MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Chlamydia trachomatis strain J/31-98

Total Repeats: 40

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_022121	GAAGGA	2	12	760	771	50 %	0 %	50 %	0 %	Non-Coding
2	NC_022121	TATGGA	2	12	813	824	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
3	NC_022121	CAAAAA	2	12	6250	6261	83.33 %	0 %	0 %	16.67 %	Non-Coding
4	NC_022121	AAAAAT	2	12	60985	60996	83.33 %	16.67 %	0 %	0 %	Non-Coding
5	NC_022121	ATCTAG	2	12	76714	76725	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
6	NC_022121	TTTTAG	2	12	115986	115997	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
7	NC_022121	TAAAAA	2	12	120581	120592	83.33 %	16.67 %	0 %	0 %	Non-Coding
8	NC_022121	GGGTTT	2	12	123778	123789	0 %	50 %	50 %	0 %	Non-Coding
9	NC_022121	TTGCAT	2	12	124060	124071	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
10	NC_022121	AAGAGA	2	12	124429	124440	66.67 %	0 %	33.33 %	0 %	Non-Coding
11	NC_022121	AGAAAA	2	12	182611	182622	83.33 %	0 %	16.67 %	0 %	Non-Coding
12	NC_022121	TATGAA	2	12	195386	195397	50 %	33.33 %	16.67 %	0 %	Non-Coding
13	NC_022121	TTTTAC	2	12	221395	221406	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
14	NC_022121	AACCCT	2	12	255111	255122	33.33 %	16.67 %	0 %	50 %	Non-Coding
15	NC_022121	ATTTTT	2	12	255906	255917	16.67 %	83.33 %	0 %	0 %	Non-Coding
16	NC_022121	AGGAGA	2	12	271008	271019	50 %	0 %	50 %	0 %	Non-Coding
17	NC_022121	ATATTA	2	12	279906	279917	50 %	50 %	0 %	0 %	Non-Coding
18	NC_022121	AAAAAG	2	12	324059	324070	83.33 %	0 %	16.67 %	0 %	Non-Coding
19	NC_022121	AGAATA	2	12	361539	361550	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
20	NC_022121	TAACTA	2	12	503234	503245	50 %	33.33 %	0 %	16.67 %	Non-Coding
21	NC_022121	AAGAAA	2	12	503247	503258	83.33 %	0 %	16.67 %	0 %	Non-Coding
22	NC_022121	AGAATA	2	12	509222	509233	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
23	NC_022121	AACTAA	2	12	514955	514966	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
24	NC_022121	TCCCTC	2	12	548976	548987	0 %	33.33 %	0 %	66.67 %	Non-Coding
25	NC_022121	AAAAAT	2	12	566948	566959	83.33 %	16.67 %	0 %	0 %	Non-Coding
26	NC_022121	TAGGGG	2	12	606116	606127	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
27	NC_022121	TTATTT	2	12	649320	649331	16.67 %	83.33 %	0 %	0 %	Non-Coding
28	NC_022121	TATTTT	2	12	755265	755276	16.67 %	83.33 %	0 %	0 %	Non-Coding
29	NC_022121	GAGAAA	2	12	802732	802743	66.67 %	0 %	33.33 %	0 %	Non-Coding
30	NC_022121	TTTTCT	2	12	805190	805201	0 %	83.33 %	0 %	16.67 %	Non-Coding
31	NC_022121	ATTTTT	2	12	808969	808980	16.67 %	83.33 %	0 %	0 %	Non-Coding
32	NC_022121	TTTTTA	2	12	835407	835418	16.67 %	83.33 %	0 %	0 %	Non-Coding
33	NC_022121	TAAGGA	2	12	856370	856381	50 %	16.67 %	33.33 %	0 %	Non-Coding
34	NC_022121	CCGGAG	2	12	857288	857299	16.67 %	0 %	50 %	33.33 %	Non-Coding
35	NC_022121	TAAGGA	2	12	878416	878427	50 %	16.67 %	33.33 %	0 %	Non-Coding
36	NC_022121	CCGGAG	2	12	879334	879345	16.67 %	0 %	50 %	33.33 %	Non-Coding
37	NC_022121	GACGGC	2	12	921763	921774	16.67 %	0 %	50 %	33.33 %	Non-Coding
38	NC_022121	AAACAA	2	12	923451	923462	83.33 %	0 %	0 %	16.67 %	Non-Coding
39	NC_022121	ATTTTT	2	12	1038936	1038947	16.67 %	83.33 %	0 %	0 %	Non-Coding
40	NC_022121	TAAAAT	2	12	1042561	1042572	66.67 %	33.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.