All Repeats of Paracoccidioides brasiliensis mitochondrion
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S.No. | Genome ID | SSR | SSR Type | Start | End | Tract Length | Primer Design |
---|---|---|---|---|---|---|---|
1 | NC_007935 | (TTA)4 | p3 | 224 | 235 | 12 | Design Primer |
2 | NC_007935 | (AT)9agatatatctctgtatcttttatttttgataattatttttataaataatatt(TA)6attttttattaaaaatatagtaagagttaaatatctagtaaatatatagatcgatctaaagatctctaataatacaatat(TAA)5gaataataaggagaataattcttaaaaaaaagaataaagaattaaaataataagaataggg(GGA)5gggggaggg(GGA)5 | c | 410 | 686 | 277 | Design Primer |
3 | NC_007935 | (T)10attctttgtacttatcctttaatttatattaaat(TC)6 | c | 947 | 1002 | 56 | Design Primer |
4 | NC_007935 | (TA)9 | p2 | 1273 | 1290 | 18 | Design Primer |
5 | NC_007935 | (ATT)5ataataagaagaagaataataagaagaataataataagaatgagaataaataattacttgtttataaaaaagtaagctattattaatttaaatta(TGAT)4 | c | 1466 | 1591 | 126 | Design Primer |
6 | NC_007935 | (AATT)5 | p4 | 1716 | 1735 | 20 | Design Primer |
7 | NC_007935 | (TATAT)3(TA)11*tctatataagataaataataataagggtaataataattaatgaataataaaataatattt(ATA)4agggtaataataattaaagagtaatagctaagtaatatagtaataa(G)13agggt(AATA)4 | c* | 2104 | 2287 | 184 | Design Primer |
8 | NC_007935 | (TATC)5(TA)8 | c | 2433 | 2468 | 36 | Design Primer |
9 | NC_007935 | (TTTA)6 | p4 | 2638 | 2661 | 24 | Design Primer |
10 | NC_007935 | (ATA)4 | p3 | 2991 | 3002 | 12 | Design Primer |
11 | NC_007935 | (ATA)4ctaaa(TAT)5tcttctaattattctcattataatcctaagtttattaattcaattcaatttaattcaattcaattt(AATTC)9cctactaacaagtatagtatactatactaaataattattatgtattaaatctttaaatatttagctctttagtactatatttctttatatttatataaag(TTA)8ttcttcttagaagaataattcttcttattaataatataaaaatatattaat(TA)10 | c | 3409 | 3746 | 338 | Design Primer |
12 | NC_007935 | (AATA)4 | p4 | 3888 | 3903 | 16 | Design Primer |
13 | NC_007935 | (TA)13 | p2 | 4137 | 4162 | 26 | Design Primer |
14 | NC_007935 | (ATTTA)3 | p5 | 4282 | 4296 | 15 | Design Primer |
15 | NC_007935 | (ATA)4attttattataaacaataatattaaaaagaaaagtgttatttatattataataatattatatttatatataa(AT)9taaaaaatagagtctaaccttaatctttaacaaattatttccattattatctaaatattattatcataattaatattgcatattat(ATA)4 | c | 4453 | 4652 | 200 | Design Primer |
16 | NC_007935 | (A)10 | p1 | 4786 | 4795 | 10 | Design Primer |
17 | NC_007935 | (TTAT)4ttaattttataaatctagacatcaatcgatc(TA)10 | c | 6307 | 6373 | 67 | Design Primer |
18 | NC_007935 | (TTATT)3 | p5 | 6488 | 6502 | 15 | Design Primer |
19 | NC_007935 | (TTA)4 | p3 | 6908 | 6919 | 12 | Design Primer |
20 | NC_007935 | (AT)11aaatatattattat(AATA)8 | c | 8163 | 8230 | 68 | Design Primer |
21 | NC_007935 | (A)10 | p1 | 8978 | 8987 | 10 | Design Primer |
22 | NC_007935 | (TAT)7 | p3 | 9226 | 9246 | 21 | Design Primer |
23 | NC_007935 | (ATA)5tttttaagaagagaaagtttattcttcaaagttctaagtatctaggttattattaatattattattcttattata(ATT)4 | c | 9422 | 9523 | 102 | Design Primer |
24 | NC_007935 | (AAATAT)5 | p6 | 10665 | 10694 | 30 | Design Primer |
25 | NC_007935 | (AT)6ttatt(TA)9 | c | 12391 | 12425 | 35 | Design Primer |
26 | NC_007935 | (ATAA)5 | p4 | 13236 | 13255 | 20 | Design Primer |
27 | NC_007935 | (TTCC)3ctttccttccctccccctttcctttcctccccttccttcccttccctccccct(TTCC)3 | c | 13800 | 13876 | 77 | Design Primer |
28 | NC_007935 | (TTCTTA)3(TTA)4*tatttataattcttcttcttattgtaattattattc(TTA)7taattagtac(TAG)8taatagtagtaataatttagtctaaatttactaattaaattcttttaattaattttagtaaatc(TTA)4gtagaatcttaagtttttaattatagggaggattaggt(ATA)5 | c* | 14091 | 14337 | 247 | Design Primer |
29 | NC_007935 | (TA)17 | p2 | 14796 | 14829 | 34 | Design Primer |
30 | NC_007935 | (ATCG)5 | p4 | 15004 | 15023 | 20 | Design Primer |
31 | NC_007935 | (AT)6 | p2 | 15150 | 15161 | 12 | Design Primer |
32 | NC_007935 | (TATTAG)4tattgttataattattatttttattcttcttattatttttattttaataaaattatttt(TTA)4ttc(TTA)6ttcttcttcttattattcttattataaataag(ATT)4 | c | 15801 | 15960 | 160 | Design Primer |
33 | NC_007935 | (TTA)4ttcttataaatattatttcttattaatattacttttaatagtcttaagttataatataattataattttaatttaatagtatctactactatattcttta(AT)9 | c | 17099 | 17228 | 130 | Design Primer |
34 | NC_007935 | (TAATTA)3 | p6 | 17368 | 17385 | 18 | Design Primer |
35 | NC_007935 | (CCT)5ccccttcctcctccttctttccct(TCC)7(CCT)5ccccctccc(CCT)5ccccttcccc(CCT)5 | c | 17562 | 17685 | 124 | Design Primer |
36 | NC_007935 | (AT)7 | p2 | 17952 | 17965 | 14 | Design Primer |
37 | NC_007935 | (TA)7 | p2 | 18455 | 18468 | 14 | Design Primer |
38 | NC_007935 | (ATA)4 | p3 | 19429 | 19440 | 12 | Design Primer |
39 | NC_007935 | (TTAT)3 | p4 | 20586 | 20597 | 12 | Design Primer |
40 | NC_007935 | (TCC)7ct(CTC)7cccttccc(CCT)5 | c | 20843 | 20909 | 67 | Design Primer |
41 | NC_007935 | (T)11 | p1 | 21059 | 21069 | 11 | Design Primer |
42 | NC_007935 | (TTAC)3ttat(TTAC)3 | c | 21374 | 21401 | 28 | Design Primer |
43 | NC_007935 | (TCCT)3 | p4 | 21671 | 21682 | 12 | Design Primer |
44 | NC_007935 | (TAT)5 | p3 | 21818 | 21832 | 15 | Design Primer |
45 | NC_007935 | (TA)8 | p2 | 21940 | 21955 | 16 | Design Primer |
46 | NC_007935 | (TCCT)3tct(TTCC)4c(TCCT)4tct(TTCC)6ttct(TTCC)5c(TCCT)5tct(TTCC)4ttcttcacctattagtttatatttatttactttcctcctttcttattattagtattattactttatttagtttagtctttatatttattaatataatatc(TTA)10tatagtactttaccttttatttttatttaatagaggtgaaaaatctctttataaatctaaatctttagagtattgtattatttattgtttatttat(ATAGA)3 | c | 22285 | 22664 | 380 | Design Primer |
47 | NC_007935 | (CTC)4cccttcctt(CTC)4cttctccc(CCT)8ccc(CCT)7cccccctccc(CCT)5 | c | 23787 | 23900 | 114 | Design Primer |
48 | NC_007935 | (AT)6(TTAT)3atc(TTTA)4tatctatatcgatcgatctatcgatcta(TATT)4ag(AT)8cta(TATATT)5ttgaaggaaaatccttaacttattagataaatttatataatatattttttattcttt(TTC)4(TTA)4 | c | 24071 | 24289 | 219 | Design Primer |
49 | NC_007935 | (ATA)8 | p3 | 24429 | 24452 | 24 | Design Primer |
50 | NC_007935 | (TAAT)3 | p4 | 24590 | 24601 | 12 | Design Primer |
51 | NC_007935 | (TA)7 | p2 | 25729 | 25742 | 14 | Design Primer |
52 | NC_007935 | (GAA)6gcaatatataaaatataatttatttatattgaaattattgtatagaataaaaggaagaggataagttaaaaagctgctattatttcta(AT)8 | c | 26000 | 26121 | 122 | Design Primer |
53 | NC_007935 | (AATT)4tattcatttttgtattttgaaataaaattcaagaaa(AT)9 | c | 27126 | 27195 | 70 | Design Primer |
54 | NC_007935 | (TATT)3 | p4 | 27409 | 27420 | 12 | Design Primer |
55 | NC_007935 | (ATAAA)3tatataaa(TAT)5tttta(T)12cagatattaatctttaagattatatcttatatatttatatatgagttatt(ATATTA)3(T)11 | c | 27943 | 28076 | 134 | Design Primer |
56 | NC_007935 | (AAT)4 | p3 | 28259 | 28270 | 12 | Design Primer |
57 | NC_007935 | (CTCCC)4 | p5 | 29775 | 29794 | 20 | Design Primer |
58 | NC_007935 | (TTA)4 | p3 | 29987 | 29998 | 12 | Design Primer |
59 | NC_007935 | (TA)6 | p2 | 30139 | 30150 | 12 | Design Primer |
60 | NC_007935 | (AT)6 | p2 | 30362 | 30373 | 12 | Design Primer |
61 | NC_007935 | (AT)9 | p2 | 30528 | 30545 | 18 | Design Primer |
62 | NC_007935 | (TTAT)3taattaataagaagtattagtttaattttag(ATTA)7 | c | 30668 | 30738 | 71 | Design Primer |
63 | NC_007935 | (ATTAT)3 | p5 | 31000 | 31014 | 15 | Design Primer |
64 | NC_007935 | (ATT)4aatt(TTA)4atattata(ATT)6 | c | 31474 | 31527 | 54 | Design Primer |
65 | NC_007935 | (ATAAT)4 | p5 | 31778 | 31797 | 20 | Design Primer |
66 | NC_007935 | (AAT)5 | p3 | 32168 | 32182 | 15 | Design Primer |
67 | NC_007935 | (AT)11 | p2 | 32407 | 32428 | 22 | Design Primer |
68 | NC_007935 | (ATAA)3aaatataataattattattctta(TTC)4 | c | 32623 | 32669 | 47 | Design Primer |
69 | NC_007935 | (TAAA)3(AAATA)4* | c* | 33091 | 33115 | 25 | Design Primer |
70 | NC_007935 | (A)11 | p1 | 33328 | 33338 | 11 | Design Primer |
71 | NC_007935 | (AAATA)5 | p5 | 34265 | 34289 | 25 | Design Primer |
72 | NC_007935 | (A)10 | p1 | 35072 | 35081 | 10 | Design Primer |
73 | NC_007935 | (TTAAA)5 | p5 | 36466 | 36490 | 25 | Design Primer |
74 | NC_007935 | (AT)6 | p2 | 37080 | 37091 | 12 | Design Primer |
75 | NC_007935 | (TATAT)3tataatatttttat(A)11 | c | 37772 | 37811 | 40 | Design Primer |
76 | NC_007935 | (ATA)6 | p3 | 38357 | 38374 | 18 | Design Primer |
77 | NC_007935 | (TA)9tttatctttttagattctagattaatatttatagatttatatc(TA)6tttaaatatagatatatatagatt(TA)6 | c | 39394 | 39502 | 109 | Design Primer |
78 | NC_007935 | (ACTC)5 | p4 | 40070 | 40089 | 20 | Design Primer |
79 | NC_007935 | (AAT)8 | p3 | 40202 | 40225 | 24 | Design Primer |
80 | NC_007935 | (AAT)4(ATAATT)3*ataataataagtctaattc(TAA)4 | c* | 40578 | 40633 | 56 | Design Primer |
81 | NC_007935 | (TATT)3 | p4 | 40922 | 40933 | 12 | Design Primer |
82 | NC_007935 | (TAA)4 | p3 | 42234 | 42245 | 12 | Design Primer |
83 | NC_007935 | (TAA)6ttgtattaataataagaataacttattaatttatgtttaaataaacagtaga(ATTT)3cttataaaacatcctttattcaattcttaaggtattaaagttattcaattcttaaggtattaaagaattatat(ATAA)3 | c | 43469 | 43635 | 167 | Design Primer |
84 | NC_007935 | (TA)6 | p2 | 43963 | 43974 | 12 | Design Primer |
85 | NC_007935 | (AAT)10aagaag(AAT)5 | c | 44107 | 44157 | 51 | Design Primer |
86 | NC_007935 | (AAT)4 | p3 | 44355 | 44366 | 12 | Design Primer |
87 | NC_007935 | (AAAT)6aagagaagagaaattaattctctaatt(TTTA)3 | c | 44845 | 44907 | 63 | Design Primer |
88 | NC_007935 | (AT)9 | p2 | 45165 | 45182 | 18 | Design Primer |
89 | NC_007935 | (ATG)10 | p3 | 45673 | 45702 | 30 | Design Primer |
90 | NC_007935 | (ATATA)11 | p5 | 46727 | 46781 | 55 | Design Primer |
91 | NC_007935 | (TAT)5 | p3 | 46981 | 46995 | 15 | Design Primer |
92 | NC_007935 | (ATT)4 | p3 | 47727 | 47738 | 12 | Design Primer |
93 | NC_007935 | (AATT)4tattaattaatatgtttaaagatatggtcctaatattatttatatttattaaaaa(AAAT)4aatattgcatccagaagtcaaagtaaaatatataggcttcttaacattgctatatgctggaatcactttgataattagtcttaattacaacattata(AAT)4aag(AAT)5 | c | 48062 | 48275 | 214 | Design Primer |
94 | NC_007935 | (TAT)8 | p3 | 49213 | 49236 | 24 | Design Primer |
95 | NC_007935 | (A)10 | p1 | 49599 | 49608 | 10 | Design Primer |
96 | NC_007935 | (AATAA)6(AAAT)4* | c* | 49719 | 49758 | 40 | Design Primer |
97 | NC_007935 | (ATA)7ag(AAT)5 | c | 51190 | 51227 | 38 | Design Primer |
98 | NC_007935 | (T)14atttattcc(TTAT)3 | c | 52233 | 52267 | 35 | Design Primer |
99 | NC_007935 | (ATA)10aatataataatattaatttattaataaagtttttagtcaaaaaaagataa(AAT)4 | c | 52992 | 53083 | 92 | Design Primer |
100 | NC_007935 | (TACT)13tcttattattcttacttatttatattctataaataaattatatttaaccccctatataaattataaactaatttattctta(AATT)5gtttatttc(TTTA)3(ATTA)3 | c | 54273 | 54458 | 186 | Design Primer |
101 | NC_007935 | (ATA)5 | p3 | 54572 | 54586 | 15 | Design Primer |
102 | NC_007935 | (TTAT)7agtaataaggagaaatctcttagaatataaagaagattattaag(AAT)4 | c | 54748 | 54831 | 84 | Design Primer |
103 | NC_007935 | (AAT)5 | p3 | 55360 | 55374 | 15 | Design Primer |
104 | NC_007935 | (TTAA)3 | p4 | 55905 | 55916 | 12 | Design Primer |
105 | NC_007935 | (ATTT)3taatccttaattatctcattaccttttcattttgagata(TAAT)5tttttaataaattattattaatatagatttaagtaaataagaagtaagtttaaatttaa(T)11 | c | 56073 | 56213 | 141 | Design Primer |
106 | NC_007935 | (AAG)5 | p3 | 56572 | 56586 | 15 | Design Primer |
107 | NC_007935 | (AAT)6aagaagaaaaataataaaaagaattctaataattataataag(AAT)6(ATAA)4 | c | 56741 | 56834 | 94 | Design Primer |
108 | NC_007935 | (TA)6tctatttatttatataaattatattatatataataagt(TA)9 | c | 57196 | 57263 | 68 | Design Primer |
109 | NC_007935 | (AAT)5tattatattcttctttttaaataattaatttatatcttttaataataaagactaatatctacaaatataaac(TA)14ttaactatttttataagatagagagattgatctatcaatggatcgatctaaatatattaaatataatgatt(ATAA)3ttaataagaagatgtaattctctttttaagactttaatattataatacttatt(ATA)6ctaataataatattaattgtattaagttaataagatgcttaaagtaataatatatagatctagatatagatag(AT)7aagcttctatttataataagagagat(ATATA)3atagagggaggataataatttaatctagtc(TTAA)3aaataaggataattagattattaattaatttaatagtaatataattatattagatatatagataattatctatt(TTTA)3ataagagagatttagatataaatataataataaagagtataaataagtaatataaggtaagagattaa(ATAG)7attctaaataatttcattaaagggataacagagctataattggggaaagg(AGGATT)5aatag(TAAGAT)3 | c | 57626 | 58349 | 724 | Design Primer |
110 | NC_007935 | (TCT)4taaaattaatttaattgaatttattcctaattataattataataatagtatattagataataatttattaaatatatat(TA)12gatatatttttatt(A)11(AAAT)5* | c* | 58891 | 59047 | 157 | Design Primer |
111 | NC_007935 | (ATA)4 | p3 | 59473 | 59484 | 12 | Design Primer |
112 | NC_007935 | (TCCT)6 | p4 | 60179 | 60202 | 24 | Design Primer |
113 | NC_007935 | (TAA)4ttattattatatattaattattatatatagaatatatttctatatatt(TA)12 | c | 60305 | 60388 | 84 | Design Primer |
114 | NC_007935 | (TAATA)4tt(ATAGA)3taactaaaaagattaaaggttatattataaatatattttagttatt(ATA)6t(TAA)7gaagaatatataagaagtataataagtaattaagtaatagatagttaagtagatagtgtattactagtaa(TAG)6 | c | 60544 | 60754 | 211 | Design Primer |
115 | NC_007935 | (AT)7 | p2 | 61343 | 61356 | 14 | Design Primer |
116 | NC_007935 | (TTAA)7 | p4 | 61675 | 61702 | 28 | Design Primer |
117 | NC_007935 | (TA)6ttat(ATATA)3 | c | 61874 | 61904 | 31 | Design Primer |
118 | NC_007935 | (TA)10 | p2 | 62190 | 62209 | 20 | Design Primer |
119 | NC_007935 | (ATA)9attattatataataagtatatatactatttaagataaattaatg(AAT)9 | c | 62506 | 62603 | 98 | Design Primer |
120 | NC_007935 | (TA)9 | p2 | 63009 | 63026 | 18 | Design Primer |
121 | NC_007935 | (TTAAA)3tttatattatattctacttagctt(A)10gaatatagatattaatattat(TAA)13 | c | 63716 | 63824 | 109 | Design Primer |
122 | NC_007935 | (ATATA)3tataaatacatatatataaagtatattaataggtatataatatataaata(G)11 | c | 63936 | 64011 | 76 | Design Primer |
123 | NC_007935 | (TTTA)5 | p4 | 64200 | 64219 | 20 | Design Primer |
124 | NC_007935 | (TATT)7 | p4 | 64343 | 64370 | 28 | Design Primer |
125 | NC_007935 | (ATA)7 | p3 | 64613 | 64633 | 21 | Design Primer |
126 | NC_007935 | (TATT)3tatatatataaatataa(AT)10 | c | 64917 | 64965 | 49 | Design Primer |
127 | NC_007935 | (AT)6tatagttattatatttataattttatttagaaatttagatatagttttatataaatatagatctatagaatctaatctattatattgaatatatataa(AT)8ta(AT)6tgttatataatttata(ATAAT)3atattattataagaataataatattaataagaagaataataataagaataagatttcattt(TAA)5 | c | 65371 | 65617 | 247 | Design Primer |
128 | NC_007935 | (TTTA)8 | p4 | 65863 | 65894 | 32 | Design Primer |
129 | NC_007935 | (TTA)4agaataataatt(ATA)5tttattagtaatattaatcaatt(AATC)4 | c | 66195 | 66272 | 78 | Design Primer |
130 | NC_007935 | (TAATA)4 | p5 | 66389 | 66408 | 20 | Design Primer |
131 | NC_007935 | (AATAG)4aatataagagaatag(AATAT)3attatatttctg(AT)8a(AT)9 | c | 66603 | 66699 | 97 | Design Primer |
132 | NC_007935 | (TA)8 | p2 | 67285 | 67300 | 16 | Design Primer |
133 | NC_007935 | (TA)8 | p2 | 67537 | 67552 | 16 | Design Primer |
134 | NC_007935 | (ATA)7tactcctcctatttaaattctaatcagaagacttatatttaatctgatta(AT)8ttaatatatttattcatatagctctttat(TAA)4gaataatatttatttttattcaatataatcataatactcatactaataaaataataatacttttaattatat(TAA)4tattaataag(AAGAAT)3 | c | 67881 | 68120 | 240 | Design Primer |
135 | NC_007935 | (TA)16 | p2 | 68245 | 68276 | 32 | Design Primer |
136 | NC_007935 | (ATTAT)3 | p5 | 68508 | 68522 | 15 | Design Primer |
137 | NC_007935 | (AT)7 | p2 | 68787 | 68800 | 14 | Design Primer |
138 | NC_007935 | (AT)6 | p2 | 68902 | 68913 | 12 | Design Primer |
139 | NC_007935 | (TAT)5taatatgaagaataagattatattttaagtaattttaatt(TA)9tctatatttattatataggtataatttatagttaacataatagagaagttatataggattataataaatatttatcttttatagggtatg(TA)10 | c | 69057 | 69239 | 183 | Design Primer |
140 | NC_007935 | (AT)8ttattgaataaaaaggagataaataatctaaagatagtataaataaattatttatctttatatttctaagggagaatatatata(AT)6ttttataaaaaatataata(TAT)4 | c | 69517 | 69659 | 143 | Design Primer |
141 | NC_007935 | (TAT)5taatattctttttataaattaatttatctaat(TATC)4tatataa(CTAT)3 | c | 69827 | 69908 | 82 | Design Primer |
142 | NC_007935 | (TA)12tgtatatatctctatatctatg(TGTATA)3tagataaatatatttatagctatatatttatataaataataag(AAT)4 | c | 70347 | 70465 | 119 | Design Primer |
143 | NC_007935 | (G)15tttattaagtatacaatataaataaagtataaaaaattaaaaaattaaaa(AATT)3aatactaaggatta(AAAT)3 | c | 70633 | 70735 | 103 | Design Primer |
144 | NC_007935 | (TATTC)3tattttattatat(TA)9tgtagag(AT)7 | c | 71207 | 71273 | 67 | Design Primer |