MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Chlamydia trachomatis strain Ia20-97 genome

Total Repeats: 37

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_022120	GAAGGA	2	12	759	770	50 %	0 %	50 %	0 %	Non-Coding
2	NC_022120	TATGGA	2	12	812	823	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
3	NC_022120	CAAAAA	2	12	6248	6259	83.33 %	0 %	0 %	16.67 %	Non-Coding
4	NC_022120	AAAAAT	2	12	60957	60968	83.33 %	16.67 %	0 %	0 %	Non-Coding
5	NC_022120	ATCTAG	2	12	76685	76696	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
6	NC_022120	TTTTAG	2	12	115956	115967	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
7	NC_022120	TAAAAA	2	12	120551	120562	83.33 %	16.67 %	0 %	0 %	Non-Coding
8	NC_022120	GGGTTT	2	12	123748	123759	0 %	50 %	50 %	0 %	Non-Coding
9	NC_022120	TTGCAT	2	12	124030	124041	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
10	NC_022120	AAGAGA	2	12	124399	124410	66.67 %	0 %	33.33 %	0 %	Non-Coding
11	NC_022120	AGAAAA	2	12	182580	182591	83.33 %	0 %	16.67 %	0 %	Non-Coding
12	NC_022120	TTTTAC	2	12	221360	221371	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
13	NC_022120	AACCCT	2	12	255075	255086	33.33 %	16.67 %	0 %	50 %	Non-Coding
14	NC_022120	ATATTA	2	12	279869	279880	50 %	50 %	0 %	0 %	Non-Coding
15	NC_022120	AGAATA	2	12	361497	361508	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
16	NC_022120	TTCTTA	2	12	361517	361528	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
17	NC_022120	TAACTA	2	12	503184	503195	50 %	33.33 %	0 %	16.67 %	Non-Coding
18	NC_022120	AAGAAA	2	12	503197	503208	83.33 %	0 %	16.67 %	0 %	Non-Coding
19	NC_022120	AGAATA	2	12	509172	509183	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
20	NC_022120	AACTAA	2	12	514905	514916	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
21	NC_022120	CTCTAT	2	12	516988	516999	16.67 %	50 %	0 %	33.33 %	Non-Coding
22	NC_022120	CTTTAG	2	12	525245	525256	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
23	NC_022120	AAAAAT	2	12	566898	566909	83.33 %	16.67 %	0 %	0 %	Non-Coding
24	NC_022120	TAGGGG	2	12	606064	606075	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
25	NC_022120	TCTTTT	2	12	618058	618069	0 %	83.33 %	0 %	16.67 %	Non-Coding
26	NC_022120	TTATTT	2	12	649266	649277	16.67 %	83.33 %	0 %	0 %	Non-Coding
27	NC_022120	GAGAAA	2	12	802664	802675	66.67 %	0 %	33.33 %	0 %	Non-Coding
28	NC_022120	TTTTCT	2	12	805122	805133	0 %	83.33 %	0 %	16.67 %	Non-Coding
29	NC_022120	ATTTTT	2	12	808901	808912	16.67 %	83.33 %	0 %	0 %	Non-Coding
30	NC_022120	TTTTTA	2	12	835339	835350	16.67 %	83.33 %	0 %	0 %	Non-Coding
31	NC_022120	TAAGGA	2	12	856301	856312	50 %	16.67 %	33.33 %	0 %	Non-Coding
32	NC_022120	CCGGAG	2	12	857219	857230	16.67 %	0 %	50 %	33.33 %	Non-Coding
33	NC_022120	TAAGGA	2	12	878347	878358	50 %	16.67 %	33.33 %	0 %	Non-Coding
34	NC_022120	CCGGAG	2	12	879265	879276	16.67 %	0 %	50 %	33.33 %	Non-Coding
35	NC_022120	TCAGTA	2	12	995719	995730	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
36	NC_022120	ATTTTT	2	12	1038851	1038862	16.67 %	83.33 %	0 %	0 %	Non-Coding
37	NC_022120	TAAAAT	2	12	1042476	1042487	66.67 %	33.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.