAT	4	30536	30547	12	Utricularia gibba chloroplast
146	NC_021618	TAT	4	139351	139362	12	Grateloupia taiwanensis plastid
147	NC_021636	TAT	4	4840	4851	12	Glycine tomentella voucher CSIRO:G1403 chloroplast
148	NC_021646	TAT	4	4833	4844	12	Glycine stenophita voucher CSIRO:G1974 chloroplast
149	NC_021648	TAT	4	4837	4848	12	Glycine dolichocarpa voucher CSIRO:G1134 chloroplast
150	NC_021648	TAT	4	80146	80157	12	Glycine dolichocarpa voucher CSIRO:G1134 chloroplast
151	NC_021649	TAT	4	4843	4854	12	Glycine falcata voucher CSIRO:G1718 chloroplast
152	NC_021649	TAT	4	48191	48202	12	Glycine falcata voucher CSIRO:G1718 chloroplast
153	NC_021649	TAT	4	80346	80357	12	Glycine falcata voucher CSIRO:G1718 chloroplast
154	NC_021650	TAT	4	4839	4850	12	Glycine syndetika voucher CSIRO:G1300 chloroplast
155	NC_021650	TAT	4	80168	80179	12	Glycine syndetika voucher CSIRO:G1300 chloroplast
156	NC_021760	TAT	4	47401	47412	12	Triticum monococcum chloroplast
157	NC_021761	TAT	4	47488	47499	12	Secale cereale chloroplast
158	NC_021762	TAT	4	47372	47383	12	Triticum urartu chloroplast
159	NC_022100	TAT	4	91145	91156	12	Medicago truncatula cultivar Borung plastid
160	NC_022133	TAT	4	47290	47301	12	Aegilops tauschii chloroplast
161	NC_022135	TAT	4	47476	47487	12	Aegilops speltoides isolate SPE0661 chloroplast
162	NC_000925	TAT	4	49405	49416	12	Porphyra purpurea chloroplast
163	NC_000932	TAT	4	214	225	12	Arabidopsis thaliana chloroplast
164	NC_000932	TAT	4	28824	28835	12	Arabidopsis thaliana chloroplast
165	NC_001319	TAT	4	59083	59094	12	Marchantia polymorpha chloroplast
166	NC_001320	TAT	4	108670	108681	12	Oryza sativa Japonica Group plastid
167	NC_001568	TAT	4	5031	5042	12	Epifagus virginiana chloroplast
168	NC_001568	TAT	4	16033	16044	12	Epifagus virginiana chloroplast
169	NC_001603	TAT	4	13330	13341	12	Euglena gracilis chloroplast
170	NC_001603	TAT	4	68926	68937	12	Euglena gracilis chloroplast
171	NC_001675	TAT	4	121914	121925	12	Cyanophora paradoxa cyanelle
172	NC_001799	TAT	4	29644	29655	12	Toxoplasma gondii RH apicoplast
173	NC_001865	TAT	4	52482	52493	12	Chlorella vulgaris chloroplast
174	NC_002186	TAT	4	65587	65598	12	Mesostigma viride chloroplast
175	NC_002693	TAT	4	56293	56304	12	Oenothera elata subsp. hookeri plastid plastome I
176	NC_002694	TAT	4	15067	15078	12	Lotus japonicus chloroplast
177	NC_002694	TAT	4	78384	78395	12	Lotus japonicus chloroplast
178	NC_002762	TAT	4	47730	47741	12	Triticum aestivum chloroplast
179	NC_004543	TAT	4	62078	62089	12	Anthoceros formosae chloroplast
180	NC_004823	TAT	4	27502	27513	12	Eimeria tenella strain Penn State apicoplast
181	NC_005086	TAT	4	48490	48501	12	Amborella trichopoda chloroplast
182	NC_005087	TAT	4	16214	16225	12	Physcomitrella patens subsp. patens chloroplast
183	NC_005087	TAT	4	32582	32593	12	Physcomitrella patens subsp. patens chloroplast
184	NC_005087	TAT	4	105738	105749	12	Physcomitrella patens subsp. patens chloroplast
185	NC_005973	TAT	4	108629	108640	12	Oryza nivara chloroplast
186	NC_006050	TAT	4	64222	64233	12	Nymphaea alba chloroplast
187	NC_006050	TAT	4	115067	115078	12	Nymphaea alba chloroplast
188	NC_007499	TAT	4	101960	101971	12	Phalaenopsis aphrodite subsp. formosana chloroplast
189	NC_007957	TAT	4	118849	118860	12	Vitis vinifera chloroplast
190	NC_008097	TAT	4	8348	8359	12	Chara vulgaris chloroplast
191	NC_008097	TAT	4	130927	130938	12	Chara vulgaris chloroplast
192	NC_008114	TAT	4	189159	189170	12	Pseudendoclonium akinetum chloroplast
193	NC_008155	TAT	4	108635	108646	12	Oryza sativa Indica Group chloroplast
194	NC_008235	TAT	4	7023	7034	12	Populus alba chloroplast
195	NC_008235	TAT	4	27261	27272	12	Populus alba chloroplast
196	NC_008235	TAT	4	118252	118263	12	Populus alba chloroplast
197	NC_008325	TAT	4	5343	5354	12	Daucus carota chloroplast
198	NC_008325	TAT	4	51063	51074	12	Daucus carota chloroplast
199	NC_008325	TAT	4	63741	63752	12	Daucus carota chloroplast
200	NC_008334	TAT	4	83939	83950	12	Citrus sinensis chloroplast
201	NC_008336	TAT	4	117567	117578	12	Nandina domestica chloroplast
202	NC_008372	TAT	4	55672	55683	12	Stigeoclonium helveticum chloroplast
203	NC_008589	TAT	4	43692	43703	12	Thalassiosira pseudonana chloroplast
204	NC_008602	TAT	4	39077	39088	12	Sorghum bicolor chloroplast
205	NC_008788	TAT	4	36040	36051	12	Nuphar advena chloroplast
206	NC_008788	TAT	4	51405	51416	12	Nuphar advena chloroplast
207	NC_008788	TAT	4	115804	115815	12	Nuphar advena chloroplast
208	NC_008796	TAT	4	82097	82108	12	Ranunculus macranthus chloroplast
209	NC_009143	TAT	4	7091	7102	12	Populus trichocarpa chloroplast
210	NC_009266	TAT	4	46103	46114	12	Aethionema grandiflorum chloroplast
211	NC_009268	TAT	4	45860	45871	12	Arabis hirsuta chloroplast
212	NC_009270	TAT	4	7970	7981	12	Capsella bursa-pastoris chloroplast
213	NC_009271	TAT	4	46222	46233	12	Crucihimalaya wallichii chloroplast
214	NC_009272	TAT	4	45539	45550	12	Draba nemorosa chloroplast
215	NC_009273	TAT	4	46260	46271	12	Lepidium virginicum chloroplast
216	NC_009275	TAT	4	8091	8102	12	Nasturtium officinale chloroplast
217	NC_009275	TAT	4	46165	46176	12	Nasturtium officinale chloroplast
218	NC_009598	TAT	4	9255	9266	12	Chloranthus spicatus chloroplast
219	NC_009598	TAT	4	66403	66414	12	Chloranthus spicatus chloroplast
220	NC_009599	TAT	4	13283	13294	12	Buxus microphylla chloroplast
221	NC_009600	TAT	4	46731	46742	12	Illicium oligandrum chloroplast
222	NC_009808	TAT	4	84529	84540	12	Ipomoea purpurea chloroplast
223	NC_009962	TAT	4	66440	66451	12	Ceratophyllum demersum chloroplast
224	NC_010360	TAT	4	56064	56075	12	Oenothera glazioviana chloroplast
225	NC_010360	TAT	4	62159	62170	12	Oenothera glazioviana chloroplast
226	NC_010361	TAT	4	56141	56152	12	Oenothera biennis chloroplast
227	NC_010433	TAT	4	51316	51327	12	Manihot esculenta chloroplast
228	NC_010776	TAT	4	7741	7752	12	Fagopyrum esculentum subsp. ancestrale chloroplast
229	NC_011031	TAT	4	12410	12421	12	Oedogonium cardiacum chloroplast
230	NC_011031	TAT	4	33951	33962	12	Oedogonium cardiacum chloroplast
231	NC_011032	TAT	4	72452	72463	12	Brachypodium distachyon chloroplast
232	NC_011152	TAT	4	93359	93370	12	Picea sitchensis chloroplast
233	NC_011163	TAT	4	48281	48292	12	Cicer arietinum chloroplast
234	NC_011828	TAT	4	24968	24979	12	Trifolium subterraneum chloroplast
235	NC_011828	TAT	4	63680	63691	12	Trifolium subterraneum chloroplast
236	NC_011828	TAT	4	89992	90003	12	Trifolium subterraneum chloroplast
237	NC_011828	TAT	4	90468	90479	12	Trifolium subterraneum chloroplast
238	NC_011828	TAT	4	90691	90702	12	Trifolium subterraneum chloroplast
239	NC_011930	TAT	4	13689	13700	12	Keteleeria davidiana chloroplast
240	NC_011930	TAT	4	56087	56098	12	Keteleeria davidiana chloroplast
241	NC_012052	TAT	4	33271	33282	12	Syntrichia ruralis chloroplast
242	NC_012052	TAT	4	69324	69335	12	Syntrichia ruralis chloroplast
243	NC_012224	TAT	4	14216	14227	12	Jatropha curcas chloroplast
244	NC_012224	TAT	4	53571	53582	12	Jatropha curcas chloroplast
245	NC_012224	TAT	4	59890	59901	12	Jatropha curcas chloroplast
246	NC_012898	TAT	4	47732	47743	12	Aureococcus anophagefferens chloroplast
247	NC_013273	TAT	4	5829	5840	12	Coix lacryma-jobi chloroplast
248	NC_013498	TAT	4	67832	67843	12	Ectocarpus siliculosus chloroplast
249	NC_013823	TAT	4	123829	123840	12	Typha latifolia chloroplast
250	NC_013843	TAT	4	81357	81368	12	Vigna radiata chloroplast
251	NC_013843	TAT	4	109858	109869	12	Vigna radiata chloroplast
252	NC_014057	TAT	4	118563	118574	12	Pisum sativum chloroplast

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Chloroplast Motifs - Perfect TAT Repeats