MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Chlamydia pecorum W73

Total Repeats: 54

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_022440	TAAAAA	2	12	26257	26268	83.33 %	16.67 %	0 %	0 %	Non-Coding
2	NC_022440	TTTTTA	2	12	38423	38434	16.67 %	83.33 %	0 %	0 %	Non-Coding
3	NC_022440	TCATAT	2	12	58362	58373	33.33 %	50 %	0 %	16.67 %	Non-Coding
4	NC_022440	TTTCTG	2	12	68682	68693	0 %	66.67 %	16.67 %	16.67 %	Non-Coding
5	NC_022440	TTTTGT	2	12	75894	75905	0 %	83.33 %	16.67 %	0 %	Non-Coding
6	NC_022440	TTAAAA	2	12	75944	75955	66.67 %	33.33 %	0 %	0 %	Non-Coding
7	NC_022440	TGTTTA	2	12	84611	84622	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
8	NC_022440	GGAATC	2	12	90761	90772	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
9	NC_022440	TTAATA	2	12	135728	135739	50 %	50 %	0 %	0 %	Non-Coding
10	NC_022440	TTCTTT	2	12	135748	135759	0 %	83.33 %	0 %	16.67 %	Non-Coding
11	NC_022440	ATTTCT	2	12	220205	220216	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
12	NC_022440	TGAGTT	2	12	226164	226175	16.67 %	50 %	33.33 %	0 %	Non-Coding
13	NC_022440	CTCCTA	2	12	227403	227414	16.67 %	33.33 %	0 %	50 %	Non-Coding
14	NC_022440	AGAGAA	2	12	258337	258348	66.67 %	0 %	33.33 %	0 %	Non-Coding
15	NC_022440	GGAATG	2	12	290841	290852	33.33 %	16.67 %	50 %	0 %	Non-Coding
16	NC_022440	GAATAA	2	12	308925	308936	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
17	NC_022440	ACAAAA	2	12	314568	314579	83.33 %	0 %	0 %	16.67 %	Non-Coding
18	NC_022440	TTTATG	2	12	372939	372950	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
19	NC_022440	TTTTTC	2	12	399302	399313	0 %	83.33 %	0 %	16.67 %	Non-Coding
20	NC_022440	TAGAGA	2	12	403734	403745	50 %	16.67 %	33.33 %	0 %	Non-Coding
21	NC_022440	AAAAAT	2	12	442517	442528	83.33 %	16.67 %	0 %	0 %	Non-Coding
22	NC_022440	TTTGTT	2	12	478729	478740	0 %	83.33 %	16.67 %	0 %	Non-Coding
23	NC_022440	GTTTTT	2	12	479394	479405	0 %	83.33 %	16.67 %	0 %	Non-Coding
24	NC_022440	AAATTA	2	12	519961	519972	66.67 %	33.33 %	0 %	0 %	Non-Coding
25	NC_022440	TTAATA	2	12	556355	556366	50 %	50 %	0 %	0 %	Non-Coding
26	NC_022440	ATTTTT	2	12	579188	579199	16.67 %	83.33 %	0 %	0 %	Non-Coding
27	NC_022440	TCTATG	2	12	589585	589596	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
28	NC_022440	TGAGGG	2	12	598891	598902	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
29	NC_022440	GGAAGT	2	12	598960	598971	33.33 %	16.67 %	50 %	0 %	Non-Coding
30	NC_022440	GGATTA	2	12	598972	598983	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
31	NC_022440	AGAAAA	2	12	599186	599197	83.33 %	0 %	16.67 %	0 %	Non-Coding
32	NC_022440	AAATGT	2	12	600787	600798	50 %	33.33 %	16.67 %	0 %	Non-Coding
33	NC_022440	TCCTCT	2	12	626593	626604	0 %	50 %	0 %	50 %	Non-Coding
34	NC_022440	GAAGGG	2	12	627565	627576	33.33 %	0 %	66.67 %	0 %	Non-Coding
35	NC_022440	CGAGTA	2	12	627726	627737	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
36	NC_022440	AGAATA	2	12	659233	659244	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
37	NC_022440	AATAAA	2	12	667615	667626	83.33 %	16.67 %	0 %	0 %	Non-Coding
38	NC_022440	AAAATT	2	12	679236	679247	66.67 %	33.33 %	0 %	0 %	Non-Coding
39	NC_022440	AAAAGA	2	12	681168	681179	83.33 %	0 %	16.67 %	0 %	Non-Coding
40	NC_022440	AACTCT	2	12	761353	761364	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
41	NC_022440	TAACTT	2	12	802201	802212	33.33 %	50 %	0 %	16.67 %	Non-Coding
42	NC_022440	TAAAAA	2	12	844702	844713	83.33 %	16.67 %	0 %	0 %	Non-Coding
43	NC_022440	GATTTA	2	12	888995	889006	33.33 %	50 %	16.67 %	0 %	Non-Coding
44	NC_022440	ATTTGG	2	12	891311	891322	16.67 %	50 %	33.33 %	0 %	Non-Coding
45	NC_022440	AAAAAT	2	12	909471	909482	83.33 %	16.67 %	0 %	0 %	Non-Coding
46	NC_022440	ATAAAA	2	12	925808	925819	83.33 %	16.67 %	0 %	0 %	Non-Coding
47	NC_022440	TTTTTC	2	12	927461	927472	0 %	83.33 %	0 %	16.67 %	Non-Coding
48	NC_022440	TCGCTT	2	12	961877	961888	0 %	50 %	16.67 %	33.33 %	Non-Coding
49	NC_022440	TCCTTA	2	12	962783	962794	16.67 %	50 %	0 %	33.33 %	Non-Coding
50	NC_022440	ACTATA	2	12	1004436	1004447	50 %	33.33 %	0 %	16.67 %	Non-Coding
51	NC_022440	ATTTTT	2	12	1042581	1042592	16.67 %	83.33 %	0 %	0 %	Non-Coding
52	NC_022440	TTCCTT	2	12	1067732	1067743	0 %	66.67 %	0 %	33.33 %	Non-Coding
53	NC_022440	CTTTCT	2	12	1102776	1102787	0 %	66.67 %	0 %	33.33 %	Non-Coding
54	NC_022440	AAATAA	2	12	1104731	1104742	83.33 %	16.67 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.