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ChloroMitoSSRDB 2.00 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

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All Repeats of Chaetomium thermophilum var. thermophilum DSM 1495 mitochondrion

Click on Table Heading To Sort Results Accordingly
S.No.Genome IDSSRSSR TypeStartEndTract LengthPrimer Design
1NC_015893(G)10p1475610Design Primer
2NC_015893(TAATGC)3p663264918Design Primer
3NC_015893(A)10p11157116610Design Primer
4NC_015893(TGG)4p31338134912Design Primer
5NC_015893(TA)17p21566159934Design Primer
6NC_015893(G)10p12200220910Design Primer
7NC_015893(AGCT)3ctattatgtcctccgctgcgtttcaacattatatg(TA)8ctattgaatagtaagttatatgctcggcggttgt(TA)13c34873609123Design Primer
8NC_015893(TTA)4p34467447812Design Primer
9NC_015893(TAC)4p35708571912Design Primer
10NC_015893(AT)10tactagtgcgctg(GTACT)3c5841588848Design Primer
11NC_015893(G)12agggtccagtctttgttatgttgcactccgaggtacttttgccatggcacttacactctccctggacccttctggatcctagtaagttctacttagac(ACGT)8tgaccacac(TATTG)3c60046169166Design Primer
12NC_015893(T)11p17784779411Design Primer
13NC_015893(ATTTA)3p59645965915Design Primer
14NC_015893(TTA)4p3106641067512Design Primer
15NC_015893(ATTGT)5att(GATAC)3(TACG)3*c*109371098852Design Primer
16NC_015893(AAT)5p3111171113115Design Primer
17NC_015893(CTTTT)3p5139521396615Design Primer
18NC_015893(AATA)3p4143441435512Design Primer
19NC_015893(CAG)13p3146511468939Design Primer
20NC_015893(ATGT)3p4150321504312Design Primer
21NC_015893(ACGT)3ggaggtctcatagtagttctgtcgttggttgggacgaa(G)11actagccatacgcaagggataaagagataagtctaagcatcaaaaacaaaaacaaggtagaggaggccatccgaccaag(GCA)4c1531315464152Design Primer
22NC_015893(AT)6ttatatatgtataaataatg(GTA)4c156231566644Design Primer
23NC_015893(G)10cgaaaattgcgggttggtgtaatagttaacatttttagttcatgcctaaaagaaaaaggtgcaaatcctttacccgcatatttaaatataa(AT)8c1589716013117Design Primer
24NC_015893(TG)7tcacagccgctgcagtatagacgtagtgactct(TA)10c174951756167Design Primer
25NC_015893(GTAC)3p4183971840812Design Primer
26NC_015893(A)10p1214332144210Design Primer
27NC_015893(T)11p1224472245711Design Primer
28NC_015893(TTA)4p3236032361412Design Primer
29NC_015893(G)10p1242052421410Design Primer
30NC_015893(G)10p1243762438510Design Primer
31NC_015893(CGTA)3cggtacatatttagttatattaatgagattatttattaatattctagtattttattgttatt(TTA)12c2477224881110Design Primer
32NC_015893(TG)15p2250292505830Design Primer
33NC_015893(TACG)3p4253582536912Design Primer
34NC_015893(C)12p1262572626812Design Primer
35NC_015893(G)10p1266432665210Design Primer
36NC_015893(AT)8acatatg(TA)12c268642691047Design Primer
37NC_015893(T)15p1283802839415Design Primer
38NC_015893(TGT)4p3308853089612Design Primer
39NC_015893(TA)6p2330093302012Design Primer
40NC_015893(TAT)5p3333323334615Design Primer
41NC_015893(TAA)4acactaaaattattgaaacacataaatcatttgtctattaagtttaaactaaaaatattgttcgttatttcggcatctgttccattct(GTTTA)4aatatcgcgcatgacgtacgtatgtatgcgtgggtggttgtatactatt(GTA)8c3543335625193Design Primer
42NC_015893(G)10p1372693727810Design Primer
43NC_015893(A)11p1376123762211Design Primer
44NC_015893(TAG)21p3382553831763Design Primer
45NC_015893(T)10p1387453875410Design Primer
46NC_015893(TACG)3p4422504226112Design Primer
47NC_015893(TA)10tttatatttatatttt(TATTTA)3c424814253454Design Primer
48NC_015893(AAT)7p3427164273621Design Primer
49NC_015893(AT)7p2432884330114Design Primer
50NC_015893(T)10p1442554426410Design Primer
51NC_015893(A)10ttctatgaataagaatgattagaattatcttgcttaaaaggaaagtttccggccccttt(G)10c446044468279Design Primer
52NC_015893(TAG)10p3456404566930Design Primer
53NC_015893(TAG)12p3469434697836Design Primer
54NC_015893(GGCT)3agctagcataat(A)10c470814711434Design Primer
55NC_015893(AAT)6p3483974841418Design Primer
56NC_015893(G)11p1493694937911Design Primer
57NC_015893(AGT)5p3496124962615Design Primer
58NC_015893(A)10p1500055001410Design Primer
59NC_015893(T)11agtagtattgtatttttttttattaggagatggacacttggaaag(A)10c505685063366Design Primer
60NC_015893(ATA)4p3510805109112Design Primer
61NC_015893(TA)8p2512525126716Design Primer
62NC_015893(G)10p1519855199410Design Primer
63NC_015893(TAG)16p3525195256648Design Primer
64NC_015893(TTTA)3p4533785338912Design Primer
65NC_015893(CAG)6p3536505366718Design Primer
66NC_015893(AATAC)3(ATTAC)3attatattataaaagaaaaaaaat(TTGTA)3ttt(TATTG)3c544505453687Design Primer
67NC_015893(ACTACG)3p6547685478518Design Primer
68NC_015893(ACAAAC)6p6552175525236Design Primer
69NC_015893(AT)10p2569115693020Design Primer
70NC_015893(TAAA)3p4571575716812Design Primer
71NC_015893(ACGT)4p4572895730416Design Primer
72NC_015893(TTAT)3tttatttataggtagtaaagtggttaaagctgctgt(A)12c582535831260Design Primer
73NC_015893(T)10p1592955930410Design Primer
74NC_015893(AT)10p2607046072320Design Primer
75NC_015893(TAG)6p3634386345518Design Primer
76NC_015893(TA)10p2638436386220Design Primer
77NC_015893(G)13p1656196563113Design Primer
78NC_015893(ATTA)3gggatttgttttgttatgaactctaatttttataaaataaaaactaaataagta(AT)12c676126770190Design Primer
79NC_015893(G)11p1678646787411Design Primer
80NC_015893(A)11p1681836819311Design Primer
81NC_015893(T)10attaatacatcatagtcatagcaaatc(A)11ttacataaaaaaaattaa(AT)6c684806855778Design Primer
82NC_015893(AT)7p2687296874214Design Primer
83NC_015893(G)11p1713867139611Design Primer
84NC_015893(TGA)5p3715977161115Design Primer
85NC_015893(GTTTA)4p5782317825020Design Primer
86NC_015893(TTTCC)3atttcatttcatttagaaa(G)10c789317897444Design Primer
87NC_015893(TAT)5p3824028241615Design Primer
88NC_015893(TAT)4p3835138352412Design Primer
89NC_015893(AATA)3p4856488565912Design Primer
90NC_015893(AT)7p2860818609414Design Primer
91NC_015893(A)11p1908559086511Design Primer
92NC_015893(T)10p1916909169910Design Primer
93NC_015893(A)12p1918139182412Design Primer
94NC_015893(ATTTA)3p5973239733715Design Primer
95NC_015893(TAT)4p3977329774312Design Primer
96NC_015893(ATT)4p310047710048812Design Primer
97NC_015893(TACG)6p410138610140924Design Primer
98NC_015893(CTGG)9p410155410158936Design Primer
99NC_015893(AGG)5gaaatactagtaactactgaaatttcagtagaaattagtgatgatgtcaaatggaaatatatgatgaggaatattaatgtaaatagtggatcagaa(AAT)5attaatgga(AAT)5c103710103859150Design Primer
100NC_015893(T)10gactttt(CATTG)3ctagcagccaagttggctactaaatagggggggtagtacctgcgggactaccacccaatatttaatccctctatgtcaccacgc(ACGT)13cgatagaggaaagaaatgggagaagaattaagaggtagttcctcttagttaaagccccatgatat(TGCA)4tgggtatataaacccaactactgttacaggaaagaagaatatttgaaaatttaatgatagtaggataaataaaaaaaaagtttt(TATTC)3c103975104322348Design Primer
101NC_015893(AT)11p210443810445922Design Primer
102NC_015893(A)10p110459710460610Design Primer
103NC_015893(TATT)3p410527310528412Design Primer
104NC_015893(GAA)5p310565810567215Design Primer
105NC_015893(A)10p110692110693010Design Primer
106NC_015893(TGA)6tggtgttattataagaattttactaatt(GTAC)5c10809410815966Design Primer
107NC_015893(GTA)11p310837710840933Design Primer
108NC_015893(TAATG)3p510974210975615Design Primer
109NC_015893(A)10p111141611142510Design Primer
110NC_015893(TTA)7gtactaataaaacaaaacagtgctggagcaat(A)10c11192511198763Design Primer
111NC_015893(GTAC)4p411233211234716Design Primer
112NC_015893(CGTA)5cggtacgtacgtaaagtatacacagggatataggatgtactcagggtggaggtagaggttggatttaacataca(TACG)3tacatgttttgtactactac(TAG)13tattgtata(GTATT)4c112501112694194Design Primer
113NC_015893(CAAA)3p411451111452212Design Primer
114NC_015893(A)12p111534411535512Design Primer
115NC_015893(GCT)29p311547911556587Design Primer
116NC_015893(GTA)6p311567511569218Design Primer
117NC_015893(A)10ttaaattta(GTAGT)4c11588511592339Design Primer
118NC_015893(ATTT)3p411611411612512Design Primer
119NC_015893(TA)7p212033112034414Design Primer
120NC_015893(A)10p112181712182610Design Primer
121NC_015893(TTC)4p312248812249912Design Primer
122NC_015893(TACT)6tttgtttgttaaagtt(AGG)4c12670012675152Design Primer
123NC_015893(ATAA)3(ATAAAT)4*c*12699912703032Design Primer