ChloroMitoSSRDB 2.0 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

Back To Motif Summary

Chloroplast Motifs - Perfect AAAT Repeats

S.NoSequence IDMotifIterationsStartEndTract LengthSequence Name
1NC_008101AAAT511307011308920 Scenedesmus obliquus chloroplast
2NC_014674AAAT411947211948716Castanea mollissima chloroplast
3NC_015983AAAT415208515210016Cucumis melo subsp. melo chloroplast
4NC_020152AAAT411978011979516Quercus rubra plastid
5NC_007144AAAT415217615219116 Cucumis sativus chloroplast
6NC_013823AAAT4503375035216 Typha latifolia chloroplast
7NC_014676AAAT3505445055512Theobroma cacao chloroplast
8NC_014697AAAT3720597207012Prunus persica chloroplast
9NC_014808AAAT3412154122612Thalassiosira oceanica CCMP1005 chloroplast
10NC_014808AAAT311333211334312Thalassiosira oceanica CCMP1005 chloroplast
11NC_014874AAAT38146815712Rhizanthella gardneri plastid
12NC_015204AAAT36511652212Gossypium thurberi chloroplast
13NC_015206AAAT3557665577712Fragaria vesca subsp. vesca chloroplast
14NC_015308AAAT311872811873912Hevea brasiliensis chloroplast
15NC_015608AAAT34771478212Olea woodiana subsp. woodiana chloroplast
16NC_015645AAAT315979815980912Schizomeris leibleinii chloroplast
17NC_015803AAAT311247411248512Indocalamus longiauritus plastid
18NC_015803AAAT311568811569912Indocalamus longiauritus plastid
19NC_015817AAAT311569311570412Phyllostachys edulis chloroplast
20NC_015820AAAT311251311252412Acidosasa purpurea chloroplast
21NC_015826AAAT311255311256412Phyllostachys nigra var. henonis chloroplast
22NC_015826AAAT311578811579912Phyllostachys nigra var. henonis chloroplast
23NC_015831AAAT311222811223912Ferrocalamus rimosivaginus plastid
24NC_015892AAAT311687211688312Magnolia kwangsiensis chloroplast
25NC_015983AAAT3831378314812Cucumis melo subsp. melo chloroplast
26NC_016068AAAT36744675512Nicotiana undulata chloroplast
27NC_016068AAAT3567525676312Nicotiana undulata chloroplast
28NC_016468AAAT3430534306412Boea hygrometrica chloroplast
29NC_016668AAAT36429644012Gossypium raimondii chloroplast
30NC_016670AAAT36515652612Gossypium darwinii chloroplast
31NC_016690AAAT36507651812Gossypium tomentosum chloroplast
32NC_016692AAAT36498650912Gossypium herbaceum subsp. africanum chloroplast
33NC_016699AAAT311248811249912Phyllostachys propinqua chloroplast
34NC_016699AAAT311571711572812Phyllostachys propinqua chloroplast
35NC_016711AAAT36493650412Gossypium mustelinum chloroplast
36NC_016712AAAT36499651012Gossypium arboreum chloroplast
37NC_016733AAAT3328993291012Pedinomonas minor chloroplast
38NC_016735AAAT3872648727512Fucus vesiculosus chloroplast
39NC_016736AAAT314738114739212Ricinus communis chloroplast
40NC_017602AAAT3764177642812Elaeis guineensis chloroplast
41NC_017894AAAT36449646012Gossypium gossypioides chloroplast
42NC_018109AAAT36439645012Gossypium incanum chloroplast
43NC_018110AAAT36466647712Gossypium somalense chloroplast
44NC_018111AAAT36501651212Gossypium capitis-viridis chloroplast
45NC_018112AAAT36466647712Gossypium areysianum chloroplast
46NC_018113AAAT36622663312Gossypium robinsonii chloroplast
47NC_018114AAAT3499814999212Erycina pusilla chloroplast
48NC_018117AAAT3562925630312Datura stramonium chloroplast
49NC_018357AAAT311704311705412Magnolia denudata chloroplast
50NC_018541AAAT3167151672612Elodea canadensis chloroplast
51NC_018565AAAT3647526476312Pachycladon enysii chloroplast
52NC_018766AAAT3557995581012Fragaria vesca subsp. bracteata chloroplast
53NC_018767AAAT3557905580112Fragaria mandshurica plastid
54NC_019601AAAT3557275573812Fragaria chiloensis chloroplast
55NC_019602AAAT3557605577112Fragaria virginiana chloroplast
56NC_019616AAAT314769914771012Vaccinium macrocarpon plastid
57NC_020014AAAT310217410218512Nannochloropsis gaditana chloroplast
58NC_020018AAAT3510715108212Monomorphina aenigmatica strain UTEX1284 chloroplast
59NC_020019AAAT3627086271912Camellia sinensis chloroplast
60NC_020019AAAT312138612139712Camellia sinensis chloroplast
61NC_020316AAAT311714311715412Magnolia officinalis chloroplast
62NC_020317AAAT311709211710312Magnolia officinalis subsp. biloba voucher SC001 chloroplast
63NC_020318AAAT311667711668812Magnolia grandiflora voucher NJ016 chloroplast
64NC_020341AAAT311174911176012Arundinaria gigantea chloroplast
65NC_020363AAAT312077112078212Zingiber spectabile plastid
66NC_020363AAAT312819512820612Zingiber spectabile plastid
67NC_020438AAAT3204802049112Gonium pectorale chloroplast
68NC_020438AAAT312655612656712Gonium pectorale chloroplast
69NC_020460AAAT3549445495512Euglena viridis culture-collection ATCC:PRA110 chloroplast
70NC_020460AAAT3591115912212Euglena viridis culture-collection ATCC:PRA110 chloroplast
71NC_020795AAAT3575595757012Chondrus crispus plastid complete genome
72NC_021075AAAT310612010613112Calliarthron tuberculosum chloroplast
73NC_021101AAAT3363203633112Francoa sonchifolia plastid
74NC_021102AAAT3644296444012Pachycladon cheesemanii chloroplast
75NC_021189AAAT38723873412Pyropia haitanensis voucher PH-38 chloroplast
76NC_021423AAAT315486015487112Catharanthus roseus cultivar Pacifica Punch Halo chloroplast
77NC_021429AAAT3597785978912Cymbidium aloifolium voucher KUN:YJB100604 chloroplast
78NC_021432AAAT3593985940912Cymbidium tracyanum voucher KUN:YJB100606 chloroplast
79NC_021433AAAT3595205953112Cymbidium mannii voucher KUN:YJB100602 chloroplast
80NC_021455AAAT3713797139012Prinsepia utilis plastid
81NC_021618AAAT3566555666612Grateloupia taiwanensis plastid
82NC_021636AAAT3676796769012Glycine tomentella voucher CSIRO:G1403 chloroplast
83NC_021646AAAT3696836969412Glycine stenophita voucher CSIRO:G1974 chloroplast
84NC_021936AAAT3162761628712Najas flexilis chloroplast
85NC_000925AAAT311810411811512 Porphyra purpurea chloroplast
86NC_000932AAAT3651266513712 Arabidopsis thaliana chloroplast
87NC_001568AAAT3660116602212 Epifagus virginiana chloroplast
88NC_001603AAAT3310623107312 Euglena gracilis chloroplast
89NC_001675AAAT3903339034412 Cyanophora paradoxa cyanelle
90NC_001879AAAT3567905680112 Nicotiana tabacum plastid
91NC_002652AAAT3104291044012 Euglena longa plastid
92NC_002652AAAT3380343804512 Euglena longa plastid
93NC_002652AAAT3443414435212 Euglena longa plastid
94NC_002693AAAT311926411927512 Oenothera elata subsp. hookeri plastid plastome I
95NC_004115AAAT3259492596012 Chaetosphaeridium globosum chloroplast
96NC_004561AAAT3564415645212 Atropa belladonna chloroplast
97NC_004823AAAT3121641217512 Eimeria tenella strain Penn State apicoplast
98NC_004993AAAT34264427512 Calycanthus floridus var. glaucus chloroplast
99NC_005087AAAT311925111926212 Physcomitrella patens subsp. patens chloroplast
100NC_006137AAAT3299362994712 Gracilaria tenuistipitata var. liui chloroplast
101NC_006137AAAT3884208843112 Gracilaria tenuistipitata var. liui chloroplast
102NC_007407AAAT3653036531412 Acorus calamus plastid
103NC_007500AAAT3567885679912 Nicotiana sylvestris chloroplast
104NC_007602AAAT36720673112 Nicotiana tomentosiformis chloroplast
105NC_007758AAAT3222012221212 Theileria parva strain Muguga apicoplast
106NC_007932AAAT311924811925912 Porphyra yezoensis chloroplast
107NC_007944AAAT36504651512 Gossypium hirsutum chloroplast
108NC_008097AAAT3650846509512 Chara vulgaris chloroplast
109NC_008097AAAT310699710700812 Chara vulgaris chloroplast
110NC_008100AAAT3271782718912 Helicosporidium sp. ex Simulium jonesii plastid
111NC_008101AAAT3284922850312 Scenedesmus obliquus chloroplast
112NC_008114AAAT316117916119012 Pseudendoclonium akinetum chloroplast
113NC_008117AAAT310999511000612 Zygnema circumcarinatum chloroplast
114NC_008117AAAT314392114393212 Zygnema circumcarinatum chloroplast
115NC_008235AAAT3654876549812 Populus alba chloroplast
116NC_008334AAAT3311613117212 Citrus sinensis chloroplast
117NC_008334AAAT3720537206412 Citrus sinensis chloroplast
118NC_008335AAAT34528453912 Platanus occidentalis chloroplast
119NC_008336AAAT314158614159712 Nandina domestica chloroplast
120NC_008359AAAT3464344644512 Morus indica chloroplast
121NC_008372AAAT3417304174112 Stigeoclonium helveticum chloroplast
122NC_008372AAAT3419414195212 Stigeoclonium helveticum chloroplast
123NC_008372AAAT3435824359312 Stigeoclonium helveticum chloroplast
124NC_008372AAAT3441364414712 Stigeoclonium helveticum chloroplast
125NC_008372AAAT3498704988112 Stigeoclonium helveticum chloroplast
126NC_008372AAAT3522635227412 Stigeoclonium helveticum chloroplast
127NC_008372AAAT3551095512012 Stigeoclonium helveticum chloroplast
128NC_008372AAAT3588015881212 Stigeoclonium helveticum chloroplast
129NC_008372AAAT3590335904412 Stigeoclonium helveticum chloroplast
130NC_008372AAAT3621786218912 Stigeoclonium helveticum chloroplast
131NC_008372AAAT3752547526512 Stigeoclonium helveticum chloroplast
132NC_008372AAAT3875328754312 Stigeoclonium helveticum chloroplast
133NC_008372AAAT3904349044512 Stigeoclonium helveticum chloroplast
134NC_008372AAAT3906059061612 Stigeoclonium helveticum chloroplast
135NC_008372AAAT3930909310112 Stigeoclonium helveticum chloroplast
136NC_008372AAAT3931499316012 Stigeoclonium helveticum chloroplast
137NC_008372AAAT3933349334512 Stigeoclonium helveticum chloroplast
138NC_008372AAAT3973419735212 Stigeoclonium helveticum chloroplast
139NC_008372AAAT3981619817212 Stigeoclonium helveticum chloroplast
140NC_008372AAAT311837711838812 Stigeoclonium helveticum chloroplast
141NC_008372AAAT311854111855212 Stigeoclonium helveticum chloroplast
142NC_008372AAAT312483412484512 Stigeoclonium helveticum chloroplast
143NC_008372AAAT312498212499312 Stigeoclonium helveticum chloroplast
144NC_008372AAAT313225613226712 Stigeoclonium helveticum chloroplast
145NC_008372AAAT314217114218212 Stigeoclonium helveticum chloroplast
146NC_008372AAAT314305914307012 Stigeoclonium helveticum chloroplast
147NC_008372AAAT314982814983912 Stigeoclonium helveticum chloroplast
148NC_008372AAAT315885215886312 Stigeoclonium helveticum chloroplast
149NC_008372AAAT316058116059212 Stigeoclonium helveticum chloroplast
150NC_008372AAAT316084216085312 Stigeoclonium helveticum chloroplast
151NC_008372AAAT316529916531012 Stigeoclonium helveticum chloroplast
152NC_008372AAAT317186417187512 Stigeoclonium helveticum chloroplast
153NC_008372AAAT319015819016912 Stigeoclonium helveticum chloroplast
154NC_008372AAAT320573420574512 Stigeoclonium helveticum chloroplast
155NC_008372AAAT320746920748012 Stigeoclonium helveticum chloroplast
156NC_008372AAAT321915721916812 Stigeoclonium helveticum chloroplast
157NC_008372AAAT321919321920412 Stigeoclonium helveticum chloroplast
158NC_008372AAAT321935721936812 Stigeoclonium helveticum chloroplast
159NC_008456AAAT3733367334712 Drimys granadensis chloroplast
160NC_008456AAAT3854578546812 Drimys granadensis chloroplast
161NC_008535AAAT3581335814412 Coffea arabica chloroplast
162NC_008589AAAT310079710080812 Thalassiosira pseudonana chloroplast
163NC_008641AAAT36519653012 Gossypium barbadense chloroplast
164NC_009143AAAT3659156592612 Populus trichocarpa chloroplast
165NC_009259AAAT312389112390212 Phaseolus vulgaris chloroplast
166NC_009267AAAT3648346484512 Olimarabidopsis pumila chloroplast
167NC_009267AAAT3673956740612 Olimarabidopsis pumila chloroplast
168NC_009269AAAT3669226693312 Barbarea verna chloroplast
169NC_009272AAAT3635576356812 Draba nemorosa chloroplast
170NC_009273AAAT3353303534112 Lepidium virginicum chloroplast
171NC_009273AAAT3648976490812 Lepidium virginicum chloroplast
172NC_009598AAAT3706307064112 Chloranthus spicatus chloroplast
173NC_009600AAAT313474913476012 Illicium oligandrum chloroplast
174NC_009601AAAT38910892112 Dioscorea elephantipes chloroplast
175NC_009681AAAT3144321444312 Leptosira terrestris chloroplast
176NC_009681AAAT3676016761212 Leptosira terrestris chloroplast
177NC_009681AAAT3859618597212 Leptosira terrestris chloroplast
178NC_009681AAAT316830516831612 Leptosira terrestris chloroplast
179NC_009765AAAT31839185012 Cuscuta gronovii chloroplast
180NC_009949AAAT31849186012 Cuscuta obtusiflora chloroplast
181NC_009963AAAT3502615027212 Cuscuta exaltata chloroplast
182NC_010093AAAT3649796499012 Acorus americanus chloroplast
183NC_010323AAAT3721457215612 Carica papaya chloroplast
184NC_010361AAAT311867111868212 Oenothera biennis chloroplast
185NC_010442AAAT313187813188912 Trachelium caeruleum chloroplast
186NC_010601AAAT31937194812 Guizotia abyssinica chloroplast
187NC_011031AAAT318150618151712 Oedogonium cardiacum chloroplast
188NC_011600AAAT3381423815312 Vaucheria litorea chloroplast
189NC_012224AAAT3334043341512 Jatropha curcas chloroplast
190NC_012224AAAT3712537126412 Jatropha curcas chloroplast
191NC_013498AAAT3239032391412 Ectocarpus siliculosus chloroplast