Chloroplast Motifs - Perfect TTTA Repeats
| S.No | Sequence ID | Motif | Iterations | Start | End | Tract Length | Sequence Name |
| 1 | NC_007499 | TTTA | 4 | 8949 | 8964 | 16 | Phalaenopsis aphrodite subsp. formosana chloroplast |
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| 2 | NC_011087 | TTTA | 3 | 517927 | 517938 | 12 | Paulinella chromatophora chromatophore |
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| 3 | NC_014267 | TTTA | 3 | 55023 | 55034 | 12 | Kryptoperidinium foliaceum chloroplast |
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| 4 | NC_014287 | TTTA | 3 | 10454 | 10465 | 12 | Durinskia baltica chloroplast |
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| 5 | NC_014674 | TTTA | 3 | 52992 | 53003 | 12 | Castanea mollissima chloroplast |
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| 6 | NC_014676 | TTTA | 3 | 51810 | 51821 | 12 | Theobroma cacao chloroplast |
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| 7 | NC_014676 | TTTA | 3 | 52298 | 52309 | 12 | Theobroma cacao chloroplast |
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| 8 | NC_014697 | TTTA | 3 | 30781 | 30792 | 12 | Prunus persica chloroplast |
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| 9 | NC_014699 | TTTA | 3 | 93098 | 93109 | 12 | Equisetum arvense chloroplast |
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| 10 | NC_014807 | TTTA | 3 | 5003 | 5014 | 12 | Corynocarpus laevigata chloroplast |
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| 11 | NC_014807 | TTTA | 3 | 50411 | 50422 | 12 | Corynocarpus laevigata chloroplast |
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| 12 | NC_014808 | TTTA | 3 | 3897 | 3908 | 12 | Thalassiosira oceanica CCMP1005 chloroplast |
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| 13 | NC_014808 | TTTA | 3 | 31987 | 31998 | 12 | Thalassiosira oceanica CCMP1005 chloroplast |
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| 14 | NC_014808 | TTTA | 3 | 54459 | 54470 | 12 | Thalassiosira oceanica CCMP1005 chloroplast |
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| 15 | NC_015083 | TTTA | 3 | 48984 | 48995 | 12 | Erodium carvifolium chloroplast |
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| 16 | NC_015083 | TTTA | 3 | 86998 | 87009 | 12 | Erodium carvifolium chloroplast |
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| 17 | NC_015113 | TTTA | 3 | 118647 | 118658 | 12 | Anthriscus cerefolium chloroplast |
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| 18 | NC_015139 | TTTA | 3 | 6852 | 6863 | 12 | Brassica rapa subsp. pekinensis chloroplast |
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| 19 | NC_015308 | TTTA | 3 | 54430 | 54441 | 12 | Hevea brasiliensis chloroplast |
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| 20 | NC_015645 | TTTA | 3 | 99277 | 99288 | 12 | Schizomeris leibleinii chloroplast |
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| 21 | NC_015803 | TTTA | 3 | 74334 | 74345 | 12 | Indocalamus longiauritus plastid |
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| 22 | NC_015817 | TTTA | 3 | 74287 | 74298 | 12 | Phyllostachys edulis chloroplast |
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| 23 | NC_015820 | TTTA | 3 | 74329 | 74340 | 12 | Acidosasa purpurea chloroplast |
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| 24 | NC_015826 | TTTA | 3 | 74295 | 74306 | 12 | Phyllostachys nigra var. henonis chloroplast |
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| 25 | NC_015830 | TTTA | 3 | 74063 | 74074 | 12 | Bambusa emeiensis chloroplast |
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| 26 | NC_015831 | TTTA | 3 | 74072 | 74083 | 12 | Ferrocalamus rimosivaginus plastid |
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| 27 | NC_015891 | TTTA | 3 | 87106 | 87117 | 12 | Spirodela polyrhiza chloroplast |
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| 28 | NC_015894 | TTTA | 3 | 46893 | 46904 | 12 | Wolffiella lingulata chloroplast |
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| 29 | NC_015899 | TTTA | 3 | 46072 | 46083 | 12 | Wolffia australiana chloroplast |
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| 30 | NC_015983 | TTTA | 3 | 28652 | 28663 | 12 | Cucumis melo subsp. melo chloroplast |
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| 31 | NC_015996 | TTTA | 3 | 31870 | 31881 | 12 | Pyrus pyrifolia chloroplast |
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| 32 | NC_016063 | TTTA | 3 | 90829 | 90840 | 12 | Cephalotaxus wilsoniana chloroplast DNA |
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| 33 | NC_016068 | TTTA | 3 | 31119 | 31130 | 12 | Nicotiana undulata chloroplast |
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| 34 | NC_016471 | TTTA | 3 | 3020 | 3031 | 12 | Neottia nidus-avis plastid |
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| 35 | NC_016668 | TTTA | 3 | 129856 | 129867 | 12 | Gossypium raimondii chloroplast |
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| 36 | NC_016670 | TTTA | 3 | 130042 | 130053 | 12 | Gossypium darwinii chloroplast |
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| 37 | NC_016677 | TTTA | 3 | 4154 | 4165 | 12 | Leersia tisserantii plastid |
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| 38 | NC_016677 | TTTA | 3 | 73124 | 73135 | 12 | Leersia tisserantii plastid |
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| 39 | NC_016690 | TTTA | 3 | 130084 | 130095 | 12 | Gossypium tomentosum chloroplast |
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| 40 | NC_016692 | TTTA | 3 | 129958 | 129969 | 12 | Gossypium herbaceum subsp. africanum chloroplast |
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| 41 | NC_016699 | TTTA | 3 | 74293 | 74304 | 12 | Phyllostachys propinqua chloroplast |
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| 42 | NC_016711 | TTTA | 3 | 129974 | 129985 | 12 | Gossypium mustelinum chloroplast |
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| 43 | NC_016712 | TTTA | 3 | 129876 | 129887 | 12 | Gossypium arboreum chloroplast |
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| 44 | NC_016718 | TTTA | 3 | 73204 | 73215 | 12 | Rhynchoryza subulata plastid |
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| 45 | NC_016727 | TTTA | 3 | 66851 | 66862 | 12 | Silene vulgaris chloroplast |
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| 46 | NC_016728 | TTTA | 3 | 57024 | 57035 | 12 | Silene noctiflora chloroplast |
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| 47 | NC_016729 | TTTA | 3 | 65055 | 65066 | 12 | Silene conica chloroplast |
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| 48 | NC_016730 | TTTA | 3 | 44719 | 44730 | 12 | Silene latifolia chloroplast |
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| 49 | NC_016730 | TTTA | 3 | 67303 | 67314 | 12 | Silene latifolia chloroplast |
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| 50 | NC_016731 | TTTA | 3 | 20698 | 20709 | 12 | Synedra acus chloroplast |
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| 51 | NC_016734 | TTTA | 3 | 6846 | 6857 | 12 | Brassica napus chloroplast |
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| 52 | NC_016736 | TTTA | 3 | 34982 | 34993 | 12 | Ricinus communis chloroplast |
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| 53 | NC_016921 | TTTA | 3 | 30674 | 30685 | 12 | Pentactina rupicola chloroplast |
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| 54 | NC_016927 | TTTA | 3 | 71716 | 71727 | 12 | Oryza meridionalis chloroplast |
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| 55 | NC_017006 | TTTA | 3 | 7240 | 7251 | 12 | Mankyua chejuensis chloroplast |
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| 56 | NC_017602 | TTTA | 3 | 83465 | 83476 | 12 | Elaeis guineensis chloroplast |
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| 57 | NC_017754 | TTTA | 3 | 56210 | 56221 | 12 | Eutreptiella gymnastica plastid |
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| 58 | NC_017835 | TTTA | 3 | 71705 | 71716 | 12 | Oryza rufipogon chloroplast |
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| 59 | NC_018109 | TTTA | 3 | 128976 | 128987 | 12 | Gossypium incanum chloroplast |
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| 60 | NC_018110 | TTTA | 3 | 129277 | 129288 | 12 | Gossypium somalense chloroplast |
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| 61 | NC_018111 | TTTA | 3 | 129153 | 129164 | 12 | Gossypium capitis-viridis chloroplast |
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| 62 | NC_018112 | TTTA | 3 | 129309 | 129320 | 12 | Gossypium areysianum chloroplast |
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| 63 | NC_018113 | TTTA | 3 | 129634 | 129645 | 12 | Gossypium robinsonii chloroplast |
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| 64 | NC_018117 | TTTA | 3 | 30954 | 30965 | 12 | Datura stramonium chloroplast |
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| 65 | NC_020092 | TTTA | 3 | 50282 | 50293 | 12 | Chrysanthemum x morifolium chloroplast |
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| 66 | NC_020146 | TTTA | 3 | 88572 | 88583 | 12 | Equisetum hyemale chloroplast |
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| 67 | NC_020147 | TTTA | 3 | 112370 | 112381 | 12 | Ophioglossum californicum chloroplast |
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| 68 | NC_020152 | TTTA | 3 | 52998 | 53009 | 12 | Quercus rubra plastid |
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| 69 | NC_020320 | TTTA | 3 | 50303 | 50314 | 12 | Chrysanthemum indicum voucher HeN001 chloroplast |
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| 70 | NC_020321 | TTTA | 3 | 97095 | 97106 | 12 | Taxus mairei voucher NN014 chloroplast |
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| 71 | NC_020341 | TTTA | 3 | 73688 | 73699 | 12 | Arundinaria gigantea chloroplast |
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| 72 | NC_020362 | TTTA | 3 | 125288 | 125299 | 12 | Heliconia collinsiana plastid |
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| 73 | NC_020363 | TTTA | 3 | 13439 | 13450 | 12 | Zingiber spectabile plastid |
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| 74 | NC_020364 | TTTA | 3 | 58406 | 58417 | 12 | Pseudophoenix vinifera plastid |
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| 75 | NC_020365 | TTTA | 3 | 123416 | 123427 | 12 | Calamus caryotoides plastid |
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| 76 | NC_020367 | TTTA | 3 | 13091 | 13102 | 12 | Dasypogon bromeliifolius plastid |
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| 77 | NC_020371 | TTTA | 3 | 82467 | 82478 | 12 | Pavlova lutheri chloroplast |
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| 78 | NC_020607 | TTTA | 3 | 50273 | 50284 | 12 | Artemisia frigida chloroplast |
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| 79 | NC_021075 | TTTA | 3 | 95465 | 95476 | 12 | Calliarthron tuberculosum chloroplast |
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| 80 | NC_021075 | TTTA | 3 | 98783 | 98794 | 12 | Calliarthron tuberculosum chloroplast |
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| 81 | NC_021101 | TTTA | 3 | 43898 | 43909 | 12 | Francoa sonchifolia plastid |
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| 82 | NC_021101 | TTTA | 3 | 44889 | 44900 | 12 | Francoa sonchifolia plastid |
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| 83 | NC_021372 | TTTA | 3 | 74354 | 74365 | 12 | Pharus latifolius chloroplast |
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| 84 | NC_021426 | TTTA | 3 | 85997 | 86008 | 12 | Trochodendron aralioides chloroplast |
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| 85 | NC_021439 | TTTA | 3 | 41408 | 41419 | 12 | Pinus massoniana chloroplast |
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| 86 | NC_021440 | TTTA | 3 | 42146 | 42157 | 12 | Pinus taeda chloroplast |
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| 87 | NC_021449 | TTTA | 3 | 49795 | 49806 | 12 | Utricularia gibba chloroplast |
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| 88 | NC_021449 | TTTA | 3 | 96000 | 96011 | 12 | Utricularia gibba chloroplast |
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| 89 | NC_021455 | TTTA | 3 | 66648 | 66659 | 12 | Prinsepia utilis plastid |
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| 90 | NC_021618 | TTTA | 3 | 71757 | 71768 | 12 | Grateloupia taiwanensis plastid |
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| 91 | NC_021636 | TTTA | 3 | 117748 | 117759 | 12 | Glycine tomentella voucher CSIRO:G1403 chloroplast |
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| 92 | NC_021646 | TTTA | 3 | 117802 | 117813 | 12 | Glycine stenophita voucher CSIRO:G1974 chloroplast |
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| 93 | NC_021647 | TTTA | 3 | 117550 | 117561 | 12 | Glycine canescens voucher CSIRO:G1232 chloroplast |
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| 94 | NC_021648 | TTTA | 3 | 117791 | 117802 | 12 | Glycine dolichocarpa voucher CSIRO:G1134 chloroplast |
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| 95 | NC_021649 | TTTA | 3 | 118038 | 118049 | 12 | Glycine falcata voucher CSIRO:G1718 chloroplast |
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| 96 | NC_021650 | TTTA | 3 | 117807 | 117818 | 12 | Glycine syndetika voucher CSIRO:G1300 chloroplast |
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| 97 | NC_022136 | TTTA | 3 | 57762 | 57773 | 12 | Lygodium japonicum chloroplast |
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| 98 | NC_001319 | TTTA | 3 | 76223 | 76234 | 12 | Marchantia polymorpha chloroplast |
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| 99 | NC_001319 | TTTA | 3 | 79756 | 79767 | 12 | Marchantia polymorpha chloroplast |
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| 100 | NC_001319 | TTTA | 3 | 95400 | 95411 | 12 | Marchantia polymorpha chloroplast |
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| 101 | NC_001320 | TTTA | 3 | 71703 | 71714 | 12 | Oryza sativa Japonica Group plastid |
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| 102 | NC_001631 | TTTA | 3 | 41453 | 41464 | 12 | Pinus thunbergii chloroplast |
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| 103 | NC_001879 | TTTA | 3 | 31113 | 31124 | 12 | Nicotiana tabacum plastid |
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| 104 | NC_002202 | TTTA | 3 | 67103 | 67114 | 12 | Spinacia oleracea plastid |
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| 105 | NC_002652 | TTTA | 3 | 12909 | 12920 | 12 | Euglena longa plastid |
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| 106 | NC_002652 | TTTA | 3 | 72633 | 72644 | 12 | Euglena longa plastid |
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| 107 | NC_002693 | TTTA | 3 | 73288 | 73299 | 12 | Oenothera elata subsp. hookeri plastid plastome I |
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| 108 | NC_003386 | TTTA | 3 | 66621 | 66632 | 12 | Psilotum nudum chloroplast |
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| 109 | NC_004115 | TTTA | 3 | 88536 | 88547 | 12 | Chaetosphaeridium globosum chloroplast |
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| 110 | NC_004543 | TTTA | 3 | 46805 | 46816 | 12 | Anthoceros formosae chloroplast |
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| 111 | NC_004561 | TTTA | 3 | 30881 | 30892 | 12 | Atropa belladonna chloroplast |
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| 112 | NC_004677 | TTTA | 3 | 41237 | 41248 | 12 | Pinus koraiensis chloroplast |
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| 113 | NC_005087 | TTTA | 3 | 7010 | 7021 | 12 | Physcomitrella patens subsp. patens chloroplast |
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| 114 | NC_005087 | TTTA | 3 | 65662 | 65673 | 12 | Physcomitrella patens subsp. patens chloroplast |
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| 115 | NC_005973 | TTTA | 3 | 71634 | 71645 | 12 | Oryza nivara chloroplast |
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| 116 | NC_007144 | TTTA | 3 | 28668 | 28679 | 12 | Cucumis sativus chloroplast |
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| 117 | NC_007144 | TTTA | 3 | 32948 | 32959 | 12 | Cucumis sativus chloroplast |
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| 118 | NC_007144 | TTTA | 3 | 32970 | 32981 | 12 | Cucumis sativus chloroplast |
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| 119 | NC_007500 | TTTA | 3 | 31111 | 31122 | 12 | Nicotiana sylvestris chloroplast |
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| 120 | NC_007602 | TTTA | 3 | 31046 | 31057 | 12 | Nicotiana tomentosiformis chloroplast |
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| 121 | NC_007898 | TTTA | 3 | 30689 | 30700 | 12 | Solanum lycopersicum chloroplast |
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| 122 | NC_007942 | TTTA | 3 | 117184 | 117195 | 12 | Glycine max chloroplast |
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| 123 | NC_007943 | TTTA | 3 | 30718 | 30729 | 12 | Solanum bulbocastanum chloroplast |
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| 124 | NC_007944 | TTTA | 3 | 129959 | 129970 | 12 | Gossypium hirsutum chloroplast |
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| 125 | NC_007957 | TTTA | 3 | 52715 | 52726 | 12 | Vitis vinifera chloroplast |
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| 126 | NC_008096 | TTTA | 3 | 30837 | 30848 | 12 | Solanum tuberosum chloroplast |
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| 127 | NC_008097 | TTTA | 3 | 5335 | 5346 | 12 | Chara vulgaris chloroplast |
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| 128 | NC_008097 | TTTA | 3 | 153112 | 153123 | 12 | Chara vulgaris chloroplast |
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| 129 | NC_008101 | TTTA | 3 | 71408 | 71419 | 12 | Scenedesmus obliquus chloroplast |
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| 130 | NC_008116 | TTTA | 3 | 69648 | 69659 | 12 | Staurastrum punctulatum chloroplast |
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| 131 | NC_008155 | TTTA | 3 | 71655 | 71666 | 12 | Oryza sativa Indica Group chloroplast |
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| 132 | NC_008335 | TTTA | 3 | 66531 | 66542 | 12 | Platanus occidentalis chloroplast |
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| 133 | NC_008456 | TTTA | 3 | 8948 | 8959 | 12 | Drimys granadensis chloroplast |
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| 134 | NC_008456 | TTTA | 3 | 13844 | 13855 | 12 | Drimys granadensis chloroplast |
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| 135 | NC_008457 | TTTA | 3 | 52905 | 52916 | 12 | Piper cenocladum chloroplast |
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| 136 | NC_008589 | TTTA | 3 | 27248 | 27259 | 12 | Thalassiosira pseudonana chloroplast |
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| 137 | NC_008788 | TTTA | 3 | 31654 | 31665 | 12 | Nuphar advena chloroplast |
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| 138 | NC_008822 | TTTA | 3 | 85131 | 85142 | 12 | Chlorokybus atmophyticus chloroplast |
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| 139 | NC_009274 | TTTA | 3 | 77123 | 77134 | 12 | Lobularia maritima chloroplast |
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| 140 | NC_009598 | TTTA | 3 | 129299 | 129310 | 12 | Chloranthus spicatus chloroplast |
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| 141 | NC_009599 | TTTA | 3 | 51802 | 51813 | 12 | Buxus microphylla chloroplast |
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| 142 | NC_009681 | TTTA | 3 | 112495 | 112506 | 12 | Leptosira terrestris chloroplast |
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| 143 | NC_009681 | TTTA | 3 | 112508 | 112519 | 12 | Leptosira terrestris chloroplast |
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| 144 | NC_009766 | TTTA | 3 | 3994 | 4005 | 12 | Cuscuta reflexa chloroplast |
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| 145 | NC_009766 | TTTA | 3 | 5753 | 5764 | 12 | Cuscuta reflexa chloroplast |
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| 146 | NC_009949 | TTTA | 3 | 46978 | 46989 | 12 | Cuscuta obtusiflora chloroplast |
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| 147 | NC_010109 | TTTA | 3 | 8062 | 8073 | 12 | Lemna minor chloroplast |
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| 148 | NC_010109 | TTTA | 3 | 14626 | 14637 | 12 | Lemna minor chloroplast |
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| 149 | NC_010109 | TTTA | 3 | 31352 | 31363 | 12 | Lemna minor chloroplast |
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| 150 | NC_010323 | TTTA | 3 | 54825 | 54836 | 12 | Carica papaya chloroplast |
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| 151 | NC_010358 | TTTA | 3 | 72305 | 72316 | 12 | Oenothera argillicola chloroplast |
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| 152 | NC_010360 | TTTA | 3 | 73381 | 73392 | 12 | Oenothera glazioviana chloroplast |
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| 153 | NC_010361 | TTTA | 3 | 4890 | 4901 | 12 | Oenothera biennis chloroplast |
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| 154 | NC_010361 | TTTA | 3 | 72808 | 72819 | 12 | Oenothera biennis chloroplast |
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| 155 | NC_010362 | TTTA | 3 | 71688 | 71699 | 12 | Oenothera parviflora chloroplast |
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| 156 | NC_010442 | TTTA | 3 | 113157 | 113168 | 12 | Trachelium caeruleum chloroplast |
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| 157 | NC_010548 | TTTA | 3 | 122307 | 122318 | 12 | Cryptomeria japonica chloroplast |
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| 158 | NC_010772 | TTTA | 3 | 41255 | 41266 | 12 | Heterosigma akashiwo chloroplast |
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| 159 | NC_010772 | TTTA | 3 | 131306 | 131317 | 12 | Heterosigma akashiwo chloroplast |
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| 160 | NC_011031 | TTTA | 3 | 173939 | 173950 | 12 | Oedogonium cardiacum chloroplast |
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| 161 | NC_011153 | TTTA | 3 | 41652 | 41663 | 12 | Pinus contorta chloroplast |
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| 162 | NC_011155 | TTTA | 3 | 40972 | 40983 | 12 | Pinus krempfii chloroplast |
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| 163 | NC_011600 | TTTA | 3 | 52634 | 52645 | 12 | Vaucheria litorea chloroplast |
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| 164 | NC_011600 | TTTA | 3 | 76108 | 76119 | 12 | Vaucheria litorea chloroplast |
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| 165 | NC_011828 | TTTA | 3 | 84353 | 84364 | 12 | Trifolium subterraneum chloroplast |
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| 166 | NC_012052 | TTTA | 3 | 59150 | 59161 | 12 | Syntrichia ruralis chloroplast |
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| 167 | NC_012224 | TTTA | 3 | 55951 | 55962 | 12 | Jatropha curcas chloroplast |
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| 168 | NC_012927 | TTTA | 3 | 73961 | 73972 | 12 | Bambusa oldhamii chloroplast |
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| 169 | NC_013088 | TTTA | 3 | 74062 | 74073 | 12 | Dendrocalamus latiflorus chloroplast |
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| 170 | NC_013273 | TTTA | 3 | 4165 | 4176 | 12 | Coix lacryma-jobi chloroplast |
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| 171 | NC_013498 | TTTA | 3 | 137394 | 137405 | 12 | Ectocarpus siliculosus chloroplast |
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| 172 | NC_013823 | TTTA | 3 | 60687 | 60698 | 12 | Typha latifolia chloroplast |
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