All Repeats of Theobroma cacao chloroplast
Click on Table Heading To Sort Results Accordingly
S.No. | Genome ID | SSR | SSR Type | Start | End | Tract Length | Primer Design |
---|---|---|---|---|---|---|---|
1 | NC_014676 | (T)10attttcattttatagaaattatatattagtccataacggacgtataatactaaataaaatccaataaaacgaaatcaaactcattaaaaatcc(T)11 | c | 268 | 381 | 114 | Design Primer |
2 | NC_014676 | (T)10 | p1 | 1780 | 1789 | 10 | Design Primer |
3 | NC_014676 | (A)12 | p1 | 3966 | 3977 | 12 | Design Primer |
4 | NC_014676 | (T)10 | p1 | 4718 | 4727 | 10 | Design Primer |
5 | NC_014676 | (T)12 | p1 | 5041 | 5052 | 12 | Design Primer |
6 | NC_014676 | (A)13 | p1 | 5715 | 5727 | 13 | Design Primer |
7 | NC_014676 | (TAA)4 | p3 | 6721 | 6732 | 12 | Design Primer |
8 | NC_014676 | (A)11 | p1 | 6920 | 6930 | 11 | Design Primer |
9 | NC_014676 | (TTA)6 | p3 | 10253 | 10270 | 18 | Design Primer |
10 | NC_014676 | (T)10 | p1 | 12351 | 12360 | 10 | Design Primer |
11 | NC_014676 | (T)10 | p1 | 12725 | 12734 | 10 | Design Primer |
12 | NC_014676 | (A)11 | p1 | 13318 | 13328 | 11 | Design Primer |
13 | NC_014676 | (T)13cttttttaataattaataaattattaat(TTA)4 | c | 13439 | 13491 | 53 | Design Primer |
14 | NC_014676 | (C)10 | p1 | 14670 | 14679 | 10 | Design Primer |
15 | NC_014676 | (T)10aagt(A)11 | c | 17024 | 17048 | 25 | Design Primer |
16 | NC_014676 | (T)13 | p1 | 19276 | 19288 | 13 | Design Primer |
17 | NC_014676 | (A)10 | p1 | 23318 | 23327 | 10 | Design Primer |
18 | NC_014676 | (TATT)3(T)11* | c* | 23789 | 23809 | 21 | Design Primer |
19 | NC_014676 | (T)12 | p1 | 27020 | 27031 | 12 | Design Primer |
20 | NC_014676 | (A)10 | p1 | 27960 | 27969 | 10 | Design Primer |
21 | NC_014676 | (A)10 | p1 | 28555 | 28564 | 10 | Design Primer |
22 | NC_014676 | (A)11ttcttcctaaattttctatttcgatgaaccagctcttaccagagttatatatggacaatgagggataaggaacccccccc(T)10 | c | 30082 | 30182 | 101 | Design Primer |
23 | NC_014676 | (TA)6 | p2 | 33124 | 33135 | 12 | Design Primer |
24 | NC_014676 | (TGAAA)3 | p5 | 34131 | 34145 | 15 | Design Primer |
25 | NC_014676 | (AAT)4 | p3 | 38093 | 38104 | 12 | Design Primer |
26 | NC_014676 | (ATT)4 | p3 | 38291 | 38302 | 12 | Design Primer |
27 | NC_014676 | (T)10 | p1 | 44449 | 44458 | 10 | Design Primer |
28 | NC_014676 | (AT)8 | p2 | 44593 | 44608 | 16 | Design Primer |
29 | NC_014676 | (T)10caatagtcttttttttctattctgaatcatgtgtctttttcctaagactgagagcggtaaagtaaataaagt(A)10 | c | 46800 | 46891 | 92 | Design Primer |
30 | NC_014676 | (A)11 | p1 | 47201 | 47211 | 11 | Design Primer |
31 | NC_014676 | (A)11 | p1 | 50262 | 50272 | 11 | Design Primer |
32 | NC_014676 | (AAAT)3 | p4 | 50544 | 50555 | 12 | Design Primer |
33 | NC_014676 | (T)11 | p1 | 51563 | 51573 | 11 | Design Primer |
34 | NC_014676 | (TTTA)3 | p4 | 51810 | 51821 | 12 | Design Primer |
35 | NC_014676 | (TTTA)3 | p4 | 52298 | 52309 | 12 | Design Primer |
36 | NC_014676 | (AT)6 | p2 | 54696 | 54707 | 12 | Design Primer |
37 | NC_014676 | (T)10 | p1 | 55540 | 55549 | 10 | Design Primer |
38 | NC_014676 | (T)11 | p1 | 58477 | 58487 | 11 | Design Primer |
39 | NC_014676 | (TAGT)3ttatcagaatcaaagtcaaagcccattatgcgggctttggctttgtgacataaaatggaattgtcgaaaaagaattatgtggata(ATT)4 | c | 63089 | 63197 | 109 | Design Primer |
40 | NC_014676 | (AAT)4 | p3 | 63534 | 63545 | 12 | Design Primer |
41 | NC_014676 | (AT)6 | p2 | 65622 | 65633 | 12 | Design Primer |
42 | NC_014676 | (A)10 | p1 | 70183 | 70192 | 10 | Design Primer |
43 | NC_014676 | (T)14 | p1 | 70968 | 70981 | 14 | Design Primer |
44 | NC_014676 | (TATT)3 | p4 | 72227 | 72238 | 12 | Design Primer |
45 | NC_014676 | (T)10c(A)10 | c | 75414 | 75434 | 21 | Design Primer |
46 | NC_014676 | (A)10 | p1 | 75609 | 75618 | 10 | Design Primer |
47 | NC_014676 | (T)12atagtgggctctttctaacttataatttctaatgaaggggctttttcttccatttt(TTAAA)3aattaaattaaagaaagatgagttttggcctgttttcctataatatagaaaaaatttgctaaactatcgcacaaacttttcattgatcta(T)10 | c | 76149 | 76331 | 183 | Design Primer |
48 | NC_014676 | (T)10 | p1 | 76512 | 76521 | 10 | Design Primer |
49 | NC_014676 | (A)12 | p1 | 81457 | 81468 | 12 | Design Primer |
50 | NC_014676 | (T)11 | p1 | 81817 | 81827 | 11 | Design Primer |
51 | NC_014676 | (A)10 | p1 | 82970 | 82979 | 10 | Design Primer |
52 | NC_014676 | (T)13 | p1 | 83223 | 83235 | 13 | Design Primer |
53 | NC_014676 | (T)10 | p1 | 85108 | 85117 | 10 | Design Primer |
54 | NC_014676 | (T)10 | p1 | 89382 | 89391 | 10 | Design Primer |
55 | NC_014676 | (T)11 | p1 | 104411 | 104421 | 11 | Design Primer |
56 | NC_014676 | (TATTA)3 | p5 | 104978 | 104992 | 15 | Design Primer |
57 | NC_014676 | (TAAAG)12 | p5 | 110091 | 110150 | 60 | Design Primer |
58 | NC_014676 | (T)10 | p1 | 113764 | 113773 | 10 | Design Primer |
59 | NC_014676 | (A)11gaattc(T)11 | c | 117303 | 117330 | 28 | Design Primer |
60 | NC_014676 | (T)11 | p1 | 117651 | 117661 | 11 | Design Primer |
61 | NC_014676 | (A)10 | p1 | 117955 | 117964 | 10 | Design Primer |
62 | NC_014676 | (T)10 | p1 | 118489 | 118498 | 10 | Design Primer |
63 | NC_014676 | (AT)7 | p2 | 118644 | 118657 | 14 | Design Primer |
64 | NC_014676 | (ATAA)3 | p4 | 119332 | 119343 | 12 | Design Primer |
65 | NC_014676 | (TA)6 | p2 | 120706 | 120717 | 12 | Design Primer |
66 | NC_014676 | (TTGA)3 | p4 | 123130 | 123141 | 12 | Design Primer |
67 | NC_014676 | (T)10 | p1 | 124253 | 124262 | 10 | Design Primer |
68 | NC_014676 | (A)10t(A)10 | c | 125982 | 126002 | 21 | Design Primer |
69 | NC_014676 | (T)10 | p1 | 129129 | 129138 | 10 | Design Primer |
70 | NC_014676 | (T)10 | p1 | 131076 | 131085 | 10 | Design Primer |
71 | NC_014676 | (CATT)3 | p4 | 131256 | 131267 | 12 | Design Primer |
72 | NC_014676 | (T)10 | p1 | 132211 | 132220 | 10 | Design Primer |
73 | NC_014676 | (T)11 | p1 | 133464 | 133474 | 11 | Design Primer |
74 | NC_014676 | (T)10 | p1 | 133988 | 133997 | 10 | Design Primer |
75 | NC_014676 | (T)13 | p1 | 134107 | 134119 | 13 | Design Primer |
76 | NC_014676 | (C)10 | p1 | 134237 | 134246 | 10 | Design Primer |
77 | NC_014676 | (A)10 | p1 | 136180 | 136189 | 10 | Design Primer |
78 | NC_014676 | (ACTTT)12 | p5 | 139802 | 139861 | 60 | Design Primer |
79 | NC_014676 | (TAATA)3 | p5 | 144961 | 144975 | 15 | Design Primer |
80 | NC_014676 | (A)11 | p1 | 145532 | 145542 | 11 | Design Primer |
81 | NC_014676 | (A)10 | p1 | 160562 | 160571 | 10 | Design Primer |